data_35Z # _chem_comp.id 35Z _chem_comp.name "2-[2-(3-methoxyphenyl)pyrimidin-4-yl]-1'-prop-2-enoyl-spiro[5,6-dihydro-1~{H}-pyrrolo[3,2-c]pyridine-7,4'-piperidine]-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 443.498 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 35Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OXB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 35Z C1 C1 C 0 1 N N N N N N 52.624 -4.070 -16.352 9.911 -0.482 -0.250 C1 35Z 1 35Z C3 C2 C 0 1 Y N N N N N 53.392 -2.226 -17.700 7.536 -0.444 -0.143 C3 35Z 2 35Z C4 C3 C 0 1 Y N N N N N 52.720 -1.176 -17.074 7.611 0.939 -0.237 C4 35Z 3 35Z C5 C4 C 0 1 Y N N N N N 52.451 -0.009 -17.776 6.458 1.700 -0.233 C5 35Z 4 35Z C6 C5 C 0 1 Y N N N N N 52.846 0.130 -19.097 5.223 1.089 -0.136 C6 35Z 5 35Z C7 C6 C 0 1 Y N N N N N 53.532 -0.912 -19.753 5.139 -0.299 -0.042 C7 35Z 6 35Z C8 C7 C 0 1 Y N N N N N 53.793 -2.095 -19.024 6.302 -1.066 -0.052 C8 35Z 7 35Z N10 N1 N 0 1 Y N N N N N 54.824 -1.626 -21.767 3.755 -2.280 0.151 N10 35Z 8 35Z C11 C8 C 0 1 Y N N N N N 55.214 -1.485 -23.064 2.593 -2.906 0.247 C11 35Z 9 35Z C12 C9 C 0 1 Y N N N N N 54.727 -0.467 -23.808 1.424 -2.167 0.254 C12 35Z 10 35Z C15 C10 C 0 1 Y N N N N N 53.265 1.560 -23.947 0.297 0.061 0.164 C15 35Z 11 35Z C16 C11 C 0 1 Y N N N N N 53.509 1.899 -25.278 0.263 1.423 0.083 C16 35Z 12 35Z C17 C12 C 0 1 Y N N N N N 52.758 3.031 -25.519 -1.086 1.796 0.129 C17 35Z 13 35Z C18 C13 C 0 1 Y N N N N N 52.075 3.336 -24.311 -1.838 0.630 0.228 C18 35Z 14 35Z C21 C14 C 0 1 N N N N N N 50.583 4.827 -25.591 -3.775 2.002 0.912 C21 35Z 15 35Z N22 N2 N 0 1 N N N N N N 51.537 4.723 -26.697 -3.066 3.146 0.351 N22 35Z 16 35Z C23 C15 C 0 1 N N N N N N 52.587 3.866 -26.712 -1.742 3.115 0.076 C23 35Z 17 35Z C30 C16 C 0 1 N N N N N N 50.413 6.557 -20.799 -6.874 -1.254 -0.539 C30 35Z 18 35Z C32 C17 C 0 1 N N N N N N 51.476 7.449 -20.189 -7.444 -2.201 0.432 C32 35Z 19 35Z C33 C18 C 0 1 N N N N N N 51.808 7.084 -18.741 -8.439 -3.006 0.070 C33 35Z 20 35Z O2 O1 O 0 1 N N N N N N 53.675 -3.382 -17.035 8.673 -1.189 -0.147 O2 35Z 21 35Z C9 C19 C 0 1 Y N N N N N 53.950 -0.753 -21.178 3.814 -0.958 0.063 C9 35Z 22 35Z C13 C20 C 0 1 Y N N N N N 53.826 0.431 -23.195 1.516 -0.773 0.160 C13 35Z 23 35Z N14 N3 N 0 1 Y N N N N N 53.474 0.251 -21.907 2.720 -0.211 0.066 N14 35Z 24 35Z N19 N4 N 0 1 Y N N N N N 52.410 2.452 -23.427 -0.998 -0.405 0.256 N19 35Z 25 35Z C20 C21 C 0 1 N N N N N N 51.163 4.531 -24.202 -3.344 0.676 0.284 C20 35Z 26 35Z O24 O2 O 0 1 N N N N N N 53.356 3.796 -27.654 -1.123 4.124 -0.202 O24 35Z 27 35Z C25 C22 C 0 1 N N N N N N 50.039 