data_3CB
#
_chem_comp.id 3CB
_chem_comp.name "N-[(3-CARBOXYBENZYL)SULFONYL]ISOLEUCYL-N~1~-{4-[AMINO(IMINO)METHYL]BENZYL}-5-IMINOORNITHINAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H37 N7 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "3-({1-[3-CARBAMIMIDOYL-1-(4-CARBAMIMIDOYL-BENZYLCARBAMOYL)-PROPYLCARBAMOYL]-2-METHYL-BUTYLSULFAMOYL}-METHYL)-BENZOIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-11-24
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 587.691
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3CB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1WSS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3CB C15 C15 C 0 1 N N N 35.635 6.944 9.853 -1.091 -0.590 0.344 C15 3CB 1
3CB O1 O1 O 0 1 N N N 34.895 7.356 10.750 -1.193 -1.763 0.053 O1 3CB 2
3CB N17 N17 N 0 1 N N N 35.460 7.215 8.526 -0.856 0.324 -0.616 N17 3CB 3
3CB C18 C18 C 0 1 N N S 34.377 8.162 8.257 -0.774 -0.091 -2.019 C18 3CB 4
3CB C19 C19 C 0 1 N N N 34.342 8.707 6.833 -2.069 0.288 -2.740 C19 3CB 5
3CB C20 C20 C 0 1 N N N 35.717 9.126 6.334 -3.241 -0.477 -2.121 C20 3CB 6
3CB C28 C28 C 0 1 N N N 33.067 7.466 8.622 0.389 0.599 -2.680 C28 3CB 7
3CB O30 O30 O 0 1 N N N 32.915 6.261 8.411 1.082 1.364 -2.043 O30 3CB 8
3CB N31 N31 N 0 1 N N N 32.153 8.283 9.174 0.660 0.368 -3.980 N31 3CB 9
3CB C32 C32 C 0 1 N N N 30.785 7.812 9.368 1.792 1.040 -4.623 C32 3CB 10
3CB C16 C16 C 0 1 Y N N 31.223 6.530 11.454 1.198 1.327 -7.036 C16 3CB 11
3CB C17 C17 C 0 1 Y N N 31.071 6.304 12.819 1.271 0.941 -8.359 C17 3CB 12
3CB C22 C22 C 0 1 Y N N 30.168 7.062 13.595 2.032 -0.172 -8.716 C22 3CB 13
3CB C23 C23 C 0 1 Y N N 29.376 8.041 12.944 2.713 -0.888 -7.733 C23 3CB 14
3CB C24 C24 C 0 1 Y N N 29.548 8.290 11.561 2.637 -0.488 -6.414 C24 3CB 15
3CB C25 C25 C 0 1 Y N N 30.488 7.540 10.815 1.876 0.613 -6.065 C25 3CB 16
3CB C26 C26 C 0 1 N N N 30.088 6.815 15.072 2.114 -0.592 -10.134 C26 3CB 17
3CB N1 N1 N 0 1 N N N 30.737 5.789 15.648 1.476 0.078 -11.050 N1 3CB 18
3CB C2 C2 C 0 1 N N N 35.702 9.653 4.935 -4.524 -0.057 -2.790 C2 3CB 19
3CB N5 N5 N 0 1 N N N 35.598 8.857 3.874 -5.714 -0.613 -2.398 N5 3CB 20
3CB N3 N3 N 0 1 N N N 35.849 10.969 4.787 -4.503 0.826 -3.733 N3 3CB 21
3CB C1 C1 C 0 1 N N R 37.954 7.046 10.765 -2.680 0.227 2.063 C1 3CB 22
3CB C4 C4 C 0 1 N N N 39.181 6.304 11.291 -3.052 1.458 1.234 C4 3CB 23
3CB N4 N4 N 0 1 N N N 36.542 5.092 11.267 -0.832 -1.257 2.663 N4 3CB 24
3CB C5 C5 C 0 1 N N R 36.859 6.072 10.212 -1.226 -0.156 1.781 C5 3CB 25
3CB C3 C3 C 0 1 N N N 38.346 8.188 9.796 -3.598 -0.937 1.686 C3 3CB 26
