data_3DH # _chem_comp.id 3DH _chem_comp.name "5'-S-ethyl-5'-thioadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms S-adenosylethane _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-20 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3DH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DHY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3DH CB CB C 0 1 N N N 16.181 -15.636 38.008 6.298 -2.597 -0.315 CB 3DH 1 3DH CG CG C 0 1 N N N 17.375 -14.815 37.477 5.538 -1.509 0.447 CG 3DH 2 3DH SD SD S 0 1 N N N 17.851 -13.477 38.695 4.177 -0.890 -0.581 SD 3DH 3 3DH "C5'" "C5'" C 0 1 N N N 18.230 -12.069 37.605 3.408 0.369 0.476 "C5'" 3DH 4 3DH "C4'" "C4'" C 0 1 N N S 18.083 -10.742 38.434 2.223 0.997 -0.260 "C4'" 3DH 5 3DH "O4'" "O4'" O 0 1 N N N 19.100 -10.719 39.413 1.187 0.019 -0.443 "O4'" 3DH 6 3DH "C3'" "C3'" C 0 1 N N S 18.382 -9.509 37.573 1.629 2.141 0.584 "C3'" 3DH 7 3DH "O3'" "O3'" O 0 1 N N N 17.209 -9.047 36.856 1.699 3.378 -0.129 "O3'" 3DH 8 3DH "C2'" "C2'" C 0 1 N N R 18.933 -8.474 38.573 0.154 1.725 0.804 "C2'" 3DH 9 3DH "O2'" "O2'" O 0 1 N N N 18.101 -7.292 38.627 -0.717 2.850 0.679 "O2'" 3DH 10 3DH "C1'" "C1'" C 0 1 N N R 19.007 -9.290 39.895 -0.074 0.717 -0.351 "C1'" 3DH 11 3DH N9 N9 N 0 1 Y N N 20.181 -8.847 40.762 -1.156 -0.213 -0.019 N9 3DH 12 3DH C8 C8 C 0 1 Y N N 21.408 -8.603 40.314 -1.022 -1.412 0.615 C8 3DH 13 3DH N7 N7 N 0 1 Y N N 22.177 -8.205 41.314 -2.188 -1.977 0.749 N7 3DH 14 3DH C5 C5 C 0 1 Y N N 21.448 -8.186 42.411 -3.140 -1.177 0.211 C5 3DH 15 3DH C4 C4 C 0 1 Y N N 20.182 -8.579 42.083 -2.490 -0.033 -0.283 C4 3DH 16 3DH N3 N3 N 0 1 Y N N 19.250 -8.631 43.054 -3.212 0.921 -0.861 N3 3DH 17 3DH C2 C2 C 0 1 Y N N 19.564 -8.328 44.299 -4.519 0.801 -0.970 C2 3DH 18 3DH N1 N1 N 0 1 Y N N 20.789 -7.954 44.623 -5.174 -0.254 -0.519 N1 3DH 19 3DH C6 C6 C 0 1 Y N N 21.755 -7.838 43.713 -4.535 -1.261 0.068 C6 3DH 20 3DH N6 N6 N 0 1 N N N 23.014 -7.471 44.052 -5.231 -2.361 0.539 N6 3DH 21 3DH HB HB H 0 1 N N N 16.318 -15.831 39.082 5.619 -3.416 -0.552 HB 3DH 22 3DH HBA HBA H 0 1 N N N 15.250 -15.070 37.854 6.701 -2.180 -1.237 HBA 3DH 23 3DH HBB HBB H 0 1 N N N 16.124 -16.592 37.466 7.115 -2.969 0.303 HBB 3DH 24 3DH HG HG H 0 1 N N N 18.234 -15.486 37.326 5.135 -1.926 1.370 HG 3DH 25 3DH HGA HGA H 0 1 N N N 17.086 -14.343 36.527 6.216 -0.690 0.684 HGA 3DH 26 3DH "H5'" "H5'" H 0 1 N N N 19.258 -12.159 37.225 3.059 -0.095 1.398 "H5'" 3DH 27 3DH "H5'A" "H5'A" H 0 0 N N N 17.537 -12.058 36.751 4.140 1.141 0.712 "H5'A" 3DH 28 3DH "H4'" "H4'" H 0 1 N N N 17.059 -10.718 38.835 2.548 1.378 -1.228 "H4'" 3DH 29 3DH "H3'" "H3'" H 0 1 N N N 19.106 -9.717 36.771 2.149 2.221 1.539 "H3'" 3DH 30 3DH "HO3'" "HO3'" H 0 0 N N N 16.485 -8.946 37.463 1.338 4.133 0.356 "HO3'" 3DH 31 3DH "H2'" "H2'" H 0 1 N N N 19.915 -8.054 38.309 0.027 1.242 1.773 "H2'" 3DH 32 3DH "HO2'" "HO2'" H 0 0 N N N 17.919 -7.074 39.533 -0.552 3.549 1.326 "HO2'" 3DH 33 3DH "H1'" "H1'" H 0 1 N N N 18.141 -9.146 40.558 -0.290 1.242 -1.282 "H1'" 3DH 34 3DH H8 H8 H 0 1 N N N 21.729 -8.713 39.289 -0.087 -1.833 0.955 H8 3DH 35 3DH H2 H2 H 0 1 N N N 18.807 -8.387 45.067 -5.076 1.594 -1.445 H2 3DH 36 3DH HN6 HN6 H 0 1 N N N 23.569 -7.381 43.225 -4.755 -3.086 0.975 HN6 3DH 37 3DH HN6A HN6A H 0 0 N N N 22.987 -6.595 44.533 -6.194 -2.408 0.434 HN6A 3DH 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DH CG CB SING N N 1 3DH CB HB SING N N 2 3DH CB HBA SING N N 3 3DH CB HBB SING N N 4 3DH CG SD SING N N 5 3DH CG HG SING N N 6 3DH CG HGA SING N N 7 3DH "C5'" SD SING N N 8 3DH "C5'" "C4'" SING N N 9 3DH "C5'" "H5'" SING N N 10 3DH "C5'" "H5'A" SING N N 11 3DH "C3'" "C4'" SING N N 12 3DH "C4'" "O4'" SING N N 13 3DH "C4'" "H4'" SING N N 14 3DH "O4'" "C1'" SING N N 15 3DH "O3'" "C3'" SING N N 16 3DH "C3'" "C2'" SING N N 17 3DH "C3'" "H3'" SING N N 18 3DH "O3'" "HO3'" SING N N 19 3DH "C2'" "O2'" SING N N 20 3DH "C2'" "C1'" SING N N 21 3DH "C2'" "H2'" SING N N 22 3DH "O2'" "HO2'" SING N N 23 3DH "C1'" N9 SING N N 24 3DH "C1'" "H1'" SING N N 25 3DH C8 N9 SING Y N 26 3DH N9 C4 SING Y N 27 3DH C8 N7 DOUB Y N 28 3DH C8 H8 SING N N 29 3DH N7 C5 SING Y N 30 3DH C4 C5 DOUB Y N 31 3DH C5 C6 SING Y N 32 3DH C4 N3 SING Y N 33 3DH N3 C2 DOUB Y N 34 3DH C2 N1 SING Y N 35 3DH C2 H2 SING N N 36 3DH C6 N1 DOUB Y N 37 3DH C6 N6 SING N N 38 3DH N6 HN6 SING N N 39 3DH N6 HN6A SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3DH SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CSCC)N" 3DH SMILES_CANONICAL CACTVS 3.341 "CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 3DH SMILES CACTVS 3.341 "CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 3DH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 3DH SMILES "OpenEye OEToolkits" 1.5.0 "CCSCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" 3DH InChI InChI 1.03 "InChI=1S/C12H17N5O3S/c1-2-21-3-6-8(18)9(19)12(20-6)17-5-16-7-10(13)14-4-15-11(7)17/h4-6,8-9,12,18-19H,2-3H2,1H3,(H2,13,14,15)/t6-,8-,9-,12-/m1/s1" 3DH InChIKey InChI 1.03 HMXHURAGFHWODC-WOUKDFQISA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3DH "SYSTEMATIC NAME" ACDLabs 10.04 "5'-S-ethyl-5'-thioadenosine" 3DH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(ethylsulfanylmethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3DH "Create component" 2008-06-20 RCSB 3DH "Modify descriptor" 2011-06-04 RCSB 3DH "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3DH _pdbx_chem_comp_synonyms.name S-adenosylethane _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##