data_378
#
_chem_comp.id 378
_chem_comp.name "methyl ~{N}-[(2~{S})-3,3-dimethyl-1-[2-[(4~{R})-5-[[(2~{S})-3-methyl-1-oxidanylidene-1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl-5-oxidanylidene-4-[(4-prop-2-enylphenyl)methyl]pentyl]-2-[(4-thiophen-2-ylphenyl)methyl]hydrazinyl]-1-oxidanylidene-butan-2-yl]carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C42 H57 N5 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-02-10
_chem_comp.pdbx_modified_date 2019-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 759.997
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 378
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CPR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
378 C C1 C 0 1 N N N 7.944 26.682 5.823 -5.807 -3.308 -0.695 C 378 1
378 N N1 N 0 1 N N N 10.167 25.604 5.750 -4.677 -1.583 0.584 N 378 2
378 O O1 O 0 1 N N N 8.312 27.776 5.394 -6.755 -2.560 -0.804 O 378 3
378 CA C2 C 0 1 N N S 8.917 25.721 6.526 -4.737 -3.024 0.327 CA 378 4
378 CB C3 C 0 1 N N N 9.199 26.187 7.967 -5.065 -3.761 1.627 CB 378 5
378 CAA C4 C 0 1 N N N 5.023 27.449 7.300 -7.275 -6.840 -3.383 CAA 378 6
378 CAB C5 C 0 1 N N N 4.564 25.774 0.722 -4.059 8.511 -0.794 CAB 378 7
378 CAC C6 C 0 1 N N N 19.483 17.960 7.256 5.270 0.871 -5.089 CAC 378 8
378 CAF C7 C 0 1 N N N 14.432 17.929 4.015 0.624 3.093 -0.644 CAF 378 9
378 CAG C8 C 0 1 N N N 16.429 18.361 2.579 -0.069 1.149 -2.053 CAG 378 10
378 CAH C9 C 0 1 N N N 14.588 20.053 2.704 1.372 2.944 -3.024 CAH 378 11
378 OAI O2 O 0 1 N N N 18.759 19.355 4.948 4.237 2.145 -3.040 OAI 378 12
378 SAI S1 S 0 1 Y N N 16.160 16.244 10.828 8.534 -1.125 0.118 SAI 378 13
378 OAK O3 O 0 1 N N N 13.940 20.275 5.578 1.860 -0.717 -0.325 OAK 378 14
378 OAL O4 O 0 1 N N N 10.290 23.355 5.985 -2.559 -1.718 1.231 OAL 378 15
378 OAM O5 O 0 1 N N N 12.470 25.716 4.478 -4.722 0.895 1.846 OAM 378 16
378 CAN C10 C 0 1 N N N 5.055 27.867 6.025 -6.373 -5.897 -3.274 CAN 378 17
378 CAO C11 C 0 1 N N N 5.760 25.714 1.321 -3.198 7.632 -0.343 CAO 378 18
378 CAP C12 C 0 1 Y N N 17.289 20.664 8.745 4.637 0.410 1.972 CAP 378 19
378 CAQ C13 C 0 1 Y N N 15.948 21.031 8.765 3.699 -0.428 2.547 CAQ 378 20
378 CAR C14 C 0 1 Y N N 17.697 19.483 9.356 5.792 -0.112 1.429 CAR 378 21
378 CAS C15 C 0 1 N N N 15.542 22.232 8.192 2.438 0.149 3.138 CAS 378 22
378 CAT C16 C 0 1 Y N N 7.966 23.156 2.845 -4.513 4.731 0.212 CAT 378 23
378 CAU C17 C 0 1 Y N N 8.319 25.436 2.168 -2.230 4.722 0.932 CAU 378 24
378 CAV C18 C 0 1 Y N N 9.331 23.003 3.060 -4.445 3.370 -0.019 CAV 378 25
378 CAW C19 C 0 1 Y N N 9.684 25.285 2.392 -2.165 3.359 0.712 CAW 378 26
378 CAY C20 C 0 1 Y N N 17.167 17.534 10.572 7.250 -2.056 0.881 CAY 378 27
