data_2ZM # _chem_comp.id 2ZM _chem_comp.name 5-nitro-1H-benzimidazole _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H5 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-09-20 _chem_comp.pdbx_modified_date 2014-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.133 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2ZM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MSA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2ZM O1 O1 O -1 1 N N N 4.323 -28.004 -29.582 2.939 1.372 0.002 O1 2ZM 1 2ZM N2 N2 N 1 1 N N N 4.426 -28.714 -30.575 2.564 0.214 -0.002 N2 2ZM 2 2ZM O3 O3 O 0 1 N N N 4.749 -29.888 -30.432 3.380 -0.691 -0.003 O3 2ZM 3 2ZM C4 C4 C 0 1 Y N N 4.199 -28.195 -31.800 1.116 -0.096 -0.001 C4 2ZM 4 2ZM C5 C5 C 0 1 Y N N 3.509 -26.982 -31.911 0.697 -1.419 0.000 C5 2ZM 5 2ZM C6 C6 C 0 1 Y N N 3.253 -26.385 -33.140 -0.647 -1.725 0.002 C6 2ZM 6 2ZM C7 C7 C 0 1 Y N N 3.724 -27.068 -34.260 -1.586 -0.702 0.003 C7 2ZM 7 2ZM N8 N8 N 0 1 Y N N 3.627 -26.762 -35.567 -2.966 -0.664 -0.001 N8 2ZM 8 2ZM C9 C9 C 0 1 Y N N 4.232 -27.748 -36.268 -3.334 0.646 -0.004 C9 2ZM 9 2ZM N10 N10 N 0 1 Y N N 4.716 -28.680 -35.421 -2.279 1.407 -0.002 N10 2ZM 10 2ZM C11 C11 C 0 1 Y N N 4.408 -28.286 -34.164 -1.161 0.637 0.002 C11 2ZM 11 2ZM C12 C12 C 0 1 Y N N 4.671 -28.883 -32.928 0.207 0.924 0.005 C12 2ZM 12 2ZM H1 H1 H 0 1 N N N 3.164 -26.494 -31.012 1.428 -2.213 -0.000 H1 2ZM 13 2ZM H2 H2 H 0 1 N N N 2.721 -25.449 -33.222 -0.969 -2.756 0.002 H2 2ZM 14 2ZM H3 H3 H 0 1 N N N 3.186 -25.951 -35.951 -3.563 -1.429 -0.002 H3 2ZM 15 2ZM H4 H4 H 0 1 N N N 4.315 -27.784 -37.344 -4.354 1.002 -0.008 H4 2ZM 16 2ZM H6 H6 H 0 1 N N N 5.206 -29.818 -32.846 0.544 1.950 0.005 H6 2ZM 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2ZM C9 N8 SING Y N 1 2ZM C9 N10 DOUB Y N 2 2ZM N8 C7 SING Y N 3 2ZM N10 C11 SING Y N 4 2ZM C7 C11 DOUB Y N 5 2ZM C7 C6 SING Y N 6 2ZM C11 C12 SING Y N 7 2ZM C6 C5 DOUB Y N 8 2ZM C12 C4 DOUB Y N 9 2ZM C5 C4 SING Y N 10 2ZM C4 N2 SING N N 11 2ZM N2 O3 DOUB N N 12 2ZM N2 O1 SING N N 13 2ZM C5 H1 SING N N 14 2ZM C6 H2 SING N N 15 2ZM N8 H3 SING N N 16 2ZM C9 H4 SING N N 17 2ZM C12 H6 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2ZM SMILES ACDLabs 12.01 "[O-][N+](=O)c1cc2ncnc2cc1" 2ZM InChI InChI 1.03 "InChI=1S/C7H5N3O2/c11-10(12)5-1-2-6-7(3-5)9-4-8-6/h1-4H,(H,8,9)" 2ZM InChIKey InChI 1.03 XPAZGLFMMUODDK-UHFFFAOYSA-N 2ZM SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1ccc2[nH]cnc2c1" 2ZM SMILES CACTVS 3.385 "[O-][N+](=O)c1ccc2[nH]cnc2c1" 2ZM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc2c(cc1[N+](=O)[O-])nc[nH]2" 2ZM SMILES "OpenEye OEToolkits" 1.7.6 "c1cc2c(cc1[N+](=O)[O-])nc[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2ZM "SYSTEMATIC NAME" ACDLabs 12.01 5-nitro-1H-benzimidazole 2ZM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 5-nitro-1H-benzimidazole # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2ZM "Create component" 2013-09-20 RCSB 2ZM "Initial release" 2014-02-19 RCSB #