4.200 -23.193 -3.911 0.571 -1.133 C25 35Z 28 35Z C26 C23 C 0 1 N N N N N N 49.297 5.462 -22.740 -5.440 0.657 -1.074 C26 35Z 29 35Z N27 N5 N 0 1 N N N N N N 50.317 6.340 -22.146 -5.935 -0.370 -0.147 N27 35Z 30 35Z C28 C24 C 0 1 N N N N N N 51.223 6.887 -23.177 -5.389 -0.413 1.216 C28 35Z 31 35Z C29 C25 C 0 1 N N N N N N 52.040 5.709 -23.733 -3.861 -0.486 1.133 C29 35Z 32 35Z O31 O3 O 0 1 N N N N N N 49.607 6.040 -20.050 -7.249 -1.269 -1.696 O31 35Z 33 35Z H1 H1 H 0 1 N N N N N N 53.027 -4.975 -15.874 9.929 0.085 -1.181 H1 35Z 34 35Z H2 H2 H 0 1 N N N N N N 52.193 -3.411 -15.584 10.010 0.201 0.594 H2 35Z 35 35Z H3 H3 H 0 1 N N N N N N 51.843 -4.353 -17.072 10.737 -1.193 -0.242 H3 35Z 36 35Z H4 H4 H 0 1 N N N N N N 52.409 -1.271 -16.044 8.575 1.422 -0.313 H4 35Z 37 35Z H5 H5 H 0 1 N N N N N N 51.928 0.800 -17.287 6.522 2.776 -0.306 H5 35Z 38 35Z H6 H6 H 0 1 N N N N N N 52.626 1.044 -19.628 4.324 1.687 -0.132 H6 35Z 39 35Z H7 H7 H 0 1 N N N N N N 54.313 -2.911 -19.504 6.241 -2.142 0.021 H7 35Z 40 35Z H8 H8 H 0 1 N N N N N N 55.912 -2.186 -23.498 2.558 -3.983 0.318 H8 35Z 41 35Z H9 H9 H 0 1 N N N N N N 55.018 -0.344 -24.841 0.463 -2.654 0.331 H9 35Z 42 35Z H10 H10 H 0 1 N N N N N N 54.152 1.383 -25.975 1.112 2.085 0.001 H10 35Z 43 35Z H11 H11 H 0 1 N N N N N N 50.182 5.851 -25.582 -3.585 1.962 1.985 H11 35Z 44 35Z H12 H12 H 0 1 N N N N N N 49.766 4.115 -25.778 -4.844 2.138 0.749 H12 35Z 45 35Z H13 H13 H 0 1 N N N N N N 51.406 5.320 -27.489 -3.562 3.960 0.169 H13 35Z 46 35Z H14 H14 H 0 1 N N N N N N 51.951 8.259 -20.722 -7.054 -2.242 1.438 H14 35Z 47 35Z H16 H16 H 0 1 N N N N N N 52.552 7.649 -18.199 -8.828 -2.964 -0.936 H16 35Z 48 35Z H17 H17 H 0 1 N N N N N N 51.299 6.261 -18.261 -8.857 -3.701 0.783 H17 35Z 49 35Z H19 H19 H 0 1 N N N N N N 52.076 2.436 -22.484 -1.256 -1.337 0.332 H19 35Z 50 35Z H20 H20 H 0 1 N N N N N N 49.322 3.516 -23.670 -3.524 1.389 -1.741 H20 35Z 51 35Z H21 H21 H 0 1 N N N N N N 50.482 3.711 -22.313 -3.617 -0.381 -1.573 H21 35Z 52 35Z H22 H22 H 0 1 N N N N N N 48.822 5.956 -23.600 -5.737 1.644 -0.720 H22 35Z 53 35Z H23 H23 H 0 1 N N N N N N 48.530 5.207 -21.994 -5.854 0.482 -2.067 H23 35Z 54 35Z H24 H24 H 0 1 N N N N N N 51.895 7.635 -22.730 -5.683 0.487 1.757 H24 35Z 55 35Z H25 H25 H 0 1 N N N N N N 50.639 7.354 -23.983 -5.771 -1.292 1.735 H25 35Z 56 35Z H26 H26 H 0 1 N N N N N N 52.716 5.349 -22.944 -3.566 -1.430 0.675 H26 35Z 57 35Z H27 H27 H 0 1 N N N N N N 52.632 6.067 -24.588 -3.439 -0.421 2.136 H27 35Z 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 35Z O24 C23 DOUB N N 1 35Z C23 N22 SING N N 2 35Z C23 C17 SING N