378 CAZ C21 C 0 1 Y N N 18.280 17.419 11.315 7.569 -3.365 0.855 CAZ 378 28
378 CBA C22 C 0 1 Y N N 16.772 18.680 10.015 6.014 -1.489 1.461 CBA 378 29
378 CBB C23 C 0 1 N N N 5.661 26.953 4.959 -6.701 -4.621 -2.543 CBB 378 30
378 CBC C24 C 0 1 N N N 13.663 24.077 6.297 -1.002 0.427 1.655 CBC 378 31
378 CBD C25 C 0 1 N N N 6.082 24.494 2.186 -3.479 6.891 0.939 CBD 378 32
378 CBE C26 C 0 1 N N N 15.085 23.528 6.385 0.116 0.653 2.674 CBE 378 33
378 CBF C27 C 0 1 N N N 12.970 23.443 5.092 -2.352 0.750 2.298 CBF 378 34
378 CBG C28 C 0 1 Y N N 17.387 15.323 11.788 9.450 -2.592 -0.200 CBG 378 35
378 CBH C29 C 0 1 N N N 11.544 23.939 3.119 -3.202 1.197 -0.009 CBH 378 36
378 NBJ N2 N 0 1 N N N 6.739 26.158 5.563 -5.714 -4.396 -1.485 NBJ 378 37
378 NBK N3 N 0 1 N N N 16.733 18.645 5.502 2.802 0.563 -2.434 NBK 378 38
378 NBM N4 N 0 1 N N N 15.751 21.469 6.281 1.776 1.008 1.068 NBM 378 39
378 OBN O6 O 0 1 N N N 18.642 17.482 6.200 4.225 0.293 -4.263 OBN 378 40
378 CBO C30 C 0 1 N N N 18.065 18.527 5.538 3.772 1.040 -3.239 CBO 378 41
378 CBQ C31 C 0 1 N N N 15.144 20.529 5.529 1.966 0.480 -0.157 CBQ 378 42
378 CBR C32 C 0 1 N N N 10.681 24.397 5.459 -3.537 -1.026 1.037 CBR 378 43
378 CBS C33 C 0 1 Y N N 7.460 24.359 2.363 -3.405 5.407 0.687 CBS 378 44
378 CBT C34 C 0 1 Y N N 18.475 16.206 11.880 8.780 -3.652 0.260 CBT 378 45
378 CBU C35 C 0 1 Y N N 10.181 24.089 2.898 -3.272 2.684 0.231 CBU 378 46
378 CBV C36 C 0 1 Y N N 15.026 20.243 9.445 3.912 -1.795 2.582 CBV 378 47
378 CBW C37 C 0 1 Y N N 15.432 19.051 10.037 5.064 -2.330 2.043 CBW 378 48
378 CBZ C38 C 0 1 N N S 16.103 19.683 4.672 2.309 1.376 -1.319 CBZ 378 49
378 NCA N5 N 0 1 N N N 15.074 22.169 6.946 1.395 0.206 2.106 NCA 378 50
378 CCB C39 C 0 1 N N N 15.383 19.010 3.495 1.059 2.141 -1.760 CCB 378 51
378 CCC C40 C 0 1 N N R 11.915 24.400 4.538 -3.475 0.456 1.302 CCC 378 52
378 CG1 C41 C 0 1 N N N 9.092 27.715 8.080 -5.047 -5.271 1.376 CG1 378 53
378 CG2 C42 C 0 1 N N N 10.597 25.734 8.401 -4.023 -3.408 2.690 CG2 378 54
378 H1 H1 H 0 1 N N N 10.636 26.430 5.438 -5.459 -1.030 0.429 H1 378 55
378 H2 H2 H 0 1 N N N 8.439 24.732 6.577 -3.774 -3.366 -0.051 H2 378 56
378 H3 H3 H 0 1 N N N 8.455 25.730 8.637 -6.054 -3.463 1.974 H3 378 57
378 H4 H4 H 0 1 N N N 5.422 26.480 7.561 -8.255 -6.704 -2.949 H4 378 58
378 H5 H5 H 0 1 N N N 4.599 28.082 8.065 -7.040 -7.755 -3.907 H5 378 59
378 H6 H6 H 0 1 N N N 3.853 24.972 0.855 -3.858 9.042 -1.712 H6 378 60
378 H7 H7 H 0 1 N N N 4.311 26.624 0.106 -4.970 8.704 -0.247 H7 378 61
378 H8 H8 H 0 1 N N N 19.939 17.106 7.778 5.543 0.167 -5.875 H8 378 62
