data_2YN # _chem_comp.id 2YN _chem_comp.name "(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H20 O30 P8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-17 _chem_comp.pdbx_modified_date 2014-08-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 819.995 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2YN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Q4D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2YN O55 O55 O 0 1 N N N 1.724 24.332 16.644 -6.675 -2.957 -1.491 O55 2YN 1 2YN PB5 PB5 P 0 1 N N N 3.077 23.578 16.160 -5.910 -2.865 -0.077 PB5 2YN 2 2YN O65 O65 O 0 1 N N N 4.024 24.620 15.689 -6.633 -1.931 0.815 O65 2YN 3 2YN O75 O75 O 0 1 N N N 3.528 22.572 17.162 -5.859 -4.324 0.601 O75 2YN 4 2YN O45 O45 O 0 1 N N N 2.558 22.756 14.857 -4.410 -2.329 -0.312 O45 2YN 5 2YN PA5 PA5 P 0 1 N N N 1.340 21.649 14.863 -3.268 -1.739 0.657 PA5 2YN 6 2YN O35 O35 O 0 1 N N N 0.281 22.050 15.809 -2.521 -2.952 1.407 O35 2YN 7 2YN O25 O25 O 0 1 N N N 1.921 20.286 14.925 -3.888 -0.845 1.661 O25 2YN 8 2YN O15 O15 O 0 1 N N N 0.771 21.935 13.349 -2.200 -0.908 -0.215 O15 2YN 9 2YN C5 C5 C 0 1 N N R 0.682 20.916 12.383 -1.123 -0.173 0.368 C5 2YN 10 2YN C4 C4 C 0 1 N N N -0.769 20.790 12.051 0.208 -0.720 -0.152 C4 2YN 11 2YN O14 O14 O 0 1 N N N -1.438 20.348 13.256 0.327 -2.100 0.200 O14 2YN 12 2YN PA4 PA4 P 0 1 N N N -2.675 21.156 13.925 0.486 -3.273 -0.891 PA4 2YN 13 2YN O34 O34 O 0 1 N N N -2.536 22.563 13.525 0.460 -4.702 -0.151 O34 2YN 14 2YN O24 O24 O 0 1 N N N -3.797 20.408 13.360 -0.630 -3.199 -1.861 O24 2YN 15 2YN O44 O44 O 0 1 N N N -2.413 20.919 15.364 1.885 -3.096 -1.669 O44 2YN 16 2YN C6 C6 C 0 1 N N S 1.508 21.318 11.164 -1.250 1.304 -0.009 C6 2YN 17 2YN O16 O16 O 0 1 N N N 2.887 21.292 11.556 -2.493 1.815 0.478 O16 2YN 18 2YN PA6 PA6 P 0 1 N N N 3.763 22.624 11.596 -3.624 2.433 -0.487 PA6 2YN 19 2YN O46 O46 O 0 1 N N N 2.819 23.753 11.557 -4.934 2.786 0.381 O46 2YN 20 2YN O26 O26 O 0 1 N N N 4.547 22.511 12.841 -3.063 3.773 -1.181 O26 2YN 21 2YN O36 O36 O 0 1 N N N 4.536 22.414 10.333 -3.976 1.446 -1.531 O36 2YN 22 2YN C1 C1 C 0 1 N N N 1.329 20.321 10.041 -0.096 2.091 0.616 C1 2YN 23 2YN O11 O11 O 0 1 N N N 2.050 20.836 8.844 -0.214 3.471 0.264 O11 2YN 24 2YN PA1 PA1 P 0 1 N N N 3.367 20.043 8.306 -0.373 4.644 1.355 PA1 2YN 25 2YN O21 O21 O 0 1 N N N 3.813 20.821 7.141 0.743 4.570 2.324 O21 2YN 26 2YN O31 O31 O 0 1 N N N 4.284 20.058 9.479 -0.347 6.073 0.614 O31 2YN 27 2YN O41 O41 O 0 1 N N N 2.775 18.708 8.006 -1.772 4.468 2.132 O41 2YN 28 2YN C2 C2 C 0 1 N N S -0.170 20.123 9.721 1.235 1.544 0.095 C2 2YN 29 2YN O12 O12 O 0 1 N N N -0.648 21.333 9.192 1.282 1.679 -1.327 O12 2YN 30 2YN PA2 PA2 P 