data_35P
#
_chem_comp.id 35P
_chem_comp.name "(2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H20 N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "OPEN FORM - PENICILLIN V"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-06-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 352.405
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 35P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4QJG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
35P C24 C24 C 0 1 Y N N N N N -36.472 16.387 -38.735 6.413 0.236 -0.821 C24 35P 1
35P C23 C23 C 0 1 Y N N N N N -36.370 15.415 -37.761 7.616 -0.311 -0.415 C23 35P 2
35P C22 C22 C 0 1 Y N N N N N -36.241 15.788 -36.436 7.641 -1.266 0.584 C22 35P 3
35P C21 C21 C 0 1 Y N N N N N -36.161 17.124 -36.093 6.463 -1.678 1.180 C21 35P 4
35P C20 C20 C 0 1 Y N N N N N -36.233 18.092 -37.079 5.258 -1.134 0.778 C20 35P 5
35P C19 C19 C 0 1 Y N N N N N -36.421 17.733 -38.418 5.230 -0.175 -0.224 C19 35P 6
35P O1 O1 O 0 1 N N N N N N -36.513 18.734 -39.386 4.046 0.361 -0.620 O1 35P 7
35P C2 C2 C 0 1 N N N N N N -37.295 18.885 -40.627 2.868 -0.109 0.038 C2 35P 8
35P C3 C3 C 0 1 N N N N N N -36.984 20.343 -40.695 1.661 0.593 -0.529 C3 35P 9
35P O18 O18 O 0 1 N N N N N N -37.813 21.153 -40.408 1.796 1.415 -1.410 O18 35P 10
35P N4 N4 N 0 1 N N N N N N -35.748 20.612 -41.084 0.431 0.307 -0.057 N4 35P 11
35P C5 C5 C 0 1 N N R N N N -35.162 21.768 -41.392 -0.742 0.990 -0.609 C5 35P 12
35P C6 C6 C 0 1 N N N N N N -33.910 21.630 -42.237 -0.934 2.307 0.098 C6 35P 13
35P O17 O17 O 0 1 N N N N N N -33.282 20.739 -42.146 -0.171 2.641 0.972 O17 35P 14
35P C8 C8 C 0 1 N N R N N N -35.337 23.074 -40.752 -1.982 0.117 -0.407 C8 35P 15
35P N7 N7 N 0 1 N N N N N N -33.853 23.212 -40.403 -3.199 0.777 -0.955 N7 35P 16
35P S11 S11 S 0 1 N N N N N N -35.907 23.069 -39.043 -2.425 -0.005 1.376 S11 35P 17
35P C10 C10 C 0 1 N N N N N N -34.372 22.742 -38.150 -4.215 -0.286 1.073 C10 35P 18
35P C12 C12 C 0 1 N N N N N N -34.058 24.000 -37.370 -4.555 -1.773 1.195 C12 35P 19
35P C15 C15 C 0 1 N N N N N N -34.478 21.592 -37.126 -5.062 0.539 2.044 C15 35P 20
35P C9 C9 C 0 1 N N S N N N -33.396 22.398 -39.240 -4.415 0.200 -0.375 C9 35P 21
35P C13 C13 C 0 1 N N N N N N -31.934 22.700 -38.885 -4.851 -0.967 -1.223 C13 35P 22
35P O14 O14 O 0 1 N N N N N N -31.427 23.776 -39.236 -4.069 -1.488 -1.982 O14 35P 23
35P O16 O16 O 0 1 N N N N N N -31.249 21.844 -38.291 -6.109 -1.428 -1.135 O16 35P 24
35P H1 H1 H 0 1 N N N N N N -36.594 16.091 -39.766 6.395 0.985 -1.598 H1 35P 25
35P H2 H2 H 0 1 N N N N N N -36.391 14.370 -38.032 8.537 0.009 -0.880 H2 35P 26
35P H3 H3 H 0 1 N N N N N N -36.203 15.032 -35.666 8.582 -1.693 0.899 H3 35P 27
35P H4 H4 H 0 1 N N N N N N -36.043 17.412 -35.059 6.485 -2.424 1.959 H4 35P 28
35P H5 H5 H 0 1 N N N N N N -36.143 19.135 -36.812 4.338 -1.455 1.244 H5 35P 29
35P H6 H6 H 0 1 N N N N N N -38.366 18.666 -40.505 2.769 -1.184 -0.117 H6 35P 30
35P H7 H7 H 0 1 N N N N N N -36.897 18.307 -41.474 2.941 0.098 1.105 H7 35P 31
35P H8 H8 H 0 1 N N N N N N -35.153 19.812 -41.160 0.323 -0.350 0.647 H8 35P 32
35P H9 H9 H 0 1 N N N N N N -35.821 21.993 -42.244 -0.592 1.167 -1.673 H9 35P 33
35P H10 H10 H 0 1 N N N N N N -33.638 22.413 -42.930 -1.755 2.952 -0.177 H10 35P 34
35P H11 H11 H 0 1 N N N N N N -35.785 23.886 -41.344 -1.839 -0.871 -0.845 H11 35P 35