378 H9 H9 H 0 1 N N N 20.275 18.597 6.834 4.909 1.796 -5.538 H9 378 63
378 H10 H10 H 0 1 N N N 18.882 18.545 7.967 6.144 1.083 -4.472 H10 378 64
378 H11 H11 H 0 1 N N N 13.679 18.388 4.673 0.452 2.526 0.271 H11 378 65
378 H12 H12 H 0 1 N N N 13.929 17.443 3.165 1.407 3.832 -0.472 H12 378 66
378 H13 H13 H 0 1 N N N 15.004 17.179 4.580 -0.296 3.599 -0.937 H13 378 67
378 H14 H14 H 0 1 N N N 17.000 17.612 3.147 0.240 0.471 -2.847 H14 378 68
378 H15 H15 H 0 1 N N N 15.923 17.872 1.733 -0.292 0.577 -1.152 H15 378 69
378 H16 H16 H 0 1 N N N 17.114 19.134 2.200 -0.960 1.694 -2.366 H16 378 70
378 H17 H17 H 0 1 N N N 13.838 20.518 3.360 0.481 3.489 -3.337 H17 378 71
378 H18 H18 H 0 1 N N N 15.273 20.826 2.325 2.175 3.651 -2.815 H18 378 72
378 H19 H19 H 0 1 N N N 14.082 19.564 1.858 1.681 2.266 -3.819 H19 378 73
378 H20 H20 H 0 1 N N N 12.700 26.003 5.354 -4.960 0.466 2.679 H20 378 74
378 H21 H21 H 0 1 N N N 4.659 28.835 5.756 -5.394 -6.034 -3.709 H21 378 75
378 H22 H22 H 0 1 N N N 6.481 26.509 1.196 -2.287 7.439 -0.890 H22 378 76
378 H23 H23 H 0 1 N N N 18.014 21.296 8.255 4.462 1.476 1.944 H23 378 77
378 H24 H24 H 0 1 N N N 18.735 19.189 9.319 6.524 0.544 0.980 H24 378 78
378 H25 H25 H 0 1 N N N 16.408 22.910 8.190 2.101 -0.481 3.961 H25 378 79
378 H26 H26 H 0 1 N N N 14.748 22.653 8.826 2.638 1.155 3.509 H26 378 80
378 H27 H27 H 0 1 N N N 7.295 22.336 3.053 -5.430 5.267 0.016 H27 378 81
378 H28 H28 H 0 1 N N N 7.927 26.388 1.843 -1.364 5.251 1.303 H28 378 82
378 H29 H29 H 0 1 N N N 9.729 22.042 3.352 -5.309 2.842 -0.395 H29 378 83
378 H30 H30 H 0 1 N N N 10.359 26.099 2.172 -1.247 2.824 0.904 H30 378 84
378 H31 H31 H 0 1 N N N 18.971 18.238 11.452 6.928 -4.129 1.269 H31 378 85
378 H32 H32 H 0 1 N N N 6.068 27.563 4.139 -6.681 -3.785 -3.243 H32 378 86
378 H33 H33 H 0 1 N N N 4.884 26.281 4.565 -7.695 -4.701 -2.102 H33 378 87
378 H34 H34 H 0 1 N N N 13.694 25.170 6.174 -0.845 1.076 0.793 H34 378 88
378 H35 H35 H 0 1 N N N 13.112 23.827 7.215 -0.993 -0.614 1.332 H35 378 89
378 H36 H36 H 0 1 N N N 5.602 24.613 3.169 -2.739 7.170 1.689 H36 378 90
378 H37 H37 H 0 1 N N N 5.692 23.591 1.694 -4.475 7.150 1.297 H37 378 91
378 H38 H38 H 0 1 N N N 15.526 23.501 5.378 0.177 1.714 2.917 H38 378 92
378 H39 H39 H 0 1 N N N 15.687 24.183 7.032 -0.097 0.086 3.580 H39 378 93
378 H40 H40 H 0 1 N N N 12.486 22.505 5.401 -2.486 0.136 3.189 H40 378 94
378 H41 H41 H 0 1 N N N 13.716 23.231 4.312 -2.379 1.804 2.576 H41 378 95
378 H42 H42 H 0 1 N N N 17.302 14.326 12.195 10.411 -2.630 -0.693 H42 378 96
378 H44 H44 H 0 1 N N N 11.815 22.880 3.000 -3.949 0.913 -0.750 H44 378 97
378 H45 H45 H 0 1 N N N 12.098 24.544 2.386 -2.209 0.935 -0.374 H45 378 98
378 H46 H46 H 0 1 N N N 6.568 25.198 5.786 -4.992 -5.031 -1.352 H46 378 99
378 H47 H47 H 0 1 N N N 16.163 18.025 6.042 2.430 -0.319 -2.593 H47 378 100
378 H48 H48 H 0 1 N N N 16.746 21.570 6.275 1.911 1.958 1.213 H48 378 101
378 H49 H49 H 0 1 N N N 19.400 15.936 12.367 9.158 -4.660 0.172 H49 378 102
378 H51 H51 H 0 1 N N N 13.995 20.556 9.514 3.176 -2.444 3.033 H51 378 103
378 H52 H52 H 0 1 N N N 14.704 18.412 10.515 5.229 -3.397 2.070 H52 378 104
378 H53 H53 H 0 1 N N N 16.882 20.346 4.268 3.080 2.084 -1.017 H53 378 105
378 H54 H54 H 0 1 N N N 9.297 28.022 9.116 -4.091 -5.554 0.935 H54 378 106
378 H55 H55 H 0 1 N N N 9.824 28.185 7.407 -5.182 -5.798 2.320 H55 378 107
378 H56 H56 H 0 1 N N N 8.078 28.033 7.798 -5.854 -5.535 0.693 H56 378 108
378 H57 H57 H 0 1 N N N 10.789 26.071 9.430 -4.036 -2.333 2.869 H57 378 109
378 H58 H58 H 0 1 N N N 10.657 24.636 8.358 -4.257 -3.934 3.616 H58 378 110
378 H59 H59 H 0 1 N N N 11.349 26.169 7.726 -3.034 -3.707 2.343 H59 378 111
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
378 CAB CAO DOUB N N 1
378 CAO CBD SING N N 2
378 CAU CBS DOUB Y N 3
378 CAU CAW SING Y N 4
378 CBD CBS SING N N 5
378 CBS CAT SING Y N 6
378 CAW CBU DOUB Y N 7
378 CAG CCB SING N N 8
378 CAH CCB SING N N 9
378 CAT CAV DOUB Y N 10
378 CBU CAV SING Y N 11
378 CBU CBH SING N N 12
378 CBH CCC SING N N 13
378 CCB CAF SING N N 14
378 CCB CBZ SING N N 15
378 OAM CCC SING N N 16
378 CCC CBF SING N N 17
378 CCC CBR SING N N 18
378 CBZ NBK SING N N 19
378 CBZ CBQ SING N N 20
378 OAI CBO DOUB N N 21
378 CBB NBJ SING N N 22
378 CBB CAN SING N N 23
378 CBF CBC SING N N 24
378 O C DOUB N N 25
378 CBR N SING N N 26
378 CBR OAL DOUB N N 27
378 NBK CBO SING N N 28
378 CBQ OAK DOUB N N 29
378 CBQ NBM SING N N 30
378 CBO OBN SING N N 31
378 NBJ C SING N N 32
378 N CA SING N N 33
378 C CA SING N N 34
378 CAN CAA DOUB N N 35
378 OBN CAC SING N N 36
378 NBM NCA SING N N 37
378 CBC CBE SING N N 38
378 CBE NCA SING N N 39
378 CA CB SING N N 40
378 NCA CAS SING N N 41
378 CB CG1 SING N N 42
378 CB CG2 SING N N 43
378 CAS CAQ SING N N 44
378 CAP CAQ DOUB Y N 45
378 CAP CAR SING Y N 46
378 CAQ CBV SING Y N 47
378 CAR CBA DOUB Y N 48
378 CBV CBW DOUB Y N 49
378 CBA CBW SING Y N 50
378 CBA CAY SING N N 51
378 CAY SAI SING Y N 52
378 CAY CAZ DOUB Y N 53
378 SAI CBG SING Y N 54
378 CAZ CBT SING Y N 55
378 CBG CBT DOUB Y N 56
378 N H1 SING N N 57
378 CA H2 SING N N 58
378 CB H3 SING N N 59
378 CAA H4 SING N N 60
378 CAA H5 SING N N 61
378 CAB H6 SING N N 62
378 CAB H7 SING N N 63
378 CAC H8 SING N N 64
378 CAC H9 SING N N 65
378 CAC H10 SING N N 66
378 CAF H11 SING N N 67
378 CAF H12 SING N N 68
378 CAF H13 SING N N 69
378 CAG H14 SING N N 70
378 CAG H15 SING N N 71
378 CAG H16 SING N N 72
378 CAH H17 SING N N 73
378 CAH H18 SING N N 74
378 CAH H19 SING N N 75
378 OAM H20 SING N N 76
378 CAN H21 SING N N 77
378 CAO H22 SING N N 78
378 CAP H23 SING N N 79
378 CAR H24 SING N N 80
378 CAS H25 SING N N 81
378 CAS H26 SING N N 82
378 CAT H27 SING N N 83
378 CAU H28 SING N N 84
378 CAV H29 SING N N 85
378 CAW H30 SING N N 86
378 CAZ H31 SING N N 87
378 CBB H32 SING N N 88
378 CBB H33 SING N N 89
378 CBC H34 SING N N 90
378 CBC H35 SING N N 91
378 CBD H36 SING N N 92
378 CBD H37 SING N N 93
378 CBE H38 SING N N 94
378 CBE H39 SING N N 95
378 CBF H40 SING N N 96
378 CBF H41 SING N N 97
378 CBG H42 SING N N 98
378 CBH H44 SING N N 99
378 CBH H45 SING N N 100
378 NBJ H46 SING N N 101
378 NBK H47 SING N N 102
378 NBM H48 SING N N 103
378 CBT H49 SING N N 104
378 CBV H51 SING N N 105
378 CBW H52 SING N N 106
378 CBZ H53 SING N N 107
378 CG1 H54 SING N N 108
378 CG1 H55 SING N N 109
378 CG1 H56 SING N N 110
378 CG2 H57 SING N N 111
378 CG2 H58 SING N N 112
378 CG2 H59 SING N N 113
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
378 InChI InChI 1.03 "InChI=1S/C42H57N5O6S/c1-9-13-30-15-17-31(18-16-30)27-42(52,39(50)44-35(29(3)4)37(48)43-24-10-2)23-12-25-47(46-38(49)36(41(5,6)7)45-40(51)53-8)28-32-19-21-33(22-20-32)34-14-11-26-54-34/h9-11,14-22,26,29,35-36,52H,1-2,12-13,23-25,27-28H2,3-8H3,(H,43,48)(H,44,50)(H,45,51)(H,46,49)/t35-,36+,42+/m0/s1"
378 InChIKey InChI 1.03 IBNVZQRVRDNWIL-FCSANXPSSA-N
378 SMILES_CANONICAL CACTVS 3.385 "COC(=O)N[C@H](C(=O)NN(CCC[C@@](O)(Cc1ccc(CC=C)cc1)C(=O)N[C@@H](C(C)C)C(=O)NCC=C)Cc2ccc(cc2)c3sccc3)C(C)(C)C"
378 SMILES CACTVS 3.385 "COC(=O)N[CH](C(=O)NN(CCC[C](O)(Cc1ccc(CC=C)cc1)C(=O)N[CH](C(C)C)C(=O)NCC=C)Cc2ccc(cc2)c3sccc3)C(C)(C)C"
378 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)NCC=C)NC(=O)[C@@](CCCN(Cc1ccc(cc1)c2cccs2)NC(=O)[C@H](C(C)(C)C)NC(=O)OC)(Cc3ccc(cc3)CC=C)O"
378 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NCC=C)NC(=O)C(CCCN(Cc1ccc(cc1)c2cccs2)NC(=O)C(C(C)(C)C)NC(=O)OC)(Cc3ccc(cc3)CC=C)O"
#
_pdbx_chem_comp_identifier.comp_id 378
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl ~{N}-[(2~{S})-3,3-dimethyl-1-[2-[(4~{R})-5-[[(2~{S})-3-methyl-1-oxidanylidene-1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl-5-oxidanylidene-4-[(4-prop-2-enylphenyl)methyl]pentyl]-2-[(4-thiophen-2-ylphenyl)methyl]hydrazinyl]-1-oxidanylidene-butan-2-yl]carbamate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
378 "Create component" 2014-02-10 EBI
378 "Initial release" 2014-12-17 RCSB
378 "Other modification" 2019-05-10 EBI
##