data_39S # _chem_comp.id 39S _chem_comp.name "N-[4-({[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-gamma-glutamyl-L-glutamic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type ATOMP _chem_comp.formula "C29 H37 N9 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-07-11 _chem_comp.pdbx_modified_date 2015-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 703.657 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 39S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4QQU _chem_comp.pdbx_subcomponent_list "40Q GGL GGL GLU" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 39S N7 N7 N 0 1 N N N 21.546 -34.604 -24.705 11.048 0.852 1.145 N7 40Q 1 39S C23 C23 C 0 1 N N N 21.375 -35.917 -24.407 11.505 -0.191 0.486 C23 40Q 2 39S N6 N6 N 0 1 N N N 20.399 -36.261 -23.515 12.461 -0.985 1.068 N6 40Q 3 39S N5 N5 N 0 1 N N N 22.125 -36.899 -24.949 11.052 -0.503 -0.759 N5 40Q 4 39S C22 C22 C 0 1 N N N 23.093 -36.651 -25.832 10.112 0.266 -1.352 C22 40Q 5 39S O5 O5 O 0 1 N N N 23.775 -37.613 -26.297 9.699 -0.004 -2.469 O5 40Q 6 39S C21 C21 C 0 1 N N N 23.332 -35.231 -26.197 9.623 1.377 -0.657 C21 40Q 7 39S N8 N8 N 0 1 N N N 24.327 -34.810 -27.088 8.645 2.217 -1.233 N8 40Q 8 39S C18 C18 C 0 1 N N S 23.987 -33.578 -27.817 7.912 3.144 -0.356 C18 40Q 9 39S C19 C19 C 0 1 N N N 23.670 -32.507 -26.801 8.925 3.805 0.591 C19 40Q 10 39S N4 N4 N 0 1 N N N 22.664 -32.951 -25.861 9.640 2.745 1.316 N4 40Q 11 39S C20 C20 C 0 1 N N N 22.488 -34.234 -25.563 10.116 1.650 0.612 C20 40Q 12 39S C17 C17 C 0 1 N N N 22.908 -33.716 -28.894 6.871 2.373 0.458 C17 40Q 13 39S N3 N3 N 0 1 N N N 21.675 -34.383 -28.454 6.000 1.621 -0.450 N3 40Q 14 39S C13 C13 C 0 1 Y N N 20.374 -38.225 -29.476 2.921 -0.721 1.084 C13 40Q 15 39S C26 C26 C 0 1 Y N N 21.631 -37.795 -29.819 3.126 -0.650 -0.298 C26 40Q 16 39S C25 C25 C 0 1 Y N N 22.076 -36.540 -29.468 4.145 0.126 -0.802 C25 40Q 17 39S C16 C16 C 0 1 Y N N 21.275 -35.652 -28.784 4.971 0.839 0.062 C16 40Q 18 39S C15 C15 C 0 1 Y N N 20.005 -36.074 -28.468 4.770 0.770 1.438 C15 40Q 19 39S C14 C14 C 0 1 Y N N 19.560 -37.340 -28.800 3.753 -0.003 1.948 C14 40Q 20 39S C12 C12 C 0 1 N N N 19.955 -39.613 -29.885 1.826 -1.546 1.627 C12 40Q 21 39S O4 O4 O 0 1 N N N 20.787 -40.313 -30.472 1.645 -1.603 2.828 O4 40Q 22 39S N2 N2 N 0 1 N N N 18.711 -40.054 -29.698 1.025 -2.238 0.792 N GGL 23 39S C11 C11 C 0 1 N N S 18.265 -41.257 -30.376 -0.063 -3.057 1.331 CA GGL 24 39S C27 C27 C 0 1 N N N 17.127 -40.856 -31.256 0.471 -4.415 1.710 C GGL 25 39S O7 O7 O 0 1 N N N 17.296 -40.905 -32.465 1.641 -4.671 1.546 O GGL 26 39S C10 C10 C 0 1 N N N 17.863 -42.423 -29.476 -1.155 -3.217 0.272 CB GGL 27 39S C9 C9 C 0 1 N N N 18.290 -42.267 -28.021 -1.784 -1.853 -0.022 CG GGL 28 39S C8 C8 C 0 1 N N N 17.610 -43.307 -27.150 -2.859 -2.010 -1.066 CD GGL 29 39S O3 O3 O 0 1 N N N 17.062 -42.905 -26.130 -3.100 -3.105 -1.529 OE1 GGL 30 39S O6 O6 O 0 1 N N N 15.955 -40.452 -30.719 -0.352 -5.339 2.229 OXT GGL 31 39S N1 N1 N 0 1 N N N 17.645 -44.585 -27.598 -3.554 -0.934 -1.484 N GGL 32 39S C7 C7 C 0 1 N N S 16.877 -45.714 -27.063 -4.600 -1.086 -2.498 CA GGL 33 39S C28 C28 C 0 1 N N N 17.650 -47.037 -26.952 -3.980 -1.039 -3.871 C GGL 34 39S O8 O8 O 0 1 N N N 18.816 -47.212 -27.567 -2.786 -0.893 -3.989 O GGL 35 39S C6 C6 C 0 1 N N N 15.612 -45.813 -27.953 -5.616 0.050 -2.358 CB GGL 36 39S C5 C5 C 0 1 N N N 15.356 -47.181 -28.602 -6.335 -0.072 -1.014 CG GGL 37 39S C4 C4 C 0 1 N N N 14.079 -47.264 -29.416 -7.336 1.046 -0.876 CD GGL 38 39S O2 O2 O 0 1 N N N 13.700 -46.342 -30.086 -7.461 1.861 -1.766 OE1 GGL 39 39S O9 O9 O 0 1 N N N 17.262 -48.022 -26.319 -4.753 -1.159 -4.962 OXT GGL 40 39S N N N 0 1 N N N 13.388 -48.391 -29.327 -8.091 1.141 0.236 N GLU 41 39S C C C 0 1 N N S 12.073 -48.586 -29.922 -9.064 2.229 0.370 CA GLU 42 39S C29 C29 C 0 1 N N N 10.958 -47.797 -29.263 -8.374 3.456 0.908 C GLU 43 39S O11 O11 O 0 1 N N N 9.908 -47.576 -29.866 -7.192 3.425 1.154 O GLU 44 39S C1 C1 C 0 1 N N N 11.708 -50.071 -29.855 -10.174 1.804 1.333 CB GLU 45 39S C2 C2 C 0 1 N N N 12.737 -50.932 -30.575 -10.955 0.636 0.729 CG GLU 46 39S C3 C3 C 0 1 N N N 12.838 -50.455 -31.994 -12.048 0.217 1.677 CD GLU 47 39S O O O 0 1 N N N 11.859 -50.578 -32.725 -12.189 0.795 2.729 OE1 GLU 48 39S O1 O1 O 0 1 N N N 13.986 -49.892 -32.415 -12.866 -0.797 1.354 OE2 GLU 49 39S O10 O10 O 0 1 N N N 11.084 -47.329 -28.018 -9.074 4.583 1.114 OXT GLU 50 39S H1 H1 H 0 1 N N N 19.830 -35.552 -23.098 12.792 -0.773 1.955 H1 40Q 51 39S H2 H2 H 0 1 N N N 20.253 -37.222 -23.279 12.806 -1.757 0.593 H2 40Q 52 39S H4 H4 H 0 1 N N N 24.482 -35.539 -27.755 8.460 2.183 -2.184 H4 40Q 53 39S H6 H6 H 0 1 N N N 24.900 -33.253 -28.337 7.418 3.907 -0.957 H6 40Q 54 39S H7 H7 H 0 1 N N N 24.588 -32.254 -26.250 9.634 4.398 0.013 H7 40Q 55 39S H8 H8 H 0 1 N N N 23.300 -31.614 -27.326 8.401 4.446 1.300 H8 40Q 56 39S H9 H9 H 0 1 N N N 22.867 -32.490 -24.997 9.777 2.811 2.274 H9 40Q 57 39S H10 H10 H 0 1 N N N 23.330 -34.295 -29.728 7.376 1.681 1.132 H10 40Q 58 39S H11 H11 H 0 1 N N N 22.644 -32.707 -29.244 6.272 3.073 1.039 H11 40Q 59 39S H12 H12 H 0 1 N N N 21.717 -34.375 -27.455 6.142 1.670 -1.408 H12 40Q 60 39S H13 H13 H 0 1 N N N 22.283 -38.453 -30.374 2.485 -1.203 -0.968 H13 40Q 61 39S H14 H14 H 0 1 N N N 23.079 -36.244 -29.736 4.304 0.181 -1.868 H14 40Q 62 39S H15 H15 H 0 1 N N N 19.340 -35.401 -27.948 5.413 1.325 2.106 H15 40Q 63 39S H16 H16 H 0 1 N N N 18.560 -37.641 -28.526 3.597 -0.056 3.016 H16 40Q 64 39S H39 H39 H 0 1 N N N 21.949 -37.846 -24.679 11.404 -1.280 -1.222 H17 40Q 65 39S H17 H17 H 0 1 N N N 18.088 -39.558 -29.093 1.169 -2.192 -0.167 H GGL 66 39S H18 H18 H 0 1 N N N 19.081 -41.610 -31.024 -0.480 -2.572 2.213 HA GGL 67 39S H19 H19 H 0 1 N N N 16.768 -42.519 -29.505 -0.719 -3.620 -0.642 HB2 GGL 68 39S H20 H20 H 0 1 N N N 18.323 -43.340 -29.874 -1.922 -3.898 0.640 HB3 GGL 69 39S H21 H21 H 0 1 N N N 19.380 -42.392 -27.949 -2.220 -1.450 0.892 HG2 GGL 70 39S H22 H22 H 0 1 N N N 18.012 -41.263 -27.668 -1.017 -1.171 -0.390 HG3 GGL 71 39S H23 H23 H 0 1 N N N 15.346 -40.234 -31.415 0.037 -6.195 2.456 HXT GGL 72 39S H24 H24 H 0 1 N N N 18.253 -44.777 -28.368 -3.362 -0.058 -1.113 H GGL 73 39S H25 H25 H 0 1 N N N 16.539 -45.448 -26.050 -5.104 -2.043 -2.360 HA GGL 74 39S H26 H26 H 0 1 N N N 15.707 -45.070 -28.759 -5.099 1.008 -2.408 HB2 GGL 75 39S H27 H27 H 0 1 N N N 14.740 -45.567 -27.329 -6.344 -0.013 -3.167 HB3 GGL 76 39S H28 H28 H 0 1 N N N 15.303 -47.935 -27.803 -6.853 -1.031 -0.964 HG2 GGL 77 39S H29 H29 H 0 1 N N N 16.202 -47.409 -29.267 -5.607 -0.010 -0.205 HG3 GGL 78 39S H30 H30 H 0 1 N N N 17.896 -48.724 -26.404 -4.310 -1.122 -5.820 HXT GGL 79 39S H31 H31 H 0 1 N N N 13.793 -49.153 -28.821 -7.991 0.490 0.948 H GLU 80 39S H32 H32 H 0 1 N N N 12.116 -48.296 -30.982 -9.495 2.453 -0.606 HA GLU 81 39S H33 H33 H 0 1 N N N 10.725 -50.219 -30.327 -9.734 1.495 2.282 HB2 GLU 82 39S H34 H34 H 0 1 N N N 11.659 -50.380 -28.800 -10.849 2.643 1.502 HB3 GLU 83 39S H35 H35 H 0 1 N N N 12.419 -51.985 -30.558 -11.395 0.944 -0.220 HG2 GLU 84 39S H36 H36 H 0 1 N N N 13.714 -50.836 -30.080 -10.280 -0.204 0.560 HG3 GLU 85 39S H37 H37 H 0 1 N N N 13.895 -49.628 -33.323 -13.553 -1.029 1.994 HE2 GLU 86 39S H38 H38 H 0 1 N N N 10.292 -46.866 -27.771 -8.588 5.344 1.460 HXT GLU 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 39S O C3 DOUB N N 1 39S O7 C27 DOUB N N 2 39S O1 C3 SING N N 3 39S C3 C2 SING N N 4 39S C27 O6 SING N N 5 39S C27 C11 SING N N 6 39S C2 C1 SING N N 7 39S O4 C12 DOUB N N 8 39S C11 N2 SING N N 9 39S C11 C10 SING N N 10 39S O2 C4 DOUB N N 11 39S C C1 SING N N 12 39S C N SING N N 13 39S C C29 SING N N 14 39S C12 N2 SING N N 15 39S C12 C13 SING N N 16 39S O11 C29 DOUB N N 17 39S C26 C13 DOUB Y N 18 39S C26 C25 SING Y N 19 39S C13 C14 SING Y N 20 39S C10 C9 SING N N 21 39S C25 C16 DOUB Y N 22 39S C4 N SING N N 23 39S C4 C5 SING N N 24 39S C29 O10 SING N N 25 39S C17 N3 SING N N 26 39S C17 C18 SING N N 27 39S C14 C15 DOUB Y N 28 39S C16 C15 SING Y N 29 39S C16 N3 SING N N 30 39S C5 C6 SING N N 31 39S C9 C8 SING N N 32 39S C6 C7 SING N N 33 39S C18 N8 SING N N 34 39S C18 C19 SING N N 35 39S N1 C8 SING N N 36 39S N1 C7 SING N N 37 39S O8 C28 DOUB N N 38 39S C8 O3 DOUB N N 39 39S N8 C21 SING N N 40 39S C7 C28 SING N N 41 39S C28 O9 SING N N 42 39S C19 N4 SING N N 43 39S O5 C22 DOUB N N 44 39S C21 C22 SING N N 45 39S C21 C20 