data_3ED # _chem_comp.id 3ED _chem_comp.name "6-[(3S,4S)-4-amino-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-(2,3-dichlorophenyl)-2-methylpyrimidin-4(3H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 Cl2 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-04 _chem_comp.pdbx_modified_date 2021-10-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.336 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3ED _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7R7L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3ED C02 C1 C 0 1 N N S -13.540 26.966 33.659 5.980 -0.534 -0.857 C02 3ED 1 3ED C03 C2 C 0 1 N N S -14.323 28.293 33.137 7.148 0.382 -0.424 C03 3ED 2 3ED C04 C3 C 0 1 N N N -14.227 29.425 34.190 8.381 -0.456 -0.077 C04 3ED 3 3ED C06 C4 C 0 1 N N N -15.720 26.481 33.615 5.278 1.394 0.458 C06 3ED 4 3ED C07 C5 C 0 1 N N N -14.505 25.867 33.516 4.732 0.150 -0.267 C07 3ED 5 3ED C08 C6 C 0 1 N N N -14.130 25.497 32.165 3.777 0.564 -1.380 C08 3ED 6 3ED C09 C7 C 0 1 N N N -14.680 24.144 31.718 2.574 1.294 -0.772 C09 3ED 7 3ED C11 C8 C 0 1 N N N -13.492 21.782 32.422 0.641 0.119 0.232 C11 3ED 8 3ED C13 C9 C 0 1 N N N -12.013 20.498 30.768 -1.258 -0.313 -1.005 C13 3ED 9 3ED C14 C10 C 0 1 N N N -11.322 20.442 29.410 -1.921 -0.443 -2.353 C14 3ED 10 3ED C16 C11 C 0 1 Y N N -11.094 18.167 31.392 -3.352 -0.842 0.010 C16 3ED 11 3ED C17 C12 C 0 1 Y N N -9.640 18.147 31.724 -4.310 0.164 -0.017 C17 3ED 12 3ED C19 C13 C 0 1 Y N N -8.811 16.937 31.394 -5.650 -0.163 -0.122 C19 3ED 13 3ED C21 C14 C 0 1 Y N N -9.453 15.732 30.725 -6.036 -1.489 -0.200 C21 3ED 14 3ED C22 C15 C 0 1 Y N N -10.966 15.753 30.382 -5.083 -2.492 -0.172 C22 3ED 15 3ED C23 C16 C 0 1 Y N N -11.766 16.920 30.699 -3.743 -2.172 -0.074 C23 3ED 16 3ED C24 C17 C 0 1 N N N -13.381 20.690 33.381 -0.060 -0.083 1.410 C24 3ED 17 3ED C25 C18 C 0 1 N N N -12.562 19.455 33.027 -1.420 -0.410 1.332 C25 3ED 18 3ED C27 C19 C 0 1 N N N -14.850 23.432 34.142 2.842 -0.060 1.349 C27 3ED 19 3ED C28 C20 C 0 1 N N N -14.338 24.791 34.555 4.044 -0.780 0.726 C28 3ED 20 3ED N01 N1 N 0 1 N N N -13.170 27.112 34.977 6.144 -1.881 -0.293 N01 3ED 21 3ED N10 N2 N 0 1 N N N -14.312 23.051 32.752 1.982 0.442 0.268 N10 3ED 22 3ED N12 N3 N 0 1 N N N -12.820 21.705 31.127 0.009 -0.008 -0.946 N12 3ED 23 3ED N15 N4 N 0 1 N N N -11.893 19.371 31.730 -1.994 -0.515 0.115 N15 3ED 24 3ED O05 O1 O 0 1 N N N -15.534 27.949 32.968 6.663 1.072 0.748 O05 3ED 25 3ED O26 O2 O 0 1 N N N -12.474 18.611 33.758 -2.073 -0.595 2.346 O26 3ED 26 3ED CL18 CL1 CL 0 0 N