3CB S1 S1 S 0 1 N N N 35.683 3.638 10.875 0.353 -1.027 3.796 S1 3CB 27
3CB O4 O4 O 0 1 N N N 35.840 2.804 12.008 0.453 -2.304 4.411 O4 3CB 28
3CB O3 O3 O 0 1 N N N 36.238 3.246 9.632 1.414 -0.472 3.032 O3 3CB 29
3CB C9 C9 C 0 1 N N N 33.986 4.053 10.624 -0.376 0.198 4.915 C9 3CB 30
3CB C6 C6 C 0 1 N N N 39.825 5.462 10.191 -2.225 2.657 1.702 C6 3CB 31
3CB C8 C8 C 0 1 Y N N 33.119 2.900 10.291 0.640 0.600 5.952 C8 3CB 32
3CB C7 C7 C 0 1 Y N N 33.142 2.365 8.996 0.719 -0.091 7.143 C7 3CB 33
3CB C12 C12 C 0 1 Y N N 32.372 1.236 8.680 1.665 0.279 8.101 C12 3CB 34
3CB C10 C10 C 0 1 Y N N 31.596 0.622 9.686 2.518 1.355 7.850 C10 3CB 35
3CB C11 C11 C 0 1 Y N N 31.563 1.152 10.987 2.425 2.042 6.657 C11 3CB 36
3CB C13 C13 C 0 1 Y N N 32.315 2.306 11.281 1.488 1.666 5.711 C13 3CB 37
3CB N2 N2 N 0 1 N N N 29.343 7.594 15.858 2.866 -1.692 -10.483 N2 3CB 38
3CB C14 C14 C 0 1 N N N 32.373 0.707 7.318 1.759 -0.461 9.376 C14 3CB 39
3CB O2 O2 O 0 1 N N N 31.712 -0.302 7.075 2.670 -0.098 10.299 O2 3CB 40
3CB O5 O5 O 0 1 N N N 33.029 1.297 6.461 1.016 -1.397 9.591 O5 3CB 41
3CB H17 H17 H 0 1 N N N 36.058 6.770 7.830 -0.742 1.257 -0.379 H17 3CB 42
3CB H18 H18 H 0 1 N N N 34.548 9.071 8.880 -0.633 -1.170 -2.070 H18 3CB 43
3CB H191 1H19 H 0 0 N N N 33.611 9.544 6.742 -2.241 1.359 -2.638 H191 3CB 44
3CB H192 2H19 H 0 0 N N N 33.868 7.977 6.136 -1.986 0.032 -3.796 H192 3CB 45
3CB H201 1H20 H 0 0 N N N 36.447 8.289 6.435 -3.090 -1.547 -2.261 H201 3CB 46
3CB H202 2H20 H 0 0 N N N 36.184 9.862 7.030 -3.297 -0.255 -1.055 H202 3CB 47
3CB H31 H31 H 0 1 N N N 32.481 9.214 9.433 0.106 -0.242 -4.489 H31 3CB 48
3CB H321 1H32 H 0 0 N N N 30.569 6.920 8.735 1.651 2.120 -4.571 H321 3CB 49
3CB H322 2H32 H 0 0 N N N 30.046 8.521 8.928 2.715 0.770 -4.109 H322 3CB 50
3CB H16 H16 H 0 1 N N N 31.928 5.907 10.877 0.609 2.189 -6.759 H16 3CB 51
3CB H2 H2 H 0 1 N N N 31.675 5.512 13.293 0.741 1.499 -9.116 H2 3CB 52
3CB H23 H23 H 0 1 N N N 28.624 8.611 13.515 3.304 -1.751 -8.003 H23 3CB 53
3CB H24 H24 H 0 1 N N N 28.948 9.070 11.063 3.165 -1.042 -5.652 H24 3CB 54
3CB HN1 HN1 H 0 1 N N N 30.309 4.973 15.211 1.530 -0.197 -11.978 HN1 3CB 55
3CB HN51 1HN5 H 0 0 N N N 34.762 8.286 3.998 -6.540 -0.343 -2.829 HN51 3CB 56
3CB HN52 2HN5 H 0 0 N N N 35.588 9.217 2.920 -5.730 -1.276 -1.691 HN52 3CB 57
3CB HN3 HN3 H 0 1 N N N 36.778 11.375 4.900 -5.329 1.096 -4.164 HN3 3CB 58
3CB H1 H1 H 0 1 N N N 37.466 7.551 11.631 -2.797 0.454 3.123 H1 3CB 59
3CB H41 1H4 H 0 1 N N N 38.937 5.690 12.189 -4.113 1.676 1.363 H41 3CB 60
3CB H42 2H4 H 0 1 N N N 39.915 7.002 11.758 -2.847 1.263 0.182 H42 3CB 61
3CB HN4 HN4 H 0 1 N N N 36.038 5.573 12.012 -1.266 -2.121 2.584 HN4 3CB 62
3CB H5 H5 H 0 1 N N N 37.192 5.509 9.309 -0.582 0.703 1.963 H5 3CB 63
3CB H31A 1H3 H 0 0 N N N 38.982 7.812 8.961 -3.379 -1.793 2.325 H31A 3CB 64
3CB H32 2H3 H 0 1 N N N 37.450 8.730 9.412 -4.638 -0.639 1.821 H32 3CB 65
3CB H33 3H3 H 0 1 N N N 39.074 8.889 10.268 -3.430 -1.209 0.644 H33 3CB 66
3CB H91 1H9 H 0 1 N N N 33.890 4.849 9.849 -0.680 1.076 4.345 H91 3CB 67
3CB H92 2H9 H 0 1 N N N 33.584 4.600 11.509 -1.248 -0.232 5.409 H92 3CB 68
3CB H61 1H6 H 0 1 N N N 40.069 6.076 9.293 -2.441 3.517 1.068 H61 3CB 69
3CB H62 2H6 H 0 1 N N N 40.721 4.920 10.575 -2.480 2.894 2.735 H62 3CB 70
3CB H63 3H6 H 0 1 N N N 39.091 4.764 9.725 -1.164 2.414 1.636 H63 3CB 71
3CB H7 H7 H 0 1 N N N 33.770 2.835 8.221 0.055 -0.923 7.331 H7 3CB 72
3CB H10 H10 H 0 1 N N N 31.009 -0.282 9.453 3.250 1.649 8.588 H10 3CB 73
3CB H11 H11 H 0 1 N N N 30.954 0.668 11.769 3.084 2.874 6.462 H11 3CB 74
3CB H13 H13 H 0 1 N N N 32.274 2.747 12.291 1.419 2.207 4.778 H13 3CB 75
3CB HN21 1HN2 H 0 0 N N N 28.393 7.604 15.486 2.920 -1.968 -11.412 HN21 3CB 76
3CB HN22 2HN2 H 0 0 N N N 29.289 7.426 16.863 3.341 -2.192 -9.801 HN22 3CB 77
3CB HO2 HO2 H 0 1 N N N 31.713 -0.646 6.189 2.732 -0.582 11.134 HO2 3CB 78
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3CB C15 O1 DOUB N N 1
3CB C15 N17 SING N N 2
3CB C15 C5 SING N N 3
3CB N17 C18 SING N N 4
3CB N17 H17 SING N N 5
3CB C18 C19 SING N N 6
3CB C18 C28 SING N N 7
3CB C18 H18 SING N N 8
3CB C19 C20 SING N N 9
3CB C19 H191 SING N N 10
3CB C19 H192 SING N N 11
3CB C20 C2 SING N N 12
3CB C20 H201 SING N N 13
3CB C20 H202 SING N N 14
3CB C28 O30 DOUB N N 15
3CB C28 N31 SING N N 16
3CB N31 C32 SING N N 17
3CB N31 H31 SING N N 18
3CB C32 C25 SING N N 19
3CB C32 H321 SING N N 20
3CB C32 H322 SING N N 21
3CB C16 C17 SING Y N 22
3CB C16 C25 DOUB Y N 23
3CB C16 H16 SING N N 24
3CB C17 C22 DOUB Y N 25
3CB C17 H2 SING N N 26
3CB C22 C23 SING Y N 27
3CB C22 C26 SING N N 28
3CB C23 C24 DOUB Y N 29
3CB C23 H23 SING N N 30
3CB C24 C25 SING Y N 31
3CB C24 H24 SING N N 32
3CB C26 N1 DOUB N N 33
3CB C26 N2 SING N N 34
3CB N1 HN1 SING N N 35
3CB C2 N5 SING N N 36
3CB C2 N3 DOUB N N 37
3CB N5 HN51 SING N N 38
3CB N5 HN52 SING N N 39
3CB N3 HN3 SING N N 40
3CB C1 C4 SING N N 41
3CB C1 C5 SING N N 42
3CB C1 C3 SING N N 43
3CB C1 H1 SING N N 44
3CB C4 C6 SING N N 45
3CB C4 H41 SING N N 46
3CB C4 H42 SING N N 47
3CB N4 C5 SING N N 48
3CB N4 S1 SING N N 49
3CB N4 HN4 SING N N 50
3CB C5 H5 SING N N 51
3CB C3 H31A SING N N 52
3CB C3 H32 SING N N 53
3CB C3 H33 SING N N 54
3CB S1 O4 DOUB N N 55
3CB S1 O3 DOUB N N 56
3CB S1 C9 SING N N 57
3CB C9 C8 SING N N 58
3CB C9 H91 SING N N 59
3CB C9 H92 SING N N 60
3CB C6 H61 SING N N 61
3CB C6 H62 SING N N 62
3CB C6 H63 SING N N 63
3CB C8 C7 SING Y N 64
3CB C8 C13 DOUB Y N 65
3CB C7 C12 DOUB Y N 66
3CB C7 H7 SING N N 67
3CB C12 C10 SING Y N 68
3CB C12 C14 SING N N 69
3CB C10 C11 DOUB Y N 70
3CB C10 H10 SING N N 71
3CB C11 C13 SING Y N 72
3CB C11 H11 SING N N 73
3CB C13 H13 SING N N 74
3CB N2 HN21 SING N N 75
3CB N2 HN22 SING N N 76
3CB C14 O2 SING N N 77
3CB C14 O5 DOUB N N 78
3CB O2 HO2 SING N N 79
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3CB SMILES ACDLabs 10.04 "O=C(O)c1cc(ccc1)CS(=O)(=O)NC(C(=O)NC(C(=O)NCc2ccc(cc2)C(=[N@H])N)CCC(=[N@H])N)C(C)CC"
3CB SMILES_CANONICAL CACTVS 3.341 "CC[C@@H](C)[C@@H](N[S](=O)(=O)Cc1cccc(c1)C(O)=O)C(=O)N[C@@H](CCC(N)=N)C(=O)NCc2ccc(cc2)C(N)=N"
3CB SMILES CACTVS 3.341 "CC[CH](C)[CH](N[S](=O)(=O)Cc1cccc(c1)C(O)=O)C(=O)N[CH](CCC(N)=N)C(=O)NCc2ccc(cc2)C(N)=N"
3CB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@@H](C)[C@H](C(=O)N[C@@H](CCC(=N)N)C(=O)NCc1ccc(cc1)C(=N)N)NS(=O)(=O)Cc2cccc(c2)C(=O)O"
3CB SMILES "OpenEye OEToolkits" 1.5.0 "CCC(C)C(C(=O)NC(CCC(=N)N)C(=O)NCc1ccc(cc1)C(=N)N)NS(=O)(=O)Cc2cccc(c2)C(=O)O"
3CB InChI InChI 1.03 "InChI=1S/C27H37N7O6S/c1-3-16(2)23(34-41(39,40)15-18-5-4-6-20(13-18)27(37)38)26(36)33-21(11-12-22(28)29)25(35)32-14-17-7-9-19(10-8-17)24(30)31/h4-10,13,16,21,23,34H,3,11-12,14-15H2,1-2H3,(H3,28,29)(H3,30,31)(H,32,35)(H,33,36)(H,37,38)/t16-,21+,23-/m1/s1"
3CB InChIKey InChI 1.03 UBGNMISWPGURDN-XORNHQRDSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3CB "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(3-carboxybenzyl)sulfonyl]-D-isoleucyl-N-(4-carbamimidoylbenzyl)-5-imino-L-ornithinamide"
3CB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[(2R,3R)-1-[[(2S)-5-amino-1-[(4-carbamimidoylphenyl)methylamino]-5-imino-1-oxo-pentan-2-yl]amino]-3-methyl-1-oxo-pentan-2-yl]sulfamoylmethyl]benzoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3CB "Create component" 2004-11-24 RCSB
3CB "Modify descriptor" 2011-06-04 RCSB
3CB "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 3CB
_pdbx_chem_comp_synonyms.name "3-({1-[3-CARBAMIMIDOYL-1-(4-CARBAMIMIDOYL-BENZYLCARBAMOYL)-PROPYLCARBAMOYL]-2-METHYL-BUTYLSULFAMOYL}-METHYL)-BENZOIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##