data_32U
#
_chem_comp.id 32U
_chem_comp.name "D-phenylalanyl-N-{4-[amino(iminio)methyl]benzyl}-L-prolinamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H28 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2007-11-22
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 394.490
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 32U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ZDA
_chem_comp.pdbx_subcomponent_list "DPN PRO 00S"
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
32U N13 N13 N 0 1 N N N 16.407 -15.969 23.217 -4.153 -1.912 0.748 N DPN 1
32U C5 C5 C 0 1 N N R 17.707 -15.263 23.293 -3.803 -0.580 0.238 CA DPN 2
32U C14 C14 C 0 1 N N N 17.642 -13.900 22.652 -2.353 -0.564 -0.172 C DPN 3
32U O32 O32 O 0 1 N N N 16.747 -13.138 23.007 -1.776 -1.606 -0.400 O DPN 4
32U C33 C33 C 0 1 N N N 18.200 -15.178 24.766 -4.679 -0.251 -0.973 CB DPN 5
32U C6 C6 C 0 1 Y N N 19.633 -14.678 24.832 -6.118 -0.146 -0.538 CG DPN 6
32U C8 C8 C 0 1 Y N N 20.702 -15.489 24.440 -6.925 -1.268 -0.544 CD1 DPN 7
32U C12 C12 C 0 1 Y N N 19.899 -13.391 25.291 -6.629 1.071 -0.129 CD2 DPN 8
32U C9 C9 C 0 1 Y N N 22.008 -15.006 24.509 -8.245 -1.172 -0.145 CE1 DPN 9
32U C11 C11 C 0 1 Y N N 21.197 -12.907 25.362 -7.950 1.169 0.266 CE2 DPN 10
32U C10 C10 C 0 1 Y N N 22.270 -13.718 24.967 -8.758 0.047 0.260 CZ DPN 11
32U N1 N1 N 0 1 N N N 18.534 -13.495 21.702 -1.697 0.608 -0.286 N PRO 12
32U C1 C1 C 0 1 N N S 18.402 -12.188 21.106 -0.289 0.768 -0.675 CA PRO 13
32U C7 C7 C 0 1 N N N 17.055 -12.099 20.411 0.598 0.036 0.299 C PRO 14
32U O22 O22 O 0 1 N N N 16.607 -13.059 19.798 0.109 -0.565 1.232 O PRO 15
32U C2 C2 C 0 1 N N N 19.493 -12.258 19.996 0.027 2.278 -0.644 CB PRO 16
32U C3 C3 C 0 1 N N N 20.554 -13.151 20.684 -1.062 2.841 0.308 CG PRO 17
32U C4 C4 C 0 1 N N N 19.715 -14.279 21.340 -2.276 1.943 -0.046 CD PRO 18
32U N23 N23 N 0 1 N N N 16.440 -10.894 20.488 1.936 0.048 0.133 N23 00S 19
32U C24 C24 C 0 1 N N N 15.161 -10.826 19.749 2.798 -0.664 1.079 C16 00S 20
32U C25 C25 C 0 1 Y N N 14.056 -10.814 20.821 4.239 -0.494 0.672 C17 00S 21
32U C26 C26 C 0 1 Y N N 13.633 -12.011 21.385 4.821 -1.402 -0.195 C22 00S 22
32U C27 C27 C 0 1 Y N N 12.636 -12.028 22.357 6.140 -1.252 -0.572 C21 00S 23
32U C28 C28 C 0 1 Y N N 12.038 -10.838 22.783 6.886 -0.182 -0.077 C24 00S 24
32U C21 C21 C 0 1 N N N 10.885 -10.829 23.903 8.301 -0.015 -0.478 C27 00S 25
32U N46 N46 N 1 1 N N N 10.595 -9.697 24.528 9.039 -1.082 -0.776 N35 00S 26
32U N47 N47 N 0 1 N N N 10.235 -11.934 24.195 8.836 1.203 -0.540 N34 00S 27
32U C29 C29 C 0 1 Y N N 12.472 -9.648 22.210 6.293 0.730 0.796 C19 00S 28
32U C30 C30 C 0 1 Y N N 13.472 -9.623 21.235 4.972 0.572 1.161 C18 00S 29
32U H113 H113 H 0 0 N N N 16.489 -16.866 23.651 -4.009 -2.619 0.042 H DPN 30
32U H213 H213 H 0 0 N N N 15.708 -15.432 23.690 -3.634 -2.126 1.586 H2 DPN 31
32U H5 H5 H 0 1 N N N 18.441 -15.849 22.721 -3.968 0.163 1.018 HA DPN 32
32U H133 H133 H 0 0 N N N 17.553 -14.482 25.320 -4.360 0.697 -1.405 HB2 DPN 33
32U H233 H233 H 0 0 N N N 18.149 -16.179 25.218 -4.581 -1.041 -1.718 HB3 DPN 34
32U H8 H8 H 0 1 N N N 20.516 -16.491 24.083 -6.525 -2.220 -0.859 HD1 DPN 35
32U H12A H12A H 0 0 N N N 19.080 -12.758 25.597 -5.997 1.947 -0.120 HD2 DPN 36
32U H9 H9 H 0 1 N N N 22.827 -15.640 24.203 -8.876 -2.048 -0.149 HE1 DPN 37
32U H11 H11 H 0 1 N N N 21.381 -11.905 25.722 -8.351 2.121 0.582 HE2 DPN 38
32U H10 H10 H 0 1 N N N 23.284 -13.349 25.017 -9.789 0.122 0.571 HZ DPN 39
32U H1 H1 H 0 1 N N N 18.491 -11.352 21.815 -0.136 0.378 -1.681 HA PRO 40
32U H12 H12 H 0 1 N N N 19.887 -11.266 19.732 1.023 2.453 -0.237 HB2 PRO 41
32U H22 H22 H 0 1 N N N 19.114 -12.700 19.062 -0.067 2.715 -1.638 HB3 PRO 42
32U H13 H13 H 0 1 N N N 21.272 -13.556 19.956 -0.771 2.717 1.351 HG2 PRO 43
32U H23 H23 H 0 1 N N N 21.128 -12.588 21.435 -1.273 3.887 0.085 HG3 PRO 44
32U H14 H14 H 0 1 N N N 19.491 -15.109 20.653 -2.773 2.313 -0.942 HD2 PRO 45
32U H24 H24 H 0 1 N N N 20.211 -14.741 22.206 -2.976 1.905 0.789 HD3 PRO 46
32U HN23 HN23 H 0 0 N N N 16.817 -10.121 20.998 2.327 0.529 -0.613 HN23 00S 47
32U H124 H124 H 0 0 N N N 15.116 -9.915 19.134 2.653 -0.257 2.080 H16 00S 48
32U H224 H224 H 0 0 N N N 15.049 -11.696 19.085 2.543 -1.723 1.077 H16A 00S 49
32U H26 H26 H 0 1 N N N 14.083 -12.940 21.066 4.243 -2.230 -0.577 H22 00S 50
32U H27 H27 H 0 1 N N N 12.322 -12.968 22.785 6.594 -1.961 -1.248 H21 00S 51
32U H146 H146 H 0 0 N N N 9.879 -9.680 25.226 9.967 -0.972 -1.038 HN35 00S 52
32U H147 H147 H 0 0 N N N 9.518 -11.923 24.892 8.298 1.981 -0.323 HN34 00S 53
32U H247 H247 H 0 0 N N N 10.458 -12.785 23.720 9.763 1.313 -0.803 HN3A 00S 54
32U H29 H29 H 0 1 N N N 12.024 -8.718 22.527 6.866 1.561 1.183 H19 00S 55
32U H30 H30 H 0 1 N N N 13.789 -8.684 20.806 4.510 1.280 1.834 H18 00S 56
32U H246 H246 H 0 0 N N N 11.092 -8.859 24.302 8.650 -1.969 -0.730 H246 00S 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
32U C24 N23 SING N N 1
32U C24 C25 SING N N 2
32U O22 C7 DOUB N N 3
32U C2 C3 SING N N 4
32U C2 C1 SING N N 5
32U C7 N23 SING N N 6
32U C7 C1 SING N N 7