35P H12 H12 H 0 1 N N N N N N -33.320 22.935 -41.203 -3.167 1.775 -0.808 H12 35P 36
35P H14 H14 H 0 1 N N N N N N -34.830 24.158 -36.602 -4.331 -2.115 2.205 H14 35P 37
35P H15 H15 H 0 1 N N N N N N -33.076 23.896 -36.886 -5.614 -1.922 0.986 H15 35P 38
35P H16 H16 H 0 1 N N N N N N -34.040 24.861 -38.055 -3.960 -2.341 0.479 H16 35P 39
35P H17 H17 H 0 1 N N N N N N -35.196 21.866 -36.339 -4.824 1.597 1.925 H17 35P 40
35P H18 H18 H 0 1 N N N N N N -34.821 20.679 -37.634 -6.119 0.379 1.831 H18 35P 41
35P H19 H19 H 0 1 N N N N N N -33.491 21.411 -36.674 -4.846 0.231 3.067 H19 35P 42
35P H20 H20 H 0 1 N N N N N N -33.488 21.329 -39.484 -5.202 0.954 -0.385 H20 35P 43
35P H21 H21 H 0 1 N N N N N N -30.362 22.166 -38.184 -6.342 -2.178 -1.699 H21 35P 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
35P C6 O17 DOUB N N 1
35P C6 C5 SING N N 2
35P C5 N4 SING N N 3
35P C5 C8 SING N N 4
35P N4 C3 SING N N 5
35P C8 N7 SING N N 6
35P C8 S11 SING N N 7
35P C3 C2 SING N N 8
35P C3 O18 DOUB N N 9
35P C2 O1 SING N N 10
35P N7 C9 SING N N 11
35P O1 C19 SING N N 12
35P C9 C13 SING N N 13
35P C9 C10 SING N N 14
35P O14 C13 DOUB N N 15
35P S11 C10 SING N N 16
35P C13 O16 SING N N 17
35P C24 C19 DOUB Y N 18
35P C24 C23 SING Y N 19
35P C19 C20 SING Y N 20
35P C10 C12 SING N N 21
35P C10 C15 SING N N 22
35P C23 C22 DOUB Y N 23
35P C20 C21 DOUB Y N 24
35P C22 C21 SING Y N 25
35P C24 H1 SING N N 26
35P C23 H2 SING N N 27
35P C22 H3 SING N N 28
35P C21 H4 SING N N 29
35P C20 H5 SING N N 30
35P C2 H6 SING N N 31
35P C2 H7 SING N N 32
35P N4 H8 SING N N 33
35P C5 H9 SING N N 34
35P C6 H10 SING N N 35
35P C8 H11 SING N N 36
35P N7 H12 SING N N 37
35P C12 H14 SING N N 38
35P C12 H15 SING N N 39
35P C12 H16 SING N N 40
35P C15 H17 SING N N 41
35P C15 H18 SING N N 42
35P C15 H19 SING N N 43
35P C9 H20 SING N N 44
35P O16 H21 SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
35P SMILES ACDLabs 12.01 "c1c(cccc1)OCC(=O)NC(C2NC(C(S2)(C)C)C(O)=O)C=O"
35P InChI InChI 1.03 "InChI=1S/C16H20N2O5S/c1-16(2)13(15(21)22)18-14(24-16)11(8-19)17-12(20)9-23-10-6-4-3-5-7-10/h3-8,11,13-14,18H,9H2,1-2H3,(H,17,20)(H,21,22)/t11-,13+,14-/m1/s1"
35P InChIKey InChI 1.03 OQVOJWZOUWGSDX-KWCYVHTRSA-N
35P SMILES_CANONICAL CACTVS 3.385 "CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC(=O)COc2ccccc2)C=O"
35P SMILES CACTVS 3.385 "CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC(=O)COc2ccccc2)C=O"
35P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)COc2ccccc2)C(=O)O)C"
35P SMILES "OpenEye OEToolkits" 1.7.6 "CC1(C(NC(S1)C(C=O)NC(=O)COc2ccccc2)C(=O)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
35P "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid"
35P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4S)-5,5-dimethyl-2-[(1R)-2-oxidanylidene-1-(2-phenoxyethanoylamino)ethyl]-1,3-thiazolidine-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
35P "Create component" 2014-06-19 RCSB
35P "Initial release" 2014-07-08 RCSB
35P "Modify synonyms" 2015-08-04 RCSB
35P "Modify synonyms" 2021-03-01 PDBE
35P "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 35P
_pdbx_chem_comp_synonyms.name "OPEN FORM - PENICILLIN V"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 35P
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C6
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#