data_312 # _chem_comp.id 312 _chem_comp.name "2-(5-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-2'-METHOXY-6-OXIDO-1,1'-BIPHENYL-3-YL)SUCCINATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H20 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_17312 _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 312 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O2Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 312 C1 C1 C 0 1 Y N N 44.279 -3.053 25.951 5.965 -0.285 -0.012 C1 312 1 312 C2 C2 C 0 1 Y N N 44.594 -1.659 25.997 5.776 -1.431 0.770 C2 312 2 312 C3 C3 C 0 1 Y N N 44.524 -0.907 27.185 4.517 -1.868 1.067 C3 312 3 312 C4 C4 C 0 1 Y N N 44.112 -1.570 28.321 3.409 -1.175 0.594 C4 312 4 312 C5 C5 C 0 1 Y N N 43.789 -2.872 28.325 3.579 -0.021 -0.193 C5 312 5 312 C6 C6 C 0 1 Y N N 43.859 -3.665 27.173 4.868 0.421 -0.494 C6 312 6 312 C7 C7 C 0 1 N N N 44.353 -3.773 24.740 7.334 0.177 -0.325 C7 312 7 312 N1 N1 N 0 1 N N N 43.912 -5.016 24.690 8.386 -0.498 0.136 N1 312 8 312 N2 N2 N 1 1 N N N 44.865 -3.200 23.667 7.515 1.267 -1.068 N2 312 9 312 N3 N3 N 0 1 Y N N 43.927 -1.147 29.527 2.047 -1.358 0.718 N3 312 10 312 N4 N4 N 0 1 Y N N 43.413 -3.296 29.520 2.342 0.434 -0.511 N4 312 11 312 C8 C8 C 0 1 Y N N 43.526 -2.169 30.219 1.436 -0.346 0.027 C8 312 12 312 "C1'" "C1'" C 0 1 Y N N 43.249 -2.092 31.619 -0.025 -0.164 -0.098 "C1'" 312 13 312 "C2'" "C2'" C 0 1 Y N N 42.892 -3.229 32.365 -0.579 1.116 -0.037 "C2'" 312 14 312 "C3'" "C3'" C 0 1 Y N N 42.623 -3.166 33.734 -1.943 1.287 -0.155 "C3'" 312 15 312 CVX "C31'" C 0 1 N N R 42.229 -4.439 34.527 -2.533 2.673 -0.089 CVX 312 16 312 CWX "C32'" C 0 1 N N N 40.786 -4.723 34.064 -1.960 3.516 -1.199 CWX 312 17 312 OXX "O33'" O 0 1 N N N 40.687 -5.497 33.119 -1.148 3.036 -1.972 OXX 312 18 312 OYX "O34'" O -1 1 N N N 39.860 -4.165 34.637 -2.308 4.678 -1.324 OYX 312 19 312 C6X "C42'" C 0 1 N N N 42.380 -4.292 36.148 -2.193 3.308 1.261 C6X 312 20 312 C7X "C43'" C 0 1 N N N 43.228 -5.421 36.850 -2.884 4.642 1.377 C7X 312 21 312 O8X "O44'" O 0 1 N N N 43.069 -6.588 36.512 -3.615 5.066 0.422 O8X 312 22 312 O9X "O45'" O -1 1 N N N 44.024 -5.080 37.724 -2.737 5.347 2.429 O9X 312 23 312 "C4'" "C4'" C 0 1 Y N N 42.720 -1.960 34.372 -2.772 0.196 -0.333 "C4'" 312 24 312 "C5'" "C5'" C 0 1 Y N N 43.073 -0.816 33.724 -2.237 -1.088 -0.396 "C5'" 312 25 312 "C6'" "C6'" C 0 1 Y N N 43.329 -0.875 32.348 -0.858 -1.274 -0.272 "C6'" 312 26 312 "O6'" "O6'" O -1 1 N N N 43.626 0.298 31.668 -0.329 -2.522 -0.332 "O6'" 312 27 312 C1B "C1''" C 0 1 Y N N 43.248 0.309 34.525 -3.130 -2.257 -0.587 C1B 312 28 