data_2W2 # _chem_comp.id 2W2 _chem_comp.name "N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H20 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Nopaline _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-02-28 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 304.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2W2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4POX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2W2 OXT OXT O 0 1 N N N 16.478 -8.039 -1.830 1.790 -3.057 2.131 OXT 2W2 1 2W2 CAQ CAQ C 0 1 N N N 18.852 -8.192 2.160 0.405 3.428 0.693 CAQ 2W2 2 2W2 CAK CAK C 0 1 N N N 20.223 -7.725 1.757 0.821 1.980 0.758 CAK 2W2 3 2W2 CAM CAM C 0 1 N N N 20.697 -7.850 0.340 1.906 1.714 -0.287 CAM 2W2 4 2W2 CAU CAU C 0 1 N N R 20.208 -6.842 -0.680 2.378 0.263 -0.175 CAU 2W2 5 2W2 OAC OAC O 0 1 N N N 17.857 -8.102 1.389 0.924 4.170 -0.106 OAC 2W2 6 2W2 OAF OAF O 0 1 N N N 18.687 -8.666 3.317 -0.541 3.892 1.524 OAF 2W2 7 2W2 CAS CAS C 0 1 N N N 20.438 -5.436 -0.229 3.547 0.042 -1.099 CAS 2W2 8 2W2 OAH OAH O 0 1 N N N 19.497 -4.784 0.299 4.795 0.301 -0.676 OAH 2W2 9 2W2 OAE OAE O 0 1 N N N 21.578 -4.893 -0.375 3.362 -0.368 -2.220 OAE 2W2 10 2W2 N N N 0 1 N N N 18.822 -7.139 -1.051 1.281 -0.639 -0.550 N 2W2 11 2W2 CA CA C 0 1 N N S 18.056 -6.241 -1.957 0.789 -1.383 0.618 CA 2W2 12 2W2 C C C 0 1 N N N 16.686 -6.865 -2.222 1.704 -2.548 0.892 C 2W2 13 2W2 O O O 0 1 N N N 15.798 -6.211 -2.826 2.361 -3.025 -0.003 O 2W2 14 2W2 CB CB C 0 1 N N N 18.728 -5.847 -3.266 -0.623 -1.899 0.336 CB 2W2 15 2W2 CG CG C 0 1 N N N 19.430 -6.943 -4.008 -1.578 -0.713 0.180 CG 2W2 16 2W2 CD CD C 0 1 N N N 19.387 -6.973 -5.496 -2.991 -1.229 -0.102 CD 2W2 17 2W2 NE NE N 0 1 N N N 20.139 -8.086 -6.043 -3.905 -0.094 -0.251 NE 2W2 18 2W2 CZ CZ C 0 1 N N N 20.948 -7.968 -7.240 -5.237 -0.313 -0.510 CZ 2W2 19 2W2 NH2 NH2 N 0 1 N N N 21.601 -9.023 -7.646 -6.094 0.752 -0.650 NH2 2W2 20 2W2 NH1 NH1 N 0 1 N N N 21.033 -6.867 -7.916 -5.686 -1.531 -0.624 NH1 2W2 21 2W2 H1 H1 H 0 1 N N N 15.595 -8.300 -2.064 2.390 -3.804 2.259 H1 2W2 22 2W2 H2 H2 H 0 1 N N N 20.939 -8.285 2.377 1.211 1.758 1.751 H2 2W2 23 2W2 H3 H3 H 0 1 N N N 20.276 -6.656 2.011 -0.042 1.345 0.555 H3 2W2 24 2W2 H4 H4 H 0 1 N N N 20.394 -8.845 -0.017 1.501 1.889 -1.284 H4 2W2 25 2W2 H5 H5 H 0 1 N N N 21.795 -7.786 0.359 2.748 2.385 -0.115 H5 2W2 26 2W2 H6 H6 H 0 1 N N N 20.821 -6.989 -1.581 2.682 0.059 0.851 H6 2W2 27 2W2 H7 H7 H 0 1 N N N 17.774 -8.898 3.437 -0.774 4.827 1.446 H7 2W2 28 2W2 H8 H8 H 0 1 N N N 19.803 -3.914 0.528 5.513 0.144 -1.305 H8 2W2 29 2W2 H9 H9 H 0 1 N N N 18.304 -7.188 -0.197 1.565 -1.267 -1.286 H9 2W2 30 2W2 H11 H11 H 0 1 N N N 17.873 -5.307 -1.405 0.769 -0.725 1.486 H11 2W2 31 2W2 H12 H12 H 0 1 N N N 19.470 -5.067 -3.040 -0.619 -2.485 -0.583 H12 2W2 32 2W2 H13 H13 H 0 1 N N N 17.953 -5.436 -3.930 -0.954 -2.525 1.164 H13 2W2 33 2W2 H14 H14 H 0 1 N N N 18.999 -7.892 -3.657 -1.582 -0.127 1.099 H14 2W2 34 2W2 H15 H15 H 0 1 N N N 20.491 -6.894 -3.721 -1.248 -0.087 -0.649 H15 2W2 35 2W2 H16 H16 H 0 1 N N N 19.812 -6.035 -5.882 -2.987 -1.815 -1.021 H16 2W2 36 2W2 H17 H17 H 0 1 N N N 18.339 -7.061 -5.819 -3.321 -1.855 0.727 H17 2W2 37 2W2 H18 H18 H 0 1 N N N 20.098 -8.969 -5.576 -3.570 0.812 -0.166 H18 2W2 38 2W2 H19 H19 H 0 1 N N N 21.534 -9.880 -7.135 -5.760 1.658 -0.565 H19 2W2 39 2W2 H20 H20 H 0 1 N N N 22.168 -8.974 -8.468 -7.034 0.597 -0.833 H20 2W2 40 2W2 H21 H21 H 0 1 N N N 20.483 -6.136 -7.512 -5.081 -2.283 -0.526 H21 2W2 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2W2 NH1 CZ DOUB N N 1 2W2 NH2 CZ SING N N 2 2W2 CZ NE SING N N 3 2W2 NE CD SING N N 4 2W2 CD CG SING N N 5 2W2 CG CB SING N N 6 2W2 CB CA SING N N 7 2W2 O C DOUB N N 8 2W2 C CA SING N N 9 2W2 C OXT SING N N 10 2W2 CA N SING N N 11 2W2 N CAU SING N N 12 2W2 CAU CAS SING N N 13 2W2 CAU CAM SING N N 14 2W2 OAE CAS DOUB N N 15 2W2 CAS OAH SING N N 16 2W2 CAM CAK SING N N 17 2W2 OAC CAQ DOUB N N 18 2W2 CAK CAQ SING N N 19 2W2 CAQ OAF SING N N 20 2W2 OXT H1 SING N N 21 2W2 CAK H2 SING N N 22 2W2 CAK H3 SING N N 23 2W2 CAM H4 SING N N 24 2W2 CAM H5 SING N N 25 2W2 CAU H6 SING N N 26 2W2 OAF H7 SING N N 27 2W2 OAH H8 SING N N 28 2W2 N H9 SING N N 29 2W2 CA H11 SING N N 30 2W2 CB H12 SING N N 31 2W2 CB H13 SING N N 32 2W2 CG H14 SING N N 33 2W2 CG H15 SING N N 34 2W2 CD H16 SING N N 35 2W2 CD H17 SING N N 36 2W2 NE H18 SING N N 37 2W2 NH2 H19 SING N N 38 2W2 NH2 H20 SING N N 39 2W2 NH1 H21 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2W2 SMILES ACDLabs 12.01 "O=C(O)C(NC(C(=O)O)CCC(=O)O)CCCNC(=[N@H])N" 2W2 InChI InChI 1.03 "InChI=1S/C11H20N4O6/c12-11(13)14-5-1-2-6(9(18)19)15-7(10(20)21)3-4-8(16)17/h6-7,15H,1-5H2,(H,16,17)(H,18,19)(H,20,21)(H4,12,13,14)/t6-,7+/m0/s1" 2W2 InChIKey InChI 1.03 LMKYZBGVKHTLTN-NKWVEPMBSA-N 2W2 SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCC[C@H](N[C@H](CCC(O)=O)C(O)=O)C(O)=O" 2W2 SMILES CACTVS 3.385 "NC(=N)NCCC[CH](N[CH](CCC(O)=O)C(O)=O)C(O)=O" 2W2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)N[C@H](CCC(=O)O)C(=O)O" 2W2 SMILES "OpenEye OEToolkits" 1.7.6 "C(CC(C(=O)O)NC(CCC(=O)O)C(=O)O)CNC(=N)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2W2 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid" 2W2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[[(2S)-5-carbamimidamido-1-oxidanyl-1-oxidanylidene-pentan-2-yl]amino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2W2 "Create component" 2014-02-28 RCSB 2W2 "Modify synonyms" 2014-03-04 RCSB 2W2 "Initial release" 2014-10-22 RCSB 2W2 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2W2 _pdbx_chem_comp_synonyms.name Nopaline _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##