data_3DO # _chem_comp.id 3DO _chem_comp.name 3-deoxy-beta-D-glucopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-deoxy-beta-D-ribo-hexopyranose; 3-deoxy-beta-D-glucose; 3-deoxy-D-glucose; 3-deoxy-glucose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-26 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3DO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WLJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 3DO 3-deoxy-beta-D-ribo-hexopyranose PDB ? 2 3DO 3-deoxy-beta-D-glucose PDB ? 3 3DO 3-deoxy-D-glucose PDB ? 4 3DO 3-deoxy-glucose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3DO C2 C2 C 0 1 N N R 25.522 32.178 32.476 1.737 0.390 -0.287 C2 3DO 1 3DO C3 C3 C 0 1 N N N 25.431 30.661 32.319 0.846 1.558 0.146 C3 3DO 2 3DO C4 C4 C 0 1 N N S 25.228 29.789 33.539 -0.584 1.301 -0.339 C4 3DO 3 3DO C5 C5 C 0 1 N N R 25.380 30.537 34.856 -1.071 -0.039 0.219 C5 3DO 4 3DO C6 C6 C 0 1 N N N 25.907 29.578 35.892 -2.477 -0.332 -0.310 C6 3DO 5 3DO O1 O1 O 0 1 N Y N 26.531 33.815 33.923 1.956 -2.016 -0.177 O1 3DO 6 3DO O6 O6 O 0 1 N N N 24.915 28.555 36.029 -2.977 -1.523 0.301 O6 3DO 7 3DO O5 O5 O 0 1 N N N 26.259 31.651 34.717 -0.181 -1.077 -0.195 O5 3DO 8 3DO O4 O4 O 0 1 N N N 23.902 29.292 33.445 -1.440 2.349 0.121 O4 3DO 9 3DO O2 O2 O 0 1 N N N 24.408 32.761 31.800 3.059 0.583 0.221 O2 3DO 10 3DO C1 C1 C 0 1 N N R 25.664 32.675 33.917 1.161 -0.915 0.269 C1 3DO 11 3DO H2 H1 H 0 1 N N N 26.434 32.492 31.948 1.769 0.339 -1.375 H2 3DO 12 3DO H3 H2 H 0 1 N N N 24.588 30.461 31.641 0.853 1.639 1.233 H3 3DO 13 3DO H3A H3 H 0 1 N N N 26.368 30.333 31.846 1.219 2.483 -0.293 H3A 3DO 14 3DO H4 H4 H 0 1 N N N 25.951 28.960 33.513 -0.600 1.269 -1.428 H4 3DO 15 3DO H5 H5 H 0 1 N N N 24.386 30.886 35.174 -1.094 0.007 1.308 H5 3DO 16 3DO H61 H6 H 0 1 N N N 26.861 29.143 35.559 -3.136 0.503 -0.071 H61 3DO 17 3DO H62 H7 H 0 1 N N N 26.056 30.096 36.851 -2.438 -0.466 -1.390 H62 3DO 18 3DO HO1 H8 H 0 1 N Y N 26.628 34.135 34.812 1.648 -2.876 0.138 HO1 3DO 19 3DO HO6 H9 H 0 1 N N N 25.201 27.920 36.676 -3.866 -1.769 0.012 HO6 3DO 20 3DO HO4 H10 H 0 1 N Y N 23.719 28.734 34.192 -1.187 3.228 -0.191 HO4 3DO 21 3DO HO2 H11 H 0 1 N Y N 24.445 33.706 31.885 3.677 -0.124 -0.012 HO2 3DO 22 3DO H1 H12 H 0 1 N N N 24.671 32.943 34.307 1.167 -0.880 1.359 H1 3DO 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DO O2 C2 SING N N 1 3DO C3 C2 SING N N 2 3DO C3 C4 SING N N 3 3DO C2 C1 SING N N 4 3DO O4 C4 SING N N 5 3DO C4 C5 SING N N 6 3DO C1 O1 SING N N 7 3DO C1 O5 SING N N 8 3DO O5 C5 SING N N 9 3DO C5 C6 SING N N 10 3DO C6 O6 SING N N 11 3DO C2 H2 SING N N 12 3DO C3 H3 SING N N 13 3DO C3 H3A SING N N 14 3DO C4 H4 SING N N 15 3DO C5 H5 SING N N 16 3DO C6 H61 SING N N 17 3DO C6 H62 SING N N 18 3DO O1 HO1 SING N N 19 3DO O6 HO6 SING N N 20 3DO O4 HO4 SING N N 21 3DO O2 HO2 SING N N 22 3DO C1 H1 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3DO SMILES ACDLabs 12.01 "OC1C(OC(O)C(O)C1)CO" 3DO InChI InChI 1.03 "InChI=1S/C6H12O5/c7-2-5-3(8)1-4(9)6(10)11-5/h3-10H,1-2H2/t3-,4+,5+,6+/m0/s1" 3DO InChIKey InChI 1.03 RJDIFQMDPPUATQ-SLPGGIOYSA-N 3DO SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O)[C@H](O)C[C@@H]1O" 3DO SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O)C[CH]1O" 3DO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]([C@@H]1O)O)CO)O" 3DO SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(OC(C1O)O)CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3DO "SYSTEMATIC NAME" ACDLabs 12.01 3-deoxy-beta-D-ribo-hexopyranose 3DO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,5S,6R)-6-(hydroxymethyl)oxane-2,3,5-triol" 3DO "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcp[3H]b 3DO "COMMON NAME" GMML 1.0 3-deoxy-b-D-glucopyranose 3DO "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-3-deoxy-Glcp # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 3DO "CARBOHYDRATE ISOMER" D PDB ? 3DO "CARBOHYDRATE RING" pyranose PDB ? 3DO "CARBOHYDRATE ANOMER" beta PDB ? 3DO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3DO "Create component" 2013-11-26 PDBJ 3DO "Initial release" 2015-03-25 RCSB 3DO "Other modification" 2020-07-03 RCSB 3DO "Modify name" 2020-07-17 RCSB 3DO "Modify synonyms" 2020-07-17 RCSB 3DO "Modify linking type" 2020-07-17 RCSB 3DO "Modify atom id" 2020-07-17 RCSB 3DO "Modify component atom id" 2020-07-17 RCSB 3DO "Modify leaving atom flag" 2020-07-17 RCSB ##