DOUB N N 46 39S N4 C20 SING N N 47 39S C22 N5 SING N N 48 39S C20 N7 SING N N 49 39S N5 C23 SING N N 50 39S N7 C23 DOUB N N 51 39S C23 N6 SING N N 52 39S N6 H1 SING N N 53 39S N6 H2 SING N N 54 39S N8 H4 SING N N 55 39S C18 H6 SING N N 56 39S C19 H7 SING N N 57 39S C19 H8 SING N N 58 39S N4 H9 SING N N 59 39S C17 H10 SING N N 60 39S C17 H11 SING N N 61 39S N3 H12 SING N N 62 39S C26 H13 SING N N 63 39S C25 H14 SING N N 64 39S C15 H15 SING N N 65 39S C14 H16 SING N N 66 39S N2 H17 SING N N 67 39S C11 H18 SING N N 68 39S C10 H19 SING N N 69 39S C10 H20 SING N N 70 39S C9 H21 SING N N 71 39S C9 H22 SING N N 72 39S O6 H23 SING N N 73 39S N1 H24 SING N N 74 39S C7 H25 SING N N 75 39S C6 H26 SING N N 76 39S C6 H27 SING N N 77 39S C5 H28 SING N N 78 39S C5 H29 SING N N 79 39S O9 H30 SING N N 80 39S N H31 SING N N 81 39S C H32 SING N N 82 39S C1 H33 SING N N 83 39S C1 H34 SING N N 84 39S C2 H35 SING N N 85 39S C2 H36 SING N N 86 39S O1 H37 SING N N 87 39S O10 H38 SING N N 88 39S N5 H39 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 39S SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)CCC(C(=O)O)NC(=O)CCC(C(=O)O)NC(=O)c1ccc(cc1)NCC3NC2=C(N=C(N)NC2=O)NC3)CCC(=O)O" 39S InChI InChI 1.03 ;InChI=1S/C29H37N9O12/c30-29-37-23-22(25(44)38-29)33-15(12-32-23)11-31-14-3-1-13(2-4-14)24(43)36-18(28(49)50)6-9-20(40)34-16(26(45)46)5-8-19(39)35-17(27(47)48)7-10-21(41)42/h1-4,15-18,31,33H,5-12H2,(H,34,40)(H,35,39)(H,36,43)(H,41,42)(H,45,46)(H,47,48)(H,49,50)(H4,30,32,37,38,44)/t15-,16-,17-,18-/m0/s1 ; 39S InChIKey InChI 1.03 RXWVHRYZTWZATH-XSLAGTTESA-N 39S SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N[C@@H](CNc3ccc(cc3)C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)CN2)C(=O)N1" 39S SMILES CACTVS 3.385 "NC1=NC2=C(N[CH](CNc3ccc(cc3)C(=O)N[CH](CCC(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)CN2)C(=O)N1" 39S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)O)C(=O)O)C(=O)O)C(=O)O)NC[C@H]2CNC3=C(N2)C(=O)NC(=N3)N" 39S SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)NC(CCC(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)C(=O)O)NCC2CNC3=C(N2)C(=O)NC(=N3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 39S "SYSTEMATIC NAME" ACDLabs 12.01 "N-[4-({[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-gamma-glutamyl-L-glutamic acid" 39S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[(4S)-4-[[(4S)-4-[[4-[[(6S)-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-3H-pteridin-6-yl]methylamino]phenyl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 39S "Create component" 2014-07-11 RCSB 39S "Other modification" 2014-07-11 RCSB 39S "Other modification" 2014-09-10 RCSB 39S "Other modification" 2015-01-06 RCSB 39S "Modify subcomponent list" 2015-01-06 RCSB 39S "Initial release" 2015-01-14 RCSB #