N 3 35Z N22 C21 SING N N 4 35Z C21 C20 SING N N 5 35Z C17 C16 SING Y N 6 35Z C17 C18 DOUB Y N 7 35Z C16 C15 DOUB Y N 8 35Z C18 C20 SING N N 9 35Z C18 N19 SING Y N 10 35Z C20 C29 SING N N 11 35Z C20 C25 SING N N 12 35Z C15 N19 SING Y N 13 35Z C15 C13 SING N N 14 35Z C12 C13 DOUB Y N 15 35Z C12 C11 SING Y N 16 35Z C29 C28 SING N N 17 35Z C13 N14 SING Y N 18 35Z C25 C26 SING N N 19 35Z C28 N27 SING N N 20 35Z C11 N10 DOUB Y N 21 35Z C26 N27 SING N N 22 35Z N27 C30 SING N N 23 35Z N14 C9 DOUB Y N 24 35Z N10 C9 SING Y N 25 35Z C9 C7 SING N N 26 35Z C30 C32 SING N N 27 35Z C30 O31 DOUB N N 28 35Z C32 C33 DOUB N N 29 35Z C7 C6 DOUB Y N 30 35Z C7 C8 SING Y N 31 35Z C6 C5 SING Y N 32 35Z C8 C3 DOUB Y N 33 35Z C5 C4 DOUB Y N 34 35Z C3 C4 SING Y N 35 35Z C3 O2 SING N N 36 35Z O2 C1 SING N N 37 35Z C1 H1 SING N N 38 35Z C1 H2 SING N N 39 35Z C1 H3 SING N N 40 35Z C4 H4 SING N N 41 35Z C5 H5 SING N N 42 35Z C6 H6 SING N N 43 35Z C8 H7 SING N N 44 35Z C11 H8 SING N N 45 35Z C12 H9 SING N N 46 35Z C16 H10 SING N N 47 35Z C21 H11 SING N N 48 35Z C21 H12 SING N N 49 35Z N22 H13 SING N N 50 35Z C32 H14 SING N N 51 35Z C33 H16 SING N N 52 35Z C33 H17 SING N N 53 35Z N19 H19 SING N N 54 35Z C25 H20 SING N N 55 35Z C25 H21 SING N N 56 35Z C26 H22 SING N N 57 35Z C26 H23 SING N N 58 35Z C28 H24 SING N N 59 35Z C28 H25 SING N N 60 35Z C29 H26 SING N N 61 35Z C29 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 35Z InChI InChI 1.03 "InChI=1S/C25H25N5O3/c1-3-21(31)30-11-8-25(9-12-30)15-27-24(32)18-14-20(28-22(18)25)19-7-10-26-23(29-19)16-5-4-6-17(13-16)33-2/h3-7,10,13-14,28H,1,8-9,11-12,15H2,2H3,(H,27,32)" 35Z InChIKey InChI 1.03 XYZWQPFTGADMOX-UHFFFAOYSA-N 35Z SMILES_CANONICAL CACTVS 3.385 "COc1cccc(c1)c2nccc(n2)c3[nH]c4c(c3)C(=O)NCC45CCN(CC5)C(=O)C=C" 35Z SMILES CACTVS 3.385 "COc1cccc(c1)c2nccc(n2)c3[nH]c4c(c3)C(=O)NCC45CCN(CC5)C(=O)C=C" 35Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1)c2nccc(n2)c3cc4c([nH]3)C5(CCN(CC5)C(=O)C=C)CNC4=O" 35Z SMILES "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1)c2nccc(n2)c3cc4c([nH]3)C5(CCN(CC5)C(=O)C=C)CNC4=O" # _pdbx_chem_comp_identifier.comp_id 35Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[2-(3-methoxyphenyl)pyrimidin-4-yl]-1'-prop-2-enoyl-spiro[5,6-dihydro-1~{H}-pyrrolo[3,2-c]pyridine-7,4'-piperidine]-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 35Z "Create component" 2021-06-23 PDBE 35Z "Initial release" 2021-10-20 RCSB 35Z "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 35Z _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C33 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #