data_34V # _chem_comp.id 34V _chem_comp.name beta-L-ribulofuranose _chem_comp.type "L-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-L-ribulose; L-ribulose; ribulose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-06-17 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 34V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4QE4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 34V beta-L-ribulose PDB ? 2 34V L-ribulose PDB ? 3 34V ribulose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 34V C1 C1 C 0 1 N N N -11.614 -16.285 -45.883 -1.478 -0.842 -0.464 C1 34V 1 34V O1 O1 O 0 1 N N N -11.309 -15.136 -45.091 -2.652 -0.194 -0.957 O1 34V 2 34V C2 C2 C 0 1 N N S -11.897 -17.533 -45.053 -0.628 0.165 0.314 C2 34V 3 34V O2 O2 O 0 1 N Y N -10.786 -17.849 -44.195 -1.385 0.703 1.400 O2 34V 4 34V C3 C3 C 0 1 N N S -13.179 -17.362 -44.250 0.641 -0.525 0.850 C3 34V 5 34V O3 O3 O 0 1 N N N -13.507 -16.037 -43.832 0.693 -1.885 0.416 O3 34V 6 34V C4 C4 C 0 1 N N S -14.286 -18.064 -45.004 1.805 0.287 0.230 C4 34V 7 34V O4 O4 O 0 1 N N N -15.361 -17.135 -45.272 2.305 -0.355 -0.944 O4 34V 8 34V C5 C5 C 0 1 N N N -13.575 -18.484 -46.266 1.113 1.628 -0.124 C5 34V 9 34V O5 O5 O 0 1 N N N -12.196 -18.707 -45.882 -0.202 1.223 -0.561 O5 34V 10 34V H11 H1 H 0 1 N N N -12.502 -16.063 -46.493 -1.765 -1.661 0.196 H11 34V 11 34V H12 H2 H 0 1 N N N -10.758 -16.491 -46.543 -0.901 -1.235 -1.301 H12 34V 12 34V HO1 H3 H 0 1 N Y N -11.143 -14.394 -45.660 -3.239 -0.774 -1.461 HO1 34V 13 34V HO2 H4 H 0 1 N Y N -10.987 -18.628 -43.690 -2.195 1.155 1.129 HO2 34V 14 34V H3 H5 H 0 1 N N N -13.029 -17.950 -43.332 0.674 -0.472 1.938 H3 34V 15 34V HO3 H6 H 0 1 N Y N -14.321 -16.051 -43.342 1.473 -2.367 0.725 HO3 34V 16 34V H4 H7 H 0 1 N N N -14.639 -18.943 -44.445 2.602 0.440 0.957 H4 34V 17 34V HO4 H8 H 0 1 N Y N -15.783 -16.895 -44.456 3.036 0.116 -1.369 HO4 34V 18 34V H51 H9 H 0 1 N N N -13.638 -17.690 -47.025 1.045 2.268 0.756 H51 34V 19 34V H52 H10 H 0 1 N N N -14.016 -19.409 -46.665 1.646 2.134 -0.928 H52 34V 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 34V C5 O5 SING N N 1 34V C5 C4 SING N N 2 34V C1 O1 SING N N 3 34V C1 C2 SING N N 4 34V O5 C2 SING N N 5 34V O4 C4 SING N N 6 34V C2 C3 SING N N 7 34V C2 O2 SING N N 8 34V C4 C3 SING N N 9 34V C3 O3 SING N N 10 34V C1 H11 SING N N 11 34V C1 H12 SING N N 12 34V O1 HO1 SING N N 13 34V O2 HO2 SING N N 14 34V C3 H3 SING N N 15 34V O3 HO3 SING N N 16 34V C4 H4 SING N N 17 34V O4 HO4 SING N N 18 34V C5 H51 SING N N 19 34V C5 H52 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 34V SMILES ACDLabs 12.01 "OCC1(O)OCC(O)C1O" 34V InChI InChI 1.03 "InChI=1S/C5H10O5/c6-2-5(9)4(8)3(7)1-10-5/h3-4,6-9H,1-2H2/t3-,4-,5-/m0/s1" 34V InChIKey InChI 1.03 LQXVFWRQNMEDEE-YUPRTTJUSA-N 34V SMILES_CANONICAL CACTVS 3.385 "OC[C@]1(O)OC[C@H](O)[C@@H]1O" 34V SMILES CACTVS 3.385 "OC[C]1(O)OC[CH](O)[CH]1O" 34V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@@H]([C@@](O1)(CO)O)O)O" 34V SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(O1)(CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 34V "SYSTEMATIC NAME" ACDLabs 12.01 beta-L-ribulofuranose 34V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3S,4S)-2-(hydroxymethyl)oxolane-2,3,4-triol" 34V "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LRulfb 34V "COMMON NAME" GMML 1.0 b-L-ribulofuranose 34V "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-L-Rulf # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 34V "CARBOHYDRATE ISOMER" L PDB ? 34V "CARBOHYDRATE RING" furanose PDB ? 34V "CARBOHYDRATE ANOMER" beta PDB ? 34V "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 34V "Create component" 2014-06-17 RCSB 34V "Initial release" 2014-09-03 RCSB 34V "Other modification" 2019-08-12 RCSB 34V "Other modification" 2019-12-19 RCSB 34V "Other modification" 2020-07-03 RCSB 34V "Modify synonyms" 2020-07-17 RCSB 34V "Modify atom id" 2020-07-17 RCSB 34V "Modify component atom id" 2020-07-17 RCSB ##