32U C3 C4 SING N N 8
32U C25 C30 DOUB Y N 9
32U C25 C26 SING Y N 10
32U C1 N1 SING N N 11
32U C30 C29 SING Y N 12
32U C4 N1 SING N N 13
32U C26 C27 DOUB Y N 14
32U N1 C14 SING N N 15
32U C29 C28 DOUB Y N 16
32U C27 C28 SING Y N 17
32U C14 O32 DOUB N N 18
32U C14 C5 SING N N 19
32U C28 C21 SING N N 20
32U N13 C5 SING N N 21
32U C5 C33 SING N N 22
32U C21 N47 SING N N 23
32U C21 N46 DOUB N N 24
32U C8 C9 DOUB Y N 25
32U C8 C6 SING Y N 26
32U C9 C10 SING Y N 27
32U C33 C6 SING N N 28
32U C6 C12 DOUB Y N 29
32U C10 C11 DOUB Y N 30
32U C12 C11 SING Y N 31
32U C1 H1 SING N N 32
32U N23 HN23 SING N N 33
32U C24 H124 SING N N 34
32U C24 H224 SING N N 35
32U C26 H26 SING N N 36
32U C27 H27 SING N N 37
32U N46 H146 SING N N 38
32U N46 H246 SING N N 39
32U N47 H147 SING N N 40
32U N47 H247 SING N N 41
32U C29 H29 SING N N 42
32U C30 H30 SING N N 43
32U C2 H12 SING N N 44
32U C2 H22 SING N N 45
32U C3 H13 SING N N 46
32U C3 H23 SING N N 47
32U C4 H14 SING N N 48
32U C4 H24 SING N N 49
32U C5 H5 SING N N 50
32U N13 H113 SING N N 51
32U N13 H213 SING N N 52
32U C33 H133 SING N N 53
32U C33 H233 SING N N 54
32U C8 H8 SING N N 55
32U C9 H9 SING N N 56
32U C10 H10 SING N N 57
32U C11 H11 SING N N 58
32U C12 H12A SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
32U SMILES ACDLabs 12.01 "O=C(NCc1ccc(C(=[NH2+])\\N)cc1)C3N(C(=O)C(N)Cc2ccccc2)CCC3"
32U InChI InChI 1.03 "InChI=1S/C22H27N5O2/c23-18(13-15-5-2-1-3-6-15)22(29)27-12-4-7-19(27)21(28)26-14-16-8-10-17(11-9-16)20(24)25/h1-3,5-6,8-11,18-19H,4,7,12-14,23H2,(H3,24,25)(H,26,28)/p+1/t18-,19+/m1/s1"
32U InChIKey InChI 1.03 VZFTWWJAUZOJDH-MOPGFXCFSA-O
32U SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccc(cc3)C(N)=[NH2+]"
32U SMILES CACTVS 3.385 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccc(cc3)C(N)=[NH2+]"
32U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)NCc3ccc(cc3)C(=[NH2+])N)N"
32U SMILES "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCc3ccc(cc3)C(=[NH2+])N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
32U "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-N-{4-[amino(iminio)methyl]benzyl}-L-prolinamide"
32U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[4-[[[(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]methyl]phenyl]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
32U "Create component" 2007-11-22 PDBJ
32U "Modify subcomponent list" 2010-11-15 RCSB
32U "Modify aromatic_flag" 2011-06-04 RCSB
32U "Modify descriptor" 2011-06-04 RCSB
32U "Modify descriptor" 2012-01-05 RCSB
#