312 C2B "C2''" C 0 1 Y N N 42.211 0.956 35.249 -3.246 -3.224 0.417 C2B 312 29 312 C3B "C3''" C 0 1 Y N N 42.503 2.076 36.045 -4.083 -4.312 0.230 C3B 312 30 312 C4B "C4''" C 0 1 Y N N 43.788 2.562 36.131 -4.796 -4.443 -0.946 C4B 312 31 312 C5B "C5''" C 0 1 Y N N 44.812 1.956 35.443 -4.679 -3.491 -1.944 C5B 312 32 312 C6B "C6''" C 0 1 Y N N 44.546 0.833 34.644 -3.850 -2.402 -1.771 C6B 312 33 312 O2B "O2''" O 0 1 N N N 40.908 0.489 35.184 -2.545 -3.093 1.573 O2B 312 34 312 CME CME C 0 1 N N N 39.783 1.326 35.489 -2.877 -4.220 2.387 CME 312 35 312 HC2 HC2 H 0 1 N N N 44.922 -1.156 25.104 6.633 -1.974 1.141 HC2 312 36 312 HC3 HC3 H 0 1 N N N 44.773 0.145 27.207 4.382 -2.753 1.670 HC3 312 37 312 HC6 HC6 H 0 1 N N N 43.601 -4.714 27.222 5.013 1.306 -1.097 HC6 312 38 312 HH11 HH11 H 0 0 N N N 43.569 -5.438 25.545 9.284 -0.195 -0.069 HH11 312 39 312 HH12 HH12 H 0 0 N N N 43.936 -5.624 23.900 8.253 -1.292 0.678 HH12 312 40 312 HH21 HH21 H 0 0 N N N 45.236 -2.265 23.720 6.749 1.758 -1.404 HH21 312 41 312 HH22 HH22 H 0 0 N N N 44.968 -3.672 22.797 8.414 1.570 -1.274 HH22 312 42 312 HN3 HN3 H 0 1 N N N 44.044 -0.233 29.891 1.605 -2.072 1.204 HN3 312 43 312 "HC2'" "HC2'" H 0 0 N N N 42.821 -4.186 31.866 0.062 1.975 0.102 "HC2'" 312 44 312 H31B H31B H 0 0 N N N 42.862 -5.247 34.192 -3.615 2.613 -0.200 H31B 312 45 312 H42A H42A H 0 0 N N N 42.869 -3.371 36.418 -2.530 2.654 2.065 H42A 312 46 312 H42B H42B H 0 0 N N N 41.403 -4.269 36.615 -1.115 3.449 1.335 H42B 312 47 312 "HC4'" "HC4'" H 0 0 N N N 42.505 -1.874 35.424 -3.839 0.340 -0.425 "HC4'" 312 48 312 H3B "H3''" H 0 1 N N N 41.723 2.577 36.599 -4.178 -5.059 1.005 H3B 312 49 312 H4B "H4''" H 0 1 N N N 43.984 3.427 36.751 -5.447 -5.294 -1.089 H4B 312 50 312 H5B "H5''" H 0 1 N N N 45.812 2.352 35.525 -5.239 -3.601 -2.861 H5B 312 51 312 H6B "H6''" H 0 1 N N N 45.354 0.368 34.102 -3.761 -1.660 -2.551 H6B 312 52 312 HME1 HME1 H 0 0 N N N 38.979 1.113 34.799 -2.336 -4.159 3.331 HME1 312 53 312 HME2 HME2 H 0 0 N N N 40.033 2.377 35.420 -3.950 -4.223 2.583 HME2 312 54 312 HME3 HME3 H 0 0 N N N 39.446 1.109 36.495 -2.600 -5.137 1.868 HME3 312 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 312 C1 C2 DOUB Y N 1 312 C1 C6 SING Y N 2 312 C1 C7 SING N N 3 312 C2 C3 SING Y N 4 312 C2 HC2 SING N N 5 312 C3 C4 DOUB Y N 6 312 C3 HC3 SING N N 7 312 C4 C5 SING Y N 8 312 C4 N3 SING Y N 9 312 C5 C6 DOUB Y N 10 312 C5 N4 SING Y N 11 312 C6 HC6 SING N N 12 312 C7 N1 SING N N 13 312 C7 N2 DOUB N N 14 312 N1 HH11 SING N N 15 312 N1 HH12 SING N N 16 312 N2 HH21 SING N N 17 312 N2 HH22 SING N N 18 312 N3 C8 SING Y N 19 