data_2YH # _chem_comp.id 2YH _chem_comp.name N~5~-D-ornithyl-L-ornithine _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H22 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-14 _chem_comp.pdbx_modified_date 2014-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2YH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Q3D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2YH O3 O3 O 0 1 N N N 4.094 86.438 -6.552 1.533 -2.195 0.893 O3 2YH 1 2YH C6 C6 C 0 1 N N N 4.249 86.448 -7.769 1.677 -1.292 0.095 C6 2YH 2 2YH C7 C7 C 0 1 N N R 3.167 85.801 -8.593 3.046 -0.978 -0.450 C7 2YH 3 2YH N3 N3 N 0 1 N N N 3.481 85.478 -10.027 3.924 -2.142 -0.266 N3 2YH 4 2YH C8 C8 C 0 1 N N N 1.896 86.656 -8.502 3.629 0.223 0.297 C8 2YH 5 2YH C9 C9 C 0 1 N N N 0.683 85.783 -8.191 4.963 0.620 -0.338 C9 2YH 6 2YH C10 C10 C 0 1 N N N 0.608 84.504 -9.035 5.546 1.821 0.408 C10 2YH 7 2YH N2 N2 N 0 1 N N N 1.033 83.277 -8.289 6.827 2.202 -0.201 N2 2YH 8 2YH N1 N1 N 0 1 N N N 5.362 87.035 -8.334 0.610 -0.574 -0.308 N1 2YH 9 2YH C5 C5 C 0 1 N N N 6.502 87.110 -7.396 -0.722 -0.883 0.217 C5 2YH 10 2YH C4 C4 C 0 1 N N N 7.703 87.744 -8.102 -1.747 0.073 -0.397 C4 2YH 11 2YH C3 C3 C 0 1 N N N 9.019 87.361 -7.423 -3.138 -0.250 0.151 C3 2YH 12 2YH C2 C2 C 0 1 N N S 10.152 88.310 -7.805 -4.163 0.706 -0.463 C2 2YH 13 2YH N4 N4 N 0 1 N N N 10.411 88.277 -9.275 -3.879 2.078 -0.021 N4 2YH 14 2YH C1 C1 C 0 1 N N N 11.385 87.938 -7.039 -5.548 0.311 -0.019 C1 2YH 15 2YH O2 O2 O 0 1 N Y N 11.645 88.466 -5.972 -6.182 -0.705 -0.625 O2 2YH 16 2YH O1 O1 O 0 1 N N N 12.215 87.020 -7.524 -6.087 0.909 0.882 O1 2YH 17 2YH H1 H1 H 0 1 N N N 2.930 84.846 -8.102 2.970 -0.744 -1.512 H1 2YH 18 2YH H2 H2 H 0 1 N N N 4.311 84.921 -10.070 4.011 -2.379 0.711 H2 2YH 19 2YH H3 H3 H 0 1 N N N 2.718 84.971 -10.429 3.596 -2.931 -0.802 H3 2YH 20 2YH H5 H5 H 0 1 N N N 2.019 87.402 -7.703 2.934 1.061 0.235 H5 2YH 21 2YH H6 H6 H 0 1 N N N 1.736 87.169 -9.462 3.788 -0.041 1.342 H6 2YH 22 2YH H7 H7 H 0 1 N N N -0.226 86.374 -8.375 5.658 -0.218 -0.276 H7 2YH 23 2YH H8 H8 H 0 1 N N N 0.725 85.496 -7.130 4.804 0.884 -1.383 H8 2YH 24 2YH H9 H9 H 0 1 N N N 1.263 84.625 -9.911 4.852 2.659 0.347 H9 2YH 25 2YH H10 H10 H 0 1 N N N -0.431 84.367 -9.370 5.705 1.558 1.454 H10 2YH 26 2YH H11 H11 H 0 1 N N N 0.963 82.480 -8.889 7.233 2.994 0.275 H11 2YH 27 2YH H12 H12 H 0 1 N N N 1.980 83.383 -7.986 7.467 1.422 -0.214 H12 2YH 28 2YH H14 H14 H 0 1 N N N 5.394 87.373 -9.275 0.725 0.148 -0.946 H14 2YH 29 2YH H15 H15 H 0 1 N N N 6.222 87.723 -6.527 -0.984 -1.910 -0.039 H15 2YH 30 2YH H16 H16 H 0 1 N N N 6.767 86.097 -7.060 -0.721 -0.767 1.301 H16 2YH 31 2YH H17 H17 H 0 1 N N N 7.594 88.838 -8.079 -1.485 1.100 -0.142 H17 2YH 32 2YH H18 H18 H 0 1 N N N 7.726 87.400 -9.146 -1.748 -0.043 -1.481 H18 2YH 33 2YH H19 H19 H 0 1 N N N 8.880 87.394 -6.332 -3.400 -1.276 -0.105 H19 2YH 34 2YH H20 H20 H 0 1 N N N 9.292 86.340 -7.727 -3.138 -0.134 1.235 H20 2YH 35 2YH H21 H21 H 0 1 N N N 9.857 89.331 -7.522 -4.102 0.655 -1.550 H21 2YH 36 2YH H22 H22 H 0 1 N N N 11.156 88.906 -9.497 -3.930 2.152 0.984 H22 2YH 37 2YH H23 H23 H 0 1 N N N 10.666 87.349 -9.548 -2.982 2.390 -0.361 H23 2YH 38 2YH H25 H25 H 0 1 N Y N 12.458 88.111 -5.633 -7.069 -0.921 -0.305 H25 2YH 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YH N3 C7 SING N N 1 2YH N4 C2 SING N N 2 2YH C10 N2 SING N N 3 2YH C10 C9 SING N N 4 2YH C7 C8 SING N N 5 2YH C7 C6 SING N N 6 2YH C8 C9 SING N N 7 2YH N1 C6 SING N N 8 2YH N1 C5 SING N N 9 2YH C4 C3 SING N N 10 2YH C4 C5 SING N N 11 2YH C2 C3 SING N N 12 2YH C2 C1 SING N N 13 2YH C6 O3 DOUB N N 14 2YH O1 C1 DOUB N N 15 2YH C1 O2 SING N N 16 2YH C7 H1 SING N N 17 2YH N3 H2 SING N N 18 2YH N3 H3 SING N N 19 2YH C8 H5 SING N N 20 2YH C8 H6 SING N N 21 2YH C9 H7 SING N N 22 2YH C9 H8 SING N N 23 2YH C10 H9 SING N N 24 2YH C10 H10 SING N N 25 2YH N2 H11 SING N N 26 2YH N2 H12 SING N N 27 2YH N1 H14 SING N N 28 2YH C5 H15 SING N N 29 2YH C5 H16 SING N N 30 2YH C4 H17 SING N N 31 2YH C4 H18 SING N N 32 2YH C3 H19 SING N N 33 2YH C3 H20 SING N N 34 2YH C2 H21 SING N N 35 2YH N4 H22 SING N N 36 2YH N4 H23 SING N N 37 2YH O2 H25 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2YH SMILES ACDLabs 12.01 "O=C(O)C(N)CCCNC(=O)C(N)CCCN" 2YH InChI InChI 1.03 "InChI=1S/C10H22N4O3/c11-5-1-3-7(12)9(15)14-6-2-4-8(13)10(16)17/h7-8H,1-6,11-13H2,(H,14,15)(H,16,17)/t7-,8+/m1/s1" 2YH InChIKey InChI 1.03 MCMLHDBHZRLOED-SFYZADRCSA-N 2YH SMILES_CANONICAL CACTVS 3.385 "NCCC[C@@H](N)C(=O)NCCC[C@H](N)C(O)=O" 2YH SMILES CACTVS 3.385 "NCCC[CH](N)C(=O)NCCC[CH](N)C(O)=O" 2YH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(C[C@H](C(=O)NCCC[C@@H](C(=O)O)N)N)CN" 2YH SMILES "OpenEye OEToolkits" 1.7.6 "C(CC(C(=O)NCCCC(C(=O)O)N)N)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2YH "SYSTEMATIC NAME" ACDLabs 12.01 N~5~-D-ornithyl-L-ornithine 2YH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-5-[[(2R)-2,5-bis(azanyl)pentanoyl]amino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2YH "Create component" 2014-04-14 RCSB 2YH "Initial release" 2014-04-23 RCSB #