data_3CM # _chem_comp.id 3CM _chem_comp.name "3-CYCLOHEXYLPROPYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE" _chem_comp.type D-SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C21 H38 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CYMAL-3 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-08-09 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3CM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2HZA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3CM C1 C1 C 0 1 N N R 9.755 36.603 21.082 -4.015 0.965 -0.496 C1 3CM 1 3CM C2 C2 C 0 1 N N R 10.348 35.388 20.302 -5.314 1.249 0.261 C2 3CM 2 3CM C3 C3 C 0 1 N N S 10.905 34.383 21.305 -5.747 -0.016 1.009 C3 3CM 3 3CM C4 C4 C 0 1 N N S 11.974 35.056 22.187 -5.898 -1.163 0.005 C4 3CM 4 3CM C5 C5 C 0 1 N N R 11.342 36.281 22.912 -4.575 -1.354 -0.742 C5 3CM 5 3CM C6 C6 C 0 1 N N N 12.358 37.013 23.761 -4.735 -2.458 -1.789 C6 3CM 6 3CM O2 O2 O 0 1 N N N 9.296 34.806 19.466 -5.101 2.308 1.196 O2 3CM 7 3CM O3 O3 O 0 1 N N N 11.461 33.272 20.564 -6.997 0.218 1.661 O3 3CM 8 3CM O5 O5 O 0 1 N N N 10.788 37.190 21.946 -4.215 -0.132 -1.390 O5 3CM 9 3CM O6 O6 O 0 1 N N N 13.238 37.792 22.952 -3.472 -2.717 -2.406 O6 3CM 10 3CM O1 O1 O 0 1 N N N 8.690 36.087 21.881 -2.982 0.638 0.435 O1 3CM 11 3CM O4 O4 O 0 1 N N N 12.471 34.152 23.154 -6.231 -2.366 0.701 O4 3CM 12 3CM C10 C10 C 0 1 N N R 4.837 36.954 23.178 1.168 1.041 0.191 C10 3CM 13 3CM C20 C20 C 0 1 N N R 4.965 36.480 21.713 0.339 2.011 -0.654 C20 3CM 14 3CM C30 C30 C 0 1 N N R 6.313 35.764 21.603 -1.095 2.047 -0.117 C30 3CM 15 3CM C40 C40 C 0 1 N N S 7.405 36.759 21.988 -1.670 0.627 -0.131 C40 3CM 16 3CM C50 C50 C 0 1 N N R 7.216 37.245 23.405 -0.763 -0.289 0.694 C50 3CM 17 3CM C60 C60 C 0 1 N N N 8.250 38.292 23.850 -1.298 -1.722 0.636 C60 3CM 18 3CM O10 O10 O 0 1 N N N 3.613 37.641 23.337 2.493 0.959 -0.338 O10 3CM 19 3CM O20 O20 O 0 1 N N N 3.914 35.605 21.372 0.910 3.319 -0.578 O20 3CM 20 3CM O30 O30 O 0 1 N N N 6.492 35.316 20.263 -1.894 2.895 -0.945 O30 3CM 21 3CM O50 O50 O 0 1 N N N 5.920 37.851 23.534 0.562 -0.253 0.161 O50 3CM 22 3CM O60 O60 O 0 1 N N N 8.387 38.229 25.292 -0.508 -2.560 1.482 O60 3CM 23 3CM C11 C11 C 0 1 N N N 3.013 37.465 24.637 3.384 0.164 0.446 C11 3CM 24 3CM C21 C21 C 0 1 N N N 1.603 37.991 24.562 4.766 0.148 -0.211 C21 3CM 25 3CM C31 C31 C 0 1 N N N 0.769 36.977 25.344 5.720 -0.704 0.628 C31 3CM 26 3CM C12 C12 C 0 1 N N N -0.702 37.150 25.020 7.101 -0.720 -0.029 C12 3CM 27 3CM C22 C22 C 0 1 N N N -1.497 37.226 26.313 8.021 -1.670 0.740 C22 3CM 28 3CM C32 C32 C 0 1 N N N -2.838 36.539 26.348 9.403 -1.687 0.083 C32 3CM 29 3CM C42 C42 C 0 1 N N N -3.567 36.388 25.001 9.994 -0.276 0.104 C42 3CM 30 3CM C52 C52 C 0 1 N N N -2.660 35.773 23.925 9.074 0.674 -0.665 C52 3CM 31 3CM C62 C62 C 0 1 N N N -1.136 36.045 24.067 7.693 0.691 -0.008 C62 3CM 32 3CM HO6 HO6 H 0 1 N N N 13.865 38.241 23.507 -3.499 -3.408 -3.082 HO6 3CM 33 3CM H61 H61 H 0 1 N N N 11.828 37.680 24.456 -5.097 -3.366 -1.306 H61 3CM 34 3CM H62A H62A H 0 0 N N N 12.950 36.276 24.324 -5.451 -2.140 -2.547 H62A 3CM 35 3CM H5 H5 H 0 1 N N N 10.548 35.903 23.573 -3.795 -1.634 -0.035 H5 3CM 36 3CM H1 H1 H 0 1 N N N 9.398 37.386 20.397 -3.725 1.849 -1.065 H1 3CM 37 3CM H40 H40 H 0 1 N N N 7.357 37.628 21.316 -1.719 0.264 -1.158 H40 3CM 38 3CM H30 H30 H 0 1 N N N 6.356 34.891 22.271 -1.093 2.430 0.904 H30 3CM 39 3CM HO30 HO30 H 0 0 N N N 7.327 34.870 20.187 -1.583 3.809 -0.988 HO30 3CM 40 3CM H20 H20 H 0 1 N N N 4.908 37.333 21.021 0.331 1.676 -1.691 H20 3CM 41 3CM HO20 HO20 H 0 0 N N N 4.013 35.327 20.469 1.822 3.369 -0.898 HO20 3CM 42 3CM H10 H10 H 0 1 N N N 4.878 36.070 23.832 1.209 1.399 1.220 H10 3CM 43 3CM H111 H111 H 0 0 N N N 3.005 36.399 24.909 3.463 0.587 1.448 H111 3CM 44 3CM H112 H112 H 0 0 N N N 3.584 38.020 25.395 3.001 -0.854 0.512 H112 3CM 45 3CM H211 H211 H 0 0 N N N 1.530 38.993 25.010 4.686 -0.275 -1.212 H211 3CM 46 3CM H212 H212 H 0 0 N N N 1.262 38.063 23.519 5.149 1.166 -0.276 H212 3CM 47 3CM H311 H311 H 0 0 N N N 1.084 35.960 25.069 5.799 -0.281 1.630 H311 3CM 48 3CM H312 H312 H 0 0 N N N 0.924 37.134 26.422 5.336 -1.722 0.694 H312 3CM 49 3CM H12 H12 H 0 1 N N N -0.896 38.097 24.495 7.009 -1.060 -1.061 H12 3CM 50 3CM H6 H6 H 0 1 N N N -0.879 36.760 27.095 8.114 -1.331 1.772 H6 3CM 51 3CM H7 H7 H 0 1 N N N -2.674 35.526 26.745 10.058 -2.364 0.631 H7 3CM 52 3CM H421 H421 H 0 0 N N N -4.439 35.732 25.144 10.087 0.064 1.136 H421 3CM 53 3CM H422 H422 H 0 0 N N N -3.891 37.383 24.662 10.978 -0.287 -0.364 H422 3CM 54 3CM H8 H8 H 0 1 N N N -2.801 34.683 23.964 9.496 1.679 -0.650 H8 3CM 55 3CM H9 H9 H 0 1 N N N -0.767 36.322 23.068 7.037 1.368 -0.556 H9 3CM 56 3CM H50 H50 H 0 1 N N N 7.335 36.356 24.042 -0.748 0.051 1.730 H50 3CM 57 3CM H601 H601 H 0 0 N N N 9.220 38.080 23.376 -2.334 -1.737 0.974 H601 3CM 58 3CM H602 H602 H 0 0 N N N 7.913 39.296 23.553 -1.245 -2.088 -0.389 H602 3CM 59 3CM HO60 HO60 H 0 0 N N N 9.024 38.873 25.578 -0.790 -3.484 1.495 HO60 3CM 60 3CM H2 H2 H 0 1 N N N 11.172 35.700 19.643 -6.092 1.538 -0.446 H2 3CM 61 3CM HO2 HO2 H 0 1 N N N 9.646 34.065 18.986 -4.820 3.140 0.790 HO2 3CM 62 3CM H3 H3 H 0 1 N N N 10.110 34.017 21.971 -4.992 -0.277 1.750 H3 3CM 63 3CM HO3 HO3 H 0 1 N N N 11.815 32.632 21.170 -6.975 0.937 2.307 HO3 3CM 64 3CM H4 H4 H 0 1 N N N 12.807 35.378 21.545 -6.687 -0.923 -0.707 H4 3CM 65 3CM HO4 HO4 H 0 1 N N N 13.127 34.586 23.686 -7.056 -2.315 1.202 HO4 3CM 66 3CM H22 H22 H 0 1 N N N -1.679 38.292 26.513 7.600 -2.675 0.725 H22 3CM 67 3CM H32 H32 H 0 1 N N N -3.490 37.132 27.006 9.310 -2.026 -0.948 H32 3CM 68 3CM H52 H52 H 0 1 N N N -2.976 36.188 22.957 8.982 0.335 -1.697 H52 3CM 69 3CM H62 H62 H 0 1 N N N -0.678 35.113 24.430 7.785 1.031 1.024 H62 3CM 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3CM C1 O5 SING N N 1 3CM C1 H1 SING N N 2 3CM C1 O1 SING N N 3 3CM C1 C2 SING N N 4 3CM C2 H2 SING N N 5 3CM C2 O2 SING N N 6 3CM C2 C3 SING N N 7 3CM C3 H3 SING N N 8 3CM C3 O3 SING N N 9 3CM C3 C4 SING N N 10 3CM C4 C5 SING N N 11 3CM C4 H4 SING N N 12 3CM C4 O4 SING N N 13 3CM C5 C6 SING N N 14 3CM C5 H5 SING N N 15 3CM C5 O5 SING N N 16 3CM C6 O6 SING N N 17 3CM C6 H61 SING N N 18 3CM C6 H62A SING N N 19 3CM O2 HO2 SING N N 20 3CM O3 HO3 SING N N 21 3CM O6 HO6 SING N N 22 3CM O1 C40 SING N N 23 3CM O4 HO4 SING N N 24 3CM C10 C20 SING N N 25 3CM C10 H10 SING N N 26 3CM C10 O10 SING N N 27 3CM C10 O50 SING N N 28 3CM C20 C30 SING N N 29 3CM C20 H20 SING N N 30 3CM C20 O20 SING N N 31 3CM C30 C40 SING N N 32 3CM C30 H30 SING N N 33 3CM C30 O30 SING N N 34 3CM C40 H40 SING N N 35 3CM C40 C50 SING N N 36 3CM C50 O50 SING N N 37 3CM C50 H50 SING N N 38 3CM C50 C60 SING N N 39 3CM C60 H601 SING N N 40 3CM C60 H602 SING N N 41 3CM C60 O60 SING N N 42 3CM O10 C11 SING N N 43 3CM O20 HO20 SING N N 44 3CM O30 HO30 SING N N 45 3CM O60 HO60 SING N N 46 3CM C11 H111 SING N N 47 3CM C11 H112 SING N N 48 3CM C11 C21 SING N N 49 3CM C21 H211 SING N N 50 3CM C21 H212 SING N N 51 3CM C21 C31 SING N N 52 3CM C31 H311 SING N N 53 3CM C31 H312 SING N N 54 3CM C31 C12 SING N N 55 3CM C12 H12 SING N N 56 3CM C12 C22 SING N N 57 3CM C12 C62 SING N N 58 3CM C22 H6 SING N N 59 3CM C22 C32 SING N N 60 3CM C22 H22 SING N N 61 3CM C32 H7 SING N N 62 3CM C32 C42 SING N N 63 3CM C32 H32 SING N N 64 3CM C42 H421 SING N N 65 3CM C42 H422 SING N N 66 3CM C42 C52 SING N N 67 3CM C52 H8 SING N N 68 3CM C52 C62 SING N N 69 3CM C52 H52 SING N N 70 3CM C62 H9 SING N N 71 3CM C62 H62 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3CM SMILES ACDLabs 12.01 "O(CCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO" 3CM SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O" 3CM SMILES CACTVS 3.370 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O" 3CM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1CCC(CC1)CCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O" 3CM SMILES "OpenEye OEToolkits" 1.7.0 "C1CCC(CC1)CCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O" 3CM InChI InChI 1.03 "InChI=1S/C21H38O11/c22-9-12-14(24)15(25)17(27)21(30-12)32-19-13(10-23)31-20(18(28)16(19)26)29-8-4-7-11-5-2-1-3-6-11/h11-28H,1-10H2/t12-,13-,14-,15+,16-,17-,18-,19-,20-,21-/m1/s1" 3CM InChIKey InChI 1.03 FDBLAHXBTQUZSM-ZESVGKPKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3CM "SYSTEMATIC NAME" ACDLabs 12.01 "3-cyclohexylpropyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside" 3CM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(3-cyclohexylpropoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3CM "Create component" 2006-08-09 RCSB 3CM "Modify descriptor" 2011-06-04 RCSB 3CM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3CM _pdbx_chem_comp_synonyms.name CYMAL-3 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##