data_3AT # _chem_comp.id 3AT _chem_comp.name "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "CORDYCEPIN TRIPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-06-21 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3AT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1F5A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3AT PG PG P 0 1 N N N 31.233 39.835 -18.520 5.709 -2.330 -0.574 PG 3AT 1 3AT O1G O1G O 0 1 N N N 32.622 39.418 -18.354 5.547 -2.923 0.772 O1G 3AT 2 3AT O2G O2G O 0 1 N N N 30.488 39.130 -19.551 7.248 -1.914 -0.796 O2G 3AT 3 3AT O3G O3G O 0 1 N N N 30.535 39.878 -17.195 5.278 -3.407 -1.690 O3G 3AT 4 3AT PB PB P 0 1 N N R 30.786 41.838 -20.580 4.481 0.236 0.257 PB 3AT 5 3AT O1B O1B O 0 1 N N N 31.703 41.409 -21.688 4.382 -0.224 1.661 O1B 3AT 6 3AT O2B O2B O 0 1 N N N 29.854 42.941 -20.506 5.678 1.304 0.126 O2B 3AT 7 3AT O3B O3B O 0 1 N N N 31.290 41.332 -19.107 4.777 -1.024 -0.701 O3B 3AT 8 3AT PA PA P 0 1 N N S 33.278 43.323 -19.550 2.105 1.989 0.519 PA 3AT 9 3AT O1A O1A O 0 1 N N N 32.829 43.775 -18.234 1.991 1.681 1.962 O1A 3AT 10 3AT O2A O2A O 0 1 N N N 34.346 42.279 -19.614 2.693 3.476 0.333 O2A 3AT 11 3AT O3A O3A O 0 1 N N N 31.964 42.907 -20.433 3.094 0.928 -0.179 O3A 3AT 12 3AT "O5'" O5* O 0 1 N N N 33.683 44.588 -20.394 0.650 1.897 -0.165 "O5'" 3AT 13 3AT "C5'" C5* C 0 1 N N N 32.769 45.678 -20.680 -0.478 2.639 0.303 "C5'" 3AT 14 3AT "C4'" C4* C 0 1 N N S 32.782 46.065 -22.150 -1.695 2.320 -0.568 "C4'" 3AT 15 3AT "O4'" O4* O 0 1 N N N 34.162 46.266 -22.543 -2.097 0.944 -0.395 "O4'" 3AT 16 3AT "C3'" C3* C 0 1 N N N 32.189 45.028 -23.101 -2.933 3.121 -0.091 "C3'" 3AT 17 3AT "C2'" C2* C 0 1 N N R 33.411 44.504 -23.791 -4.103 2.245 -0.602 "C2'" 3AT 18 3AT "O2'" O2* O 0 1 N N N 33.174 44.082 -25.121 -4.604 2.753 -1.840 "O2'" 3AT 19 3AT "C1'" C1* C 0 1 N N R 34.419 45.650 -23.791 -3.472 0.854 -0.805 "C1'" 3AT 20 3AT N9 N9 N 0 1 Y N N 35.826 45.171 -23.812 -4.173 -0.136 0.016 N9 3AT 21 3AT C8 C8 C 0 1 Y N N 36.500 44.385 -22.897 -3.816 -0.546 1.266 C8 3AT 22 3AT N7 N7 N 0 1 Y N N 37.738 44.126 -23.199 -4.661 -1.435 1.701 N7 3AT 23 3AT C5 C5 C 0 1 Y N N 37.900 44.788 -24.401 -5.611 -1.651 0.760 C5 3AT 24 3AT C6 C6 C 0 1 Y N N 39.007 44.922 -25.293 -6.746 -2.476 0.673 C6 3AT 25 3AT N6 N6 N 0 1 N N N 40.172 44.348 -25.039 -7.093 -3.315 1.718 N6 3AT 26 3AT N1 N1 N 0 1 Y N N 38.849 45.658 -26.422 -7.478 -2.432 -0.435 N1 3AT 27 3AT C2 C2 C 0 1 Y N N 37.664 46.235 -26.674 -7.154 -1.634 -1.436 C2 3AT 28 3AT N3 N3 N 0 1 Y N N 36.541 46.189 -25.928 -6.102 -0.845 -1.400 N3 3AT 29 3AT C4 C4 C 0 1 Y N N 36.737 45.434 -24.785 -5.313 -0.816 -0.329 C4 3AT 30 3AT HOG2 2HOG H 0 0 N N N 29.584 39.401 -19.659 7.428 -1.518 -1.660 HOG2 3AT 31 3AT HOG3 3HOG H 0 0 N N N 29.631 40.149 -17.303 5.798 -4.222 -1.673 HOG3 3AT 32 3AT HOB2 2HOB H 0 0 N N N 29.273 43.212 -19.804 5.801 1.649 -0.769 HOB2 3AT 33 3AT HOA2 2HOA H 0 0 N N N 34.637 41.985 -20.469 2.795 3.746 -0.590 HOA2 3AT 34 3AT "H5'1" 1H5* H 0 0 N N N 31.736 45.440 -20.334 -0.689 2.365 1.337 "H5'1" 3AT 35 3AT "H5'2" 2H5* H 0 0 N N N 32.974 46.559 -20.028 -0.261 3.705 0.247 "H5'2" 3AT 36 3AT "H4'" H4* H 0 1 N N N 32.145 46.976 -22.233 -1.480 2.528 -1.616 "H4'" 3AT 