data_3AM # _chem_comp.id 3AM _chem_comp.name "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3'-AMP" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-01-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3AM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3C0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3AM O1P O1P O 0 1 N N N 19.794 -18.310 -22.148 -4.939 0.097 -0.475 O1P 3AM 1 3AM P P P 0 1 N N N 19.578 -18.863 -20.760 -3.993 1.169 -0.091 P 3AM 2 3AM O2P O2P O 0 1 N N N 18.969 -20.244 -20.861 -3.684 2.096 -1.371 O2P 3AM 3 3AM O3P O3P O 0 1 N N N 18.644 -17.926 -20.027 -4.644 2.067 1.077 O3P 3AM 4 3AM "O2'" O2* O 0 1 N N N 23.543 -18.737 -19.240 -0.398 1.544 -0.429 "O2'" 3AM 5 3AM "C2'" C2* C 0 1 N N R 22.628 -19.183 -18.257 -0.436 0.125 -0.589 "C2'" 3AM 6 3AM "C3'" C3* C 0 1 N N S 21.317 -19.673 -18.860 -1.860 -0.423 -0.328 "C3'" 3AM 7 3AM "O3'" O3* O 0 1 N N N 21.021 -18.916 -20.026 -2.623 0.512 0.439 "O3'" 3AM 8 3AM "C1'" C1* C 0 1 N N R 22.152 -18.054 -17.344 0.390 -0.578 0.518 "C1'" 3AM 9 3AM "O4'" O4* O 0 1 N N N 20.834 -18.397 -16.935 -0.205 -1.891 0.600 "O4'" 3AM 10 3AM "C4'" C4* C 0 1 N N R 20.276 -19.377 -17.784 -1.627 -1.716 0.476 "C4'" 3AM 11 3AM "C5'" C5* C 0 1 N N N 19.835 -20.597 -16.973 -2.234 -2.908 -0.267 "C5'" 3AM 12 3AM "O5'" O5* O 0 1 N N N 20.903 -21.135 -16.221 -2.116 -4.082 0.538 "O5'" 3AM 13 3AM N9 N9 N 0 1 Y N N 22.948 -17.814 -16.124 1.799 -0.674 0.129 N9 3AM 14 3AM C8 C8 C 0 1 Y N N 23.580 -16.633 -15.833 2.399 -1.740 -0.473 C8 3AM 15 3AM N7 N7 N 0 1 Y N N 24.185 -16.760 -14.632 3.659 -1.484 -0.676 N7 3AM 16 3AM C5 C5 C 0 1 Y N N 23.941 -17.994 -14.138 3.947 -0.242 -0.219 C5 3AM 17 3AM C6 C6 C 0 1 Y N N 24.323 -18.624 -12.954 5.107 0.548 -0.169 C6 3AM 18 3AM N6 N6 N 0 1 N N N 25.077 -17.981 -12.063 6.308 0.075 -0.669 N6 3AM 19 3AM C4 C4 C 0 1 Y N N 23.155 -18.676 -15.065 2.755 0.295 0.298 C4 3AM 20 3AM N3 N3 N 0 1 Y N N 22.761 -19.957 -14.813 2.768 1.522 0.809 N3 3AM 21 3AM C2 C2 C 0 1 Y N N 23.134 -20.590 -13.642 3.879 2.228 0.829 C2 3AM 22 3AM N1 N1 N 0 1 Y N N 23.914 -19.924 -12.713 5.025 1.761 0.367 N1 3AM 23 3AM HO2P HO2P H 0 0 N N N 18.841 -20.468 -21.775 -3.070 2.821 -1.192 HO2P 3AM 24 3AM HO3P HO3P H 0 0 N N N 18.448 -18.281 -19.168 -5.475 2.495 0.827 HO3P 3AM 25 3AM "HO2'" HO2* H 0 0 N N N 23.093 -18.637 -20.070 0.474 1.934 -0.582 "HO2'" 3AM 26 3AM "H2'" H2* H 0 1 N N N 23.190 -19.967 -17.729 -0.084 -0.163 -1.579 "H2'" 3AM 27 3AM "H3'" H3* H 0 1 N N N 21.348 -20.735 -19.144 -2.363 -0.642 -1.270 "H3'" 3AM 28 3AM "H1'" H1* H 0 1 N N N 22.238 -17.127 -17.930 0.288 -0.051 1.467 "H1'" 3AM 29 3AM "H4'" H4* H 0 1 N N N 19.357 -19.031 -18.280 -2.076 -1.625 1.465 "H4'" 3AM 30 3AM "H5'" H5* H 0 1 N N N 19.034 -20.293 -16.283 -3.287 -2.711 -0.470 "H5'" 3AM 31 3AM "H5'A" H5*A H 0 0 N N N 19.483 -21.368 -17.674 -1.705 -3.057 -1.208 "H5'A" 3AM 32 3AM "HO5'" HO5* H 0 0 N N N 21.658 -21.256 -16.784 -2.482 -4.878 0.129 "HO5'" 3AM 33 3AM H8 H8 H 0 1 N N N 23.592 -15.752 -16.457 1.902 -2.660 -0.742 H8 3AM 34 3AM HN6 HN6 H 0 1 N N N 25.985 -17.820 -12.449 6.355 -0.812 -1.058 HN6 3AM 35 3AM HN6A HN6A H 0 0 N N N 24.651 -17.105 -11.836 7.102 0.630 -0.629 HN6A 3AM 36 3AM H2 H2 H 0 1 N N N 22.817 -21.605 -13.452 3.855 3.222 1.251 H2 3AM 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3AM O1P P DOUB N N 1 3AM P O2P SING N N 2 3AM P O3P SING N N 3 3AM P "O3'" SING N N 4 3AM "O2'" "C2'" SING N N 5 3AM "C2'" "C3'" SING N N 6 3AM "C2'" "C1'" SING N N 7 3AM "C3'" "O3'" SING N N 8 3AM "C3'" "C4'" SING N N 9 3AM "C1'" "O4'" SING N N 10 3AM "C1'" N9 SING N N 11 3AM "O4'" "C4'" SING N N 12 3AM "C4'" "C5'" SING N N 13 3AM "C5'" "O5'" SING N N 14 3AM N9 C8 SING Y N 15 3AM N9 C4 SING Y N 16 3AM C8 N7 DOUB Y N 17 3AM N7 C5 SING Y N 18 3AM C5 C6 DOUB Y N 19 3AM C5 C4 SING Y N 20 3AM C6 N6 SING N N 21 3AM C6 N1 SING Y N 22 3AM C4 N3 DOUB Y N 23 3AM N3 C2 SING Y N 24 3AM C2 N1 DOUB Y N 25 3AM O2P HO2P SING N N 26 3AM O3P HO3P SING N N 27 3AM "O2'" "HO2'" SING N N 28 3AM "C2'" "H2'" SING N N 29 3AM "C3'" "H3'" SING N N 30 3AM "C1'" "H1'" SING N N 31 3AM "C4'" "H4'" SING N N 32 3AM "C5'" "H5'" SING N N 33 3AM "C5'" "H5'A" SING N N 34 3AM "O5'" "HO5'" SING N N 35 3AM C8 H8 SING N N 36 3AM N6 HN6 SING N N 37 3AM N6 HN6A SING N N 38 3AM C2 H2 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3AM SMILES ACDLabs 10.04 "O=P(O)(O)OC3C(OC(n2cnc1c(ncnc12)N)C3O)CO" 3AM SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O[P](O)(O)=O)[C@H]3O" 3AM SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O[P](O)(O)=O)[CH]3O" 3AM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)OP(=O)(O)O)O)N" 3AM SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)OP(=O)(O)O)O)N" 3AM InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(17)7(4(1-16)21-10)22-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" 3AM InChIKey InChI 1.03 LNQVTSROQXJCDD-KQYNXXCUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3AM "SYSTEMATIC NAME" ACDLabs 10.04 "3'-adenylic acid" 3AM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3AM "Create component" 2008-01-23 PDBJ 3AM "Modify aromatic_flag" 2011-06-04 RCSB 3AM "Modify descriptor" 2011-06-04 RCSB 3AM "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3AM _pdbx_chem_comp_synonyms.name "3'-AMP" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##