data_39D # _chem_comp.id 39D _chem_comp.name "4-{2-[(1S)-1-({[trans-4-(aminomethyl)cyclohexyl]carbonyl}amino)-2-phenylethyl]-1H-imidazol-4-yl}benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H31 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-07-11 _chem_comp.pdbx_modified_date 2014-11-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 39D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4TY6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 39D C18 C1 C 0 1 N N N 39.022 -16.439 27.859 5.017 -0.307 1.468 C18 39D 1 39D C17 C2 C 0 1 N N N 38.234 -17.560 28.566 3.818 -0.950 0.768 C17 39D 2 39D C15 C3 C 0 1 N N N 39.169 -18.617 29.136 2.632 -0.025 0.851 C15 39D 3 39D C19 C4 C 0 1 N N N 38.084 -15.334 27.336 6.222 -1.246 1.384 C19 39D 4 39D C20 C5 C 0 1 N N N 37.208 -14.753 28.441 6.566 -1.503 -0.085 C20 39D 5 39D C21 C6 C 0 1 N N N 36.421 -15.883 29.087 5.367 -2.147 -0.785 C21 39D 6 39D C22 C7 C 0 1 N N N 37.343 -16.966 29.663 4.163 -1.207 -0.700 C22 39D 7 39D C23 C8 C 0 1 N N N 36.291 -13.638 27.929 7.771 -2.443 -0.169 C23 39D 8 39D C11 C9 C 0 1 Y N N 41.432 -20.760 28.920 -0.969 -0.288 0.276 C11 39D 9 39D C12 C10 C 0 1 N N S 39.943 -20.914 28.915 0.303 0.515 0.380 C12 39D 10 39D C27 C11 C 0 1 Y N N 47.060 -20.833 30.692 -6.703 -1.678 -0.100 C27 39D 11 39D C1 C12 C 0 1 Y N N 40.246 -23.401 28.592 1.572 2.410 -0.592 C1 39D 12 39D C2 C13 C 0 1 Y N N 40.022 -23.904 29.867 2.780 2.047 -1.156 C2 39D 13 39D C3 C14 C 0 1 Y N N 40.759 -24.977 30.347 3.887 2.861 -1.002 C3 39D 14 39D C4 C15 C 0 1 Y N N 41.731 -25.559 29.559 3.785 4.037 -0.284 C4 39D 15 39D C5 C16 C 0 1 Y N N 41.976 -25.059 28.294 2.576 4.400 0.280 C5 39D 16 39D C6 C17 C 0 1 Y N N 41.235 -23.987 27.814 1.470 3.587 0.126 C6 39D 17 39D N7 N1 N 0 1 Y N N 42.229 -21.020 29.943 -2.173 0.206 0.218 N7 39D 18 39D C8 C18 C 0 1 Y N N 43.509 -20.847 29.451 -3.063 -0.804 0.130 C8 39D 19 39D C9 C19 C 0 1 Y N N 43.450 -20.485 28.135 -2.366 -1.973 0.133 C9 39D 20 39D N10 N2 N 0 1 Y N N 42.129 -20.418 27.814 -1.044 -1.641 0.219 N10 39D 21 39D N13 N3 N 0 1 N N N 39.259 -19.735 28.412 1.456 -0.385 0.300 N13 39D 22 39D C14 C20 C 0 1 N N N 39.527 -22.161 28.115 0.364 1.526 -0.766 C14 39D 23 39D O16 O1 O 0 1 N N N 39.752 -18.466 30.214 2.735 1.044 1.415 O16 39D 24 39D N24 N4 N 0 1 N N N 37.010 -12.468 27.414 8.176 -2.595 -1.573 N24 39D 25 39D C25 C21 C 0 1 Y N N 44.684 -21.056 30.313 -4.536 -0.666 0.045 C25 39D 26 39D C26 C22 C 0 1 Y N N 45.924 -20.530 29.958 -5.340 -1.805 -0.026 C26 39D 27 39D C28 C23 C 0 1 Y N N 46.984 -21.632 31.831 -7.287 -0.408 -0.103 C28 39D 28 39D C29 C24 C 0 1 Y N N 45.734 -22.127 32.207 -6.481 0.731 -0.026 C29 39D 29 39D C30 C25 C 0 1 Y N N 44.605 -21.852 31.453 -5.119 0.602 0.052 C30 39D 30 39D C31 C26 C 0 1 N N N 48.282 -21.958 32.561 -8.755 -0.271 -0.188 C31 39D 31 39D O32 O2 O 0 1 N N N 49.375 -21.559 32.088 -9.455 -1.262 -0.255 O32 39D 32 39D N33 N5 N 0 1 N N N 48.221 -22.669 33.679 -9.318 0.954 -0.191 N33 39D 33 39D H46 H1 H 0 1 N N N 39.574 -16.870 27.011 5.258 0.638 0.981 H46 39D 34 39D H47 H2 H 0 1 N N N 39.733 -15.997 28.573 4.772 -0.124 2.514 H47 39D 35 39D H45 H3 H 0 1 N N N 37.584 -18.041 27.820 3.577 -1.895 1.256 H45 39D 36 39D H49 H4 H 0 1 N N N 38.694 -14.526 26.905 7.076 -0.788 1.882 H49 39D 37 39D H48 H5 H 0 1 N N N 37.435 -15.759 26.556 5.980 -2.191 1.871 H48 39D 38 39D H50 H6 H 0 1 N N N 37.870 -14.320 29.205 6.807 -0.559 -0.572 H50 39D 39 39D H51 H7 H 0 1 N N N 35.807 -15.469 29.901 5.613 -2.330 -1.831 H51 39D 40 39D H52 H8 H 0 1 N N N 35.767 -16.339 28.329 5.126 -3.092 -0.297 H52 39D 41 39D H53 H9 H 0 1 N N N 36.729 -17.766 30.102 3.309 -1.666 -1.199 H53 39D 42 39D H54 H10 H 0 1 N N N 37.979 -16.521 30.443 4.404 -0.262 -1.187 H54 39D 43 39D H55 H11 H 0 1 N N N 35.646 -13.311 28.758 8.598 -2.026 0.405 H55 39D 44 39D H56 H12 H 0 1 N N N 35.668 -14.046 27.119 7.501 -3.417 0.238 H56 39D 45 39D H41 H13 H 0 1 N N N 39.623 -21.077 29.955 0.321 1.044 1.333 H41 39D 46 39D H60 H14 H 0 1 N N N 48.017 -20.444 30.377 -7.325 -2.559 -0.159 H60 39D 47 39D H34 H15 H 0 1 N N N 39.265 -23.454 30.492 2.860 1.128 -1.717 H34 39D 48 39D H35 H16 H 0 1 N N N 40.571 -25.358 31.340 4.832 2.577 -1.442 H35 39D 49 39D H36 H17 H 0 1 N N N 42.297 -26.401 29.929 4.650 4.673 -0.163 H36 39D 50 39D H37 H18 H 0 1 N N N 42.744 -25.502 27.678 2.497 5.320 0.841 H37 39D 51 39D H38 H19 H 0 1 N N N 41.431 -23.605 26.823 0.525 3.871 0.566 H38 39D 52 39D H39 H21 H 0 1 N N N 44.286 -20.291 27.479 -2.779 -2.969 0.075 H39 39D 53 39D H40 H22 H 0 1 N N N 41.746 -20.163 26.926 -0.298 -2.260 0.243 H40 39D 54 39D H42 H23 H 0 1 N N N 38.846 -19.762 27.502 1.374 -1.240 -0.151 H42 39D 55 39D H43 H24 H 0 1 N N N 39.765 -21.998 27.053 0.435 0.995 -1.715 H43 39D 56 39D H44 H25 H 0 1 N N N 38.443 -22.312 28.229 -0.538 2.138 -0.759 H44 39D 57 39D H57 H26 H 0 1 N N N 36.352 -11.784 27.099 8.970 -3.211 -1.656 H57 39D 58 39D H58 H27 H 0 1 N N N 37.574 -12.077 28.141 7.406 -2.920 -2.138 H58 39D 59 39D H59 H29 H 0 1 N N N 46.001 -19.878 29.100 -4.888 -2.786 -0.023 H59 39D 60 39D H61 H30 H 0 1 N N N 45.646 -22.732 33.097 -6.932 1.712 -0.029 H61 39D 61 39D H62 H31 H 0 1 N N N 43.651 -22.260 31.753 -4.495 1.482 0.107 H62 39D 62 39D H64 H32 H 0 1 N N N 49.061 -22.902 34.170 -8.759 1.745 -0.138 H64 39D 63 39D H63 H33 H 0 1 N N N 47.336 -22.972 34.031 -10.282 1.044 -0.247 H63 39D 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 39D C19 C18 SING N N 1 39D C19 C20 SING N N 2 39D N24 C23 SING N N 3 39D N10 C9 SING Y N 4 39D N10 C11 SING Y N 5 39D C6 C5 DOUB Y N 6 39D C6 C1 SING Y N 7 39D C18 C17 SING N N 8 39D C23 C20 SING N N 9 39D C14 C1 SING N N 10 39D C14 C12 SING N N 11 39D C9 C8 DOUB Y N 12 39D C5 C4 SING Y N 13 39D N13 C12 SING N N 14 39D N13 C15 SING N N 15 39D C20 C21 SING N N 16 39D C17 C15 SING N N 17 39D C17 C22 SING N N 18 39D C1 C2 DOUB Y N 19 39D C12 C11 SING N N 20 39D C11 N7 DOUB Y N 21 39D C21 C22 SING N N 22 39D C15 O16 DOUB N N 23 39D C8 N7 SING Y N 24 39D C8 C25 SING N N 25 39D C4 C3 DOUB Y N 26 39D C2 C3 SING Y N 27 39D C26 C25 DOUB Y N 28 39D C26 C27 SING Y N 29 39D C25 C30 SING Y N 30 39D C27 C28 DOUB Y N 31 39D C30 C29 DOUB Y N 32 39D C28 C29 SING Y N 33 39D C28 C31 SING N N 34 39D O32 C31 DOUB N N 35 39D C31 N33 SING N N 36 39D C18 H46 SING N N 37 39D C18 H47 SING N N 38 39D C17 H45 SING N N 39 39D C19 H49 SING N N 40 39D C19 H48 SING N N 41 39D C20 H50 SING N N 42 39D C21 H51 SING N N 43 39D C21 H52 SING N N 44 39D C22 H53 SING N N 45 39D C22 H54 SING N N 46 39D C23 H55 SING N N 47 39D C23 H56 SING N N 48 39D C12 H41 SING N N 49 39D C27 H60 SING N N 50 39D C2 H34 SING N N 51 39D C3 H35 SING N N 52 39D C4 H36 SING N N 53 39D C5 H37 SING N N 54 39D C6 H38 SING N N 55 39D C9 H39 SING N N 56 39D N10 H40 SING N N 57 39D N13 H42 SING N N 58 39D C14 H43 SING N N 59 39D C14 H44 SING N N 60 39D N24 H57 SING N N 61 39D N24 H58 SING N N 62 39D C26 H59 SING N N 63 39D C29 H61 SING N N 64 39D C30 H62 SING N N 65 39D N33 H64 SING N N 66 39D N33 H63 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 39D SMILES ACDLabs 12.01 "O=C(NC(c1nc(cn1)c2ccc(C(=O)N)cc2)Cc3ccccc3)C4CCC(CN)CC4" 39D InChI InChI 1.03 "InChI=1S/C26H31N5O2/c27-15-18-6-8-21(9-7-18)26(33)31-22(14-17-4-2-1-3-5-17)25-29-16-23(30-25)19-10-12-20(13-11-19)24(28)32/h1-5,10-13,16,18,21-22H,6-9,14-15,27H2,(H2,28,32)(H,29,30)(H,31,33)/t18-,21-,22-/m0/s1" 39D InChIKey InChI 1.03 UXCQKLRVLBOFGG-NYVOZVTQSA-N 39D SMILES_CANONICAL CACTVS 3.385 "NC[C@@H]1CC[C@H](CC1)C(=O)N[C@@H](Cc2ccccc2)c3[nH]cc(n3)c4ccc(cc4)C(N)=O" 39D SMILES CACTVS 3.385 "NC[CH]1CC[CH](CC1)C(=O)N[CH](Cc2ccccc2)c3[nH]cc(n3)c4ccc(cc4)C(N)=O" 39D SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)C[C@@H](c2[nH]cc(n2)c3ccc(cc3)C(=O)N)NC(=O)C4CCC(CC4)CN" 39D SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CC(c2[nH]cc(n2)c3ccc(cc3)C(=O)N)NC(=O)C4CCC(CC4)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 39D "SYSTEMATIC NAME" ACDLabs 12.01 "4-{2-[(1S)-1-({[trans-4-(aminomethyl)cyclohexyl]carbonyl}amino)-2-phenylethyl]-1H-imidazol-4-yl}benzamide" 39D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-[2-[(1S)-1-[[4-(aminomethyl)cyclohexyl]carbonylamino]-2-phenyl-ethyl]-1H-imidazol-4-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 39D "Create component" 2014-07-11 RCSB 39D "Modify descriptor" 2014-09-05 RCSB 39D "Initial release" 2014-12-03 RCSB #