312 N3 HN3 SING N N 20 312 N4 C8 DOUB Y N 21 312 C8 "C1'" SING Y N 22 312 "C1'" "C2'" DOUB Y N 23 312 "C1'" "C6'" SING Y N 24 312 "C2'" "C3'" SING Y N 25 312 "C2'" "HC2'" SING N N 26 312 "C3'" CVX SING N N 27 312 "C3'" "C4'" DOUB Y N 28 312 CVX CWX SING N N 29 312 CVX C6X SING N N 30 312 CVX H31B SING N N 31 312 CWX OXX DOUB N N 32 312 CWX OYX SING N N 33 312 C6X C7X SING N N 34 312 C6X H42A SING N N 35 312 C6X H42B SING N N 36 312 C7X O8X DOUB N N 37 312 C7X O9X SING N N 38 312 "C4'" "C5'" SING Y N 39 312 "C4'" "HC4'" SING N N 40 312 "C5'" "C6'" DOUB Y N 41 312 "C5'" C1B SING Y N 42 312 "C6'" "O6'" SING N N 43 312 C1B C2B DOUB Y N 44 312 C1B C6B SING Y N 45 312 C2B C3B SING Y N 46 312 C2B O2B SING N N 47 312 C3B C4B DOUB Y N 48 312 C3B H3B SING N N 49 312 C4B C5B SING Y N 50 312 C4B H4B SING N N 51 312 C5B C6B DOUB Y N 52 312 C5B H5B SING N N 53 312 C6B H6B SING N N 54 312 O2B CME SING N N 55 312 CME HME1 SING N N 56 312 CME HME2 SING N N 57 312 CME HME3 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 312 SMILES ACDLabs 10.04 "[O-]C(=O)CC(C([O-])=O)c4cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])c(c3ccccc3OC)c4" 312 SMILES_CANONICAL CACTVS 3.341 "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(N)=[NH2+])[C@@H](CC([O-])=O)C([O-])=O" 312 SMILES CACTVS 3.341 "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(N)=[NH2+])[CH](CC([O-])=O)C([O-])=O" 312 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)[C@@H](CC(=O)[O-])C(=O)[O-]" 312 SMILES "OpenEye OEToolkits" 1.5.0 "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)C(CC(=O)[O-])C(=O)[O-]" 312 InChI InChI 1.03 "InChI=1S/C25H22N4O6/c1-35-20-5-3-2-4-14(20)16-8-13(15(25(33)34)11-21(30)31)9-17(22(16)32)24-28-18-7-6-12(23(26)27)10-19(18)29-24/h2-10,15,32H,11H2,1H3,(H3,26,27)(H,28,29)(H,30,31)(H,33,34)/p-2/t15-/m1/s1" 312 InChIKey InChI 1.03 HVNXYZZCSQONQC-OAHLLOKOSA-L # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 312 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-2-(5-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-2'-methoxy-6-oxidobiphenyl-3-yl)butanedioate" 312 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[3-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-5-(2-methoxyphenyl)-4-oxido-phenyl]butanedioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 312 "Create component" 2003-03-14 RCSB 312 "Modify aromatic_flag" 2011-06-04 RCSB 312 "Modify descriptor" 2011-06-04 RCSB 312 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 312 _pdbx_chem_comp_synonyms.name CRA_17312 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##