data_2YF # _chem_comp.id 2YF _chem_comp.name "N~6~-[(2R)-2,3,4,5-tetrahydropyridin-2-ylcarbonyl]-L-lysine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H21 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-14 _chem_comp.pdbx_modified_date 2014-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 255.313 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2YF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Q3B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2YF O2 O2 O 0 1 N N N -12.637 43.405 16.437 6.703 0.164 0.928 O2 2YF 1 2YF C11 C11 C 0 1 N N N -11.871 42.578 16.960 6.006 0.525 0.010 C11 2YF 2 2YF O1 O1 O 0 1 N Y N -12.156 42.035 18.172 6.294 1.662 -0.644 O1 2YF 3 2YF C C C 0 1 N N S -10.626 42.129 16.281 4.818 -0.302 -0.405 C 2YF 4 2YF N N N 0 1 N N N -10.757 42.317 14.836 4.979 -1.675 0.092 N 2YF 5 2YF C1 C1 C 0 1 N N N -9.449 42.896 16.842 3.542 0.306 0.181 C1 2YF 6 2YF C2 C2 C 0 1 N N N -8.113 42.509 16.253 2.325 -0.460 -0.341 C2 2YF 7 2YF C3 C3 C 0 1 N N N -7.028 43.366 16.876 1.049 0.149 0.245 C3 2YF 8 2YF C4 C4 C 0 1 N N N -5.635 42.908 16.488 -0.168 -0.617 -0.277 C4 2YF 9 2YF N1 N1 N 0 1 N N N -4.583 43.818 16.931 -1.389 -0.034 0.285 N1 2YF 10 2YF C5 C5 C 0 1 N N N -3.904 43.634 18.083 -2.592 -0.550 -0.038 C5 2YF 11 2YF O O O 0 1 N N N -4.071 42.676 18.814 -2.663 -1.496 -0.793 O 2YF 12 2YF C6 C6 C 0 1 N N R -2.984 44.752 18.495 -3.848 0.049 0.540 C6 2YF 13 2YF N2 N2 N 0 1 N N N -1.946 44.368 19.447 -4.924 -0.930 0.470 N2 2YF 14 2YF C10 C10 C 0 1 N N N -1.642 45.010 20.493 -6.114 -0.679 0.135 C10 2YF 15 2YF C9 C9 C 0 1 N N N -2.438 46.217 20.922 -6.617 0.678 -0.263 C9 2YF 16 2YF C8 C8 C 0 1 N N N -3.103 46.911 19.743 -5.621 1.754 0.180 C8 2YF 17 2YF C7 C7 C 0 1 N N N -3.905 45.821 19.085 -4.216 1.308 -0.248 C7 2YF 18 2YF H1 H1 H 0 1 N Y N -12.977 42.389 18.493 7.069 2.157 -0.343 H1 2YF 19 2YF H2 H2 H 0 1 N N N -10.475 41.060 16.491 4.747 -0.316 -1.493 H2 2YF 20 2YF H3 H3 H 0 1 N N N -11.543 41.797 14.502 5.779 -2.121 -0.331 H3 2YF 21 2YF H4 H4 H 0 1 N N N -10.891 43.288 14.637 5.047 -1.689 1.099 H4 2YF 22 2YF H6 H6 H 0 1 N N N -9.410 42.721 17.927 3.574 0.239 1.269 H6 2YF 23 2YF H7 H7 H 0 1 N N N -9.613 43.967 16.649 3.468 1.352 -0.116 H7 2YF 24 2YF H8 H8 H 0 1 N N N -7.911 41.448 16.464 2.293 -0.392 -1.429 H8 2YF 25 2YF H9 H9 H 0 1 N N N -8.130 42.670 15.165 2.398 -1.506 -0.044 H9 2YF 26 2YF H10 H10 H 0 1 N N N -7.164 44.405 16.542 1.082 0.082 1.333 H10 2YF 27 2YF H11 H11 H 0 1 N N N -7.124 43.317 17.971 0.976 1.195 -0.052 H11 2YF 28 2YF H12 H12 H 0 1 N N N -5.454 41.920 16.938 -0.200 -0.549 -1.364 H12 2YF 29 2YF H13 H13 H 0 1 N N N -5.587 42.826 15.392 -0.094 -1.663 0.021 H13 2YF 30 2YF H14 H14 H 0 1 N N N -4.357 44.607 16.360 -1.332 0.723 0.889 H14 2YF 31 2YF H15 H15 H 0 1 N N N -2.510 45.166 17.592 -3.673 0.316 1.582 H15 2YF 32 2YF H16 H16 H 0 1 N N N -0.800 44.689 21.088 -6.819 -1.497 0.133 H16 2YF 33 2YF H17 H17 H 0 1 N N N -1.763 46.929 21.418 -6.735 0.718 -1.346 H17 2YF 34 2YF H18 H18 H 0 1 N N N -3.216 45.896 21.630 -7.580 0.861 0.213 H18 2YF 35 2YF H19 H19 H 0 1 N N N -2.349 47.314 19.051 -5.867 2.702 -0.298 H19 2YF 36 2YF H20 H20 H 0 1 N N N -3.758 47.725 20.087 -5.658 1.867 1.263 H20 2YF 37 2YF H21 H21 H 0 1 N N N -4.514 46.257 18.280 -3.498 2.099 -0.032 H21 2YF 38 2YF H22 H22 H 0 1 N N N -4.564 45.356 19.833 -4.210 1.088 -1.315 H22 2YF 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YF N C SING N N 1 2YF C2 C1 SING N N 2 2YF C2 C3 SING N N 3 2YF C C1 SING N N 4 2YF C C11 SING N N 5 2YF O2 C11 DOUB N N 6 2YF C4 C3 SING N N 7 2YF C4 N1 SING N N 8 2YF N1 C5 SING N N 9 2YF C11 O1 SING N N 10 2YF C5 C6 SING N N 11 2YF C5 O DOUB N N 12 2YF C6 C7 SING N N 13 2YF C6 N2 SING N N 14 2YF C7 C8 SING N N 15 2YF N2 C10 DOUB N N 16 2YF C8 C9 SING N N 17 2YF C10 C9 SING N N 18 2YF O1 H1 SING N N 19 2YF C H2 SING N N 20 2YF N H3 SING N N 21 2YF N H4 SING N N 22 2YF C1 H6 SING N N 23 2YF C1 H7 SING N N 24 2YF C2 H8 SING N N 25 2YF C2 H9 SING N N 26 2YF C3 H10 SING N N 27 2YF C3 H11 SING N N 28 2YF C4 H12 SING N N 29 2YF C4 H13 SING N N 30 2YF N1 H14 SING N N 31 2YF C6 H15 SING N N 32 2YF C10 H16 SING N N 33 2YF C9 H17 SING N N 34 2YF C9 H18 SING N N 35 2YF C8 H19 SING N N 36 2YF C8 H20 SING N N 37 2YF C7 H21 SING N N 38 2YF C7 H22 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2YF SMILES ACDLabs 12.01 "O=C(NCCCCC(C(=O)O)N)C1N=CCCC1" 2YF InChI InChI 1.03 "InChI=1S/C12H21N3O3/c13-9(12(17)18)5-1-3-8-15-11(16)10-6-2-4-7-14-10/h7,9-10H,1-6,8,13H2,(H,15,16)(H,17,18)/t9-,10+/m0/s1" 2YF InChIKey InChI 1.03 KRPZACZJBBRBIT-VHSXEESVSA-N 2YF SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(=O)[C@H]1CCCC=N1)C(O)=O" 2YF SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)[CH]1CCCC=N1)C(O)=O" 2YF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1CC=N[C@H](C1)C(=O)NCCCC[C@@H](C(=O)O)N" 2YF SMILES "OpenEye OEToolkits" 1.7.6 "C1CC=NC(C1)C(=O)NCCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2YF "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-[(2R)-2,3,4,5-tetrahydropyridin-2-ylcarbonyl]-L-lysine" 2YF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[[(2R)-2,3,4,5-tetrahydropyridin-2-yl]carbonylamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2YF "Create component" 2014-04-14 RCSB 2YF "Initial release" 2014-04-23 RCSB #