0 1 N N N -1.081 21.461 7.612 2.406 2.543 -2.090 PA2 2YN 31 2YN O22 O22 O 0 1 N N N -0.871 22.890 7.366 2.076 2.580 -3.665 O22 2YN 32 2YN O32 O32 O 0 1 N N N -0.225 20.556 6.823 2.415 3.922 -1.554 O32 2YN 33 2YN O42 O42 O 0 1 N N N -2.497 21.006 7.720 3.849 1.868 -1.859 O42 2YN 34 2YN C3 C3 C 0 1 N N S -0.948 19.750 10.992 1.362 0.067 0.472 C3 2YN 35 2YN O13 O13 O 0 1 N N N -2.357 19.606 10.716 2.605 -0.444 -0.014 O13 2YN 36 2YN PA3 PA3 P 0 1 N N N -2.886 18.185 10.135 3.736 -1.062 0.950 PA3 2YN 37 2YN O23 O23 O 0 1 N N N -1.919 17.004 10.684 3.175 -2.402 1.645 O23 2YN 38 2YN O33 O33 O 0 1 N N N -2.889 18.197 8.643 4.088 -0.075 1.995 O33 2YN 39 2YN O43 O43 O 0 1 N N N -4.268 17.962 10.876 5.046 -1.415 0.083 O43 2YN 40 2YN PB3 PB3 P 0 1 N N N -5.541 18.878 10.495 6.576 -1.755 0.454 PB3 2YN 41 2YN O63 O63 O 0 1 N N N -6.681 17.946 10.488 6.688 -3.294 0.911 O63 2YN 42 2YN O73 O73 O 0 1 N N N -5.581 19.914 11.520 7.508 -1.508 -0.834 O73 2YN 43 2YN O53 O53 O 0 1 N N N -5.127 19.334 9.147 7.021 -0.878 1.561 O53 2YN 44 2YN H1 H1 H 0 1 N N N 1.823 25.269 16.525 -7.586 -3.273 -1.425 H1 2YN 45 2YN H2 H2 H 0 1 N N N 4.435 22.737 17.391 -5.398 -4.989 0.070 H2 2YN 46 2YN H3 H3 H 0 1 N N N 0.084 21.325 16.391 -2.092 -3.579 0.809 H3 2YN 47 2YN H4 H4 H 0 1 N N N 1.058 19.961 12.779 -1.158 -0.276 1.453 H4 2YN 48 2YN H5 H5 H 0 1 N N N -1.169 21.756 11.709 0.244 -0.617 -1.237 H5 2YN 49 2YN H6 H6 H 0 1 N N N -3.235 22.792 12.924 0.551 -5.457 -0.748 H6 2YN 50 2YN H7 H7 H 0 1 N N N -3.043 20.293 15.702 2.661 -3.134 -1.094 H7 2YN 51 2YN H8 H8 H 0 1 N N N 1.210 22.322 10.827 -1.214 1.407 -1.093 H8 2YN 52 2YN H9 H9 H 0 1 N N N 2.862 24.173 10.706 -5.658 3.164 -0.137 H9 2YN 53 2YN H10 H10 H 0 1 N N N 5.452 22.315 12.629 -2.812 4.465 -0.555 H10 2YN 54 2YN H11 H11 H 0 1 N N N 1.759 19.354 10.342 -0.131 1.988 1.701 H11 2YN 55 2YN H12 H12 H 0 1 N N N 5.045 20.591 9.280 -0.439 6.828 1.212 H12 2YN 56 2YN H13 H13 H 0 1 N N N 2.779 18.563 7.067 -2.549 4.505 1.558 H13 2YN 57 2YN H14 H14 H 0 1 N N N -0.272 19.309 8.988 2.057 2.105 0.540 H14 2YN 58 2YN H15 H15 H 0 1 N N N -0.191 23.003 6.713 2.714 3.085 -4.188 H15 2YN 59 2YN H16 H16 H 0 1 N N N -2.604 20.189 7.248 3.916 0.960 -2.187 H16 2YN 60 2YN H17 H17 H 0 1 N N N -0.552 18.795 11.367 1.327 -0.036 1.557 H17 2YN 61 2YN H18 H18 H 0 1 N N N -1.535 16.541 9.949 2.925 -3.094 1.019 H18 2YN 62 2YN H19 H19 H 0 1 N N N -6.961 17.795 9.593 6.412 -3.927 0.234 H19 2YN 63 2YN H20 H20 H 0 1 N N N -5.324 20.746 11.140 8.445 -1.693 -0.683 H20 2YN 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YN O32 PA2 DOUB N N 1 2YN O21 PA1 DOUB N N 2 2YN O22 PA2 SING N N 3 2YN PA2 O42 SING N N 4 2YN PA2 O12 SING N N 5 2YN O41 PA1 SING N N 6 2YN PA1 O11 SING N N 7 2YN PA1 O31 SING N N 8 2YN O33 PA3 DOUB N N 9 2YN O11 C1 SING N N 10 2YN O53 PB3 DOUB N N 11 2YN O12 C2 SING N N 12 2YN C2 C1 SING N N 13 2YN C2 C3 SING N N 14 2YN C1 C6 SING N N 15 2YN PA3 O23 SING N N 16 2YN PA3 O13 SING N N 17 2YN PA3 O43 SING N N 18 2YN O36 PA6 DOUB N N 19 2YN O63 PB3 SING N N 20 2YN PB3 O43 SING N N 21 2YN PB3 O73 SING N N 22 2YN O13 C3 SING N N 23 2YN C3 C4 SING N N 24 2YN C6 O16 SING N N 25 2YN C6 C5 SING N N 26 2YN O16 PA6 SING N N 27 2YN O46 PA6 SING N N 28 2YN PA6 O26 SING N N 29 2YN C4 C5 SING N N 30 2YN C4 O14 SING N N 31 2YN C5 O15 SING N N 32 2YN O14 PA4 SING N N 33 2YN O15 PA5 SING N N 34 2YN O24 PA4 DOUB N N 35 2YN O34 PA4 SING N N 36 2YN PA4 O44 SING N N 37 2YN O45 PA5 SING N N 38 2YN O45 PB5 SING N N 39 2YN PA5 O25 DOUB N N 40 2YN PA5 O35 SING N N 41 2YN O65 PB5 DOUB N N 42 2YN PB5 O55 SING N N 43 2YN PB5 O75 SING N N 44 2YN O55 H1 SING N N 45 2YN O75 H2 SING N N 46 2YN O35 H3 SING N N 47 2YN C5 H4 SING N N 48 2YN C4 H5 SING N N 49 2YN O34 H6 SING N N 50 2YN O44 H7 SING N N 51 2YN C6 H8 SING N N 52 2YN O46 H9 SING N N 53 2YN O26 H10 SING N N 54 2YN C1 H11 SING N N 55 2YN O31 H12 SING N N 56 2YN O41 H13 SING N N 57 2YN C2 H14 SING N N 58 2YN O22 H15 SING N N 59 2YN O42 H16 SING N N 60 2YN C3 H17 SING N N 61 2YN O23 H18 SING N N 62 2YN O63 H19 SING N N 63 2YN O73 H20 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2YN SMILES ACDLabs 12.01 "O=P(O)(O)OC1C(OP(=O)(O)O)C(OP(=O)(O)O)C(OP(=O)(O)OP(=O)(O)O)C(OP(=O)(O)O)C1OP(=O)(OP(=O)(O)O)O" 2YN InChI InChI 1.03 ;InChI=1S/C6H20O30P8/c7-37(8,9)29-1-2(30-38(10,11)12)5(33-43(25,26)35-41(19,20)21)4(32-40(16,17)18)6(3(1)31-39(13,14)15)34-44(27,28)36-42(22,23)24/h1-6H,(H,25,26)(H,27,28)(H2,7,8,9)(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)/t1-,2-,3-,4-,5+,6-/m0/s1 ; 2YN InChIKey InChI 1.03 HHQOOERQSFJGEP-ZSIQDKGESA-N 2YN SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)O[C@H]1[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H]1O[P](O)(O)=O" 2YN SMILES CACTVS 3.385 "O[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 2YN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[C@H]1([C@H](C([C@H]([C@H](C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O" 2YN SMILES "OpenEye OEToolkits" 1.7.6 "C1(C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2YN "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]" 2YN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R,3S,4S,6S)-3-[oxidanyl(phosphonooxy)phosphoryl]oxy-2,4,5,6-tetraphosphonooxy-cyclohexyl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2YN "Create component" 2014-04-17 RCSB 2YN "Initial release" 2014-08-06 RCSB #