37 3AT "H3'1" 1H3* H 0 0 N N N 31.551 44.252 -22.616 -2.951 3.199 0.996 "H3'1" 3AT 38 3AT "H3'2" 2H3* H 0 0 N N N 31.391 45.410 -23.779 -2.957 4.109 -0.551 "H3'2" 3AT 39 3AT "H2'1" 1H2* H 0 0 N N N 33.775 43.599 -23.250 -4.899 2.201 0.142 "H2'1" 3AT 40 3AT "HO2'" HO2* H 0 0 N N N 33.949 43.749 -25.558 -4.961 3.650 -1.781 "HO2'" 3AT 41 3AT "H1'" H1* H 0 1 N N N 34.311 46.307 -24.685 -3.527 0.572 -1.857 "H1'" 3AT 42 3AT H8 H8 H 0 1 N N N 36.068 43.981 -21.965 -2.958 -0.186 1.814 H8 3AT 43 3AT HN61 1HN6 H 0 0 N N N 40.962 44.443 -25.676 -6.551 -3.339 2.522 HN61 3AT 44 3AT HN62 2HN6 H 0 0 N N N 40.006 43.352 -24.891 -7.878 -3.880 1.646 HN62 3AT 45 3AT H2 H2 H 0 1 N N N 37.606 46.818 -27.608 -7.777 -1.629 -2.319 H2 3AT 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3AT PG O1G DOUB N N 1 3AT PG O2G SING N N 2 3AT PG O3G SING N N 3 3AT PG O3B SING N N 4 3AT O2G HOG2 SING N N 5 3AT O3G HOG3 SING N N 6 3AT PB O1B DOUB N N 7 3AT PB O2B SING N N 8 3AT PB O3B SING N N 9 3AT PB O3A SING N N 10 3AT O2B HOB2 SING N N 11 3AT PA O1A DOUB N N 12 3AT PA O2A SING N N 13 3AT PA O3A SING N N 14 3AT PA "O5'" SING N N 15 3AT O2A HOA2 SING N N 16 3AT "O5'" "C5'" SING N N 17 3AT "C5'" "C4'" SING N N 18 3AT "C5'" "H5'1" SING N N 19 3AT "C5'" "H5'2" SING N N 20 3AT "C4'" "O4'" SING N N 21 3AT "C4'" "C3'" SING N N 22 3AT "C4'" "H4'" SING N N 23 3AT "O4'" "C1'" SING N N 24 3AT "C3'" "C2'" SING N N 25 3AT "C3'" "H3'1" SING N N 26 3AT "C3'" "H3'2" SING N N 27 3AT "C2'" "O2'" SING N N 28 3AT "C2'" "C1'" SING N N 29 3AT "C2'" "H2'1" SING N N 30 3AT "O2'" "HO2'" SING N N 31 3AT "C1'" N9 SING N N 32 3AT "C1'" "H1'" SING N N 33 3AT N9 C8 SING Y N 34 3AT N9 C4 SING Y N 35 3AT C8 N7 DOUB Y N 36 3AT C8 H8 SING N N 37 3AT N7 C5 SING Y N 38 3AT C5 C6 SING Y N 39 3AT C5 C4 DOUB Y N 40 3AT C6 N6 SING N N 41 3AT C6 N1 DOUB Y N 42 3AT N6 HN61 SING N N 43 3AT N6 HN62 SING N N 44 3AT N1 C2 SING Y N 45 3AT C2 N3 DOUB Y N 46 3AT C2 H2 SING N N 47 3AT N3 C4 SING Y N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3AT SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3" 3AT InChI InChI 1.03 "InChI=1S/C10H16N5O12P3/c11-8-7-9(13-3-12-8)15(4-14-7)10-6(16)1-5(25-10)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-6,10,16H,1-2H2,(H,20,21)(H,22,23)(H2,11,12,13)(H2,17,18,19)/t5-,6+,10+/m0/s1" 3AT InChIKey InChI 1.03 NLIHPCYXRYQPSD-BAJZRUMYSA-N 3AT SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C[C@H]3O" 3AT SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C[CH]3O" 3AT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H](C[C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)N" 3AT SMILES "OpenEye OEToolkits" 1.7.5 "c1nc(c2c(n1)n(cn2)C3C(CC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3AT "SYSTEMATIC NAME" ACDLabs 10.04 "3'-deoxyadenosine 5'-(tetrahydrogen triphosphate)" 3AT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3AT "Create component" 2000-06-21 RCSB 3AT "Modify descriptor" 2011-06-04 RCSB 3AT "Modify descriptor" 2012-01-05 RCSB 3AT "Modify coordinates" 2012-01-05 RCSB 3AT "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3AT _pdbx_chem_comp_synonyms.name "CORDYCEPIN TRIPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##