N N -8.903 19.557 32.503 -3.826 1.828 0.081 CL18 3ED 27 3ED CL20 CL2 CL 0 0 N N N -7.007 16.927 31.812 -6.849 1.092 -0.156 CL20 3ED 28 3ED H1 H1 H 0 1 N N N -12.670 26.799 33.007 5.912 -0.581 -1.944 H1 3ED 29 3ED H2 H2 H 0 1 N N N -13.836 28.629 32.210 7.384 1.094 -1.215 H2 3ED 30 3ED H3 H3 H 0 1 N N N -13.174 29.712 34.326 8.686 -1.033 -0.951 H3 3ED 31 3ED H4 H4 H 0 1 N N N -14.803 30.296 33.845 9.194 0.203 0.225 H4 3ED 32 3ED H5 H5 H 0 1 N N N -14.636 29.071 35.147 8.140 -1.135 0.741 H5 3ED 33 3ED H6 H6 H 0 1 N N N -16.021 26.564 34.670 5.222 2.267 -0.191 H6 3ED 34 3ED H7 H7 H 0 1 N N N -16.481 25.913 33.060 4.724 1.570 1.380 H7 3ED 35 3ED H8 H8 H 0 1 N N N -13.032 25.460 32.108 4.293 1.229 -2.073 H8 3ED 36 3ED H9 H9 H 0 1 N N N -14.507 26.268 31.477 3.434 -0.322 -1.913 H9 3ED 37 3ED H10 H10 H 0 1 N N N -15.775 24.208 31.630 2.901 2.235 -0.331 H10 3ED 38 3ED H11 H11 H 0 1 N N N -14.248 23.881 30.741 1.834 1.490 -1.549 H11 3ED 39 3ED H12 H12 H 0 1 N N N -11.534 21.366 28.852 -1.189 -0.249 -3.137 H12 3ED 40 3ED H13 H13 H 0 1 N N N -10.236 20.342 29.555 -2.317 -1.452 -2.467 H13 3ED 41 3ED H14 H14 H 0 1 N N N -11.697 19.577 28.843 -2.735 0.277 -2.428 H14 3ED 42 3ED H15 H15 H 0 1 N N N -8.857 14.863 30.489 -7.082 -1.742 -0.281 H15 3ED 43 3ED H16 H16 H 0 1 N N N -11.424 14.898 29.907 -5.387 -3.526 -0.237 H16 3ED 44 3ED H17 H17 H 0 1 N N N -12.819 16.935 30.461 -3.001 -2.956 -0.053 H17 3ED 45 3ED H18 H18 H 0 1 N N N -13.877 20.756 34.338 0.432 0.010 2.367 H18 3ED 46 3ED H19 H19 H 0 1 N N N -15.949 23.454 34.111 2.280 -0.757 1.970 H19 3ED 47 3ED H20 H20 H 0 1 N N N -14.519 22.682 34.876 3.191 0.774 1.958 H20 3ED 48 3ED H21 H21 H 0 1 N N N -13.266 24.699 34.784 3.702 -1.676 0.208 H21 3ED 49 3ED H22 H22 H 0 1 N N N -14.881 25.101 35.460 4.747 -1.059 1.511 H22 3ED 50 3ED H23 H23 H 0 1 N N N -12.691 26.289 35.282 6.978 -2.323 -0.651 H23 3ED 51 3ED H24 H24 H 0 1 N N N -12.565 27.903 35.068 6.154 -1.852 0.715 H24 3ED 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3ED C14 C13 SING N N 1 3ED C22 C23 DOUB Y N 2 3ED C22 C21 SING Y N 3 3ED C23 C16 SING Y N 4 3ED C21 C19 DOUB Y N 5 3ED C13 N12 DOUB N N 6 3ED C13 N15 SING N N 7 3ED N12 C11 SING N N 8 3ED C16 C17 DOUB Y N 9 3ED C16 N15 SING N N 10 3ED C19 C17 SING Y N 11 3ED C19 CL20 SING N N 12 3ED C09 C08 SING N N 13 3ED C09 N10 SING N N 14 3ED C17 CL18 SING N N 15 3ED N15 C25 SING N N 16 3ED C08 C07 SING N N 17 3ED C11 N10 SING N N 18 3ED C11 C24 DOUB N N 19 3ED N10 C27 SING N N 20 3ED O05 C03 SING N N 21 3ED O05 C06 SING N N 22 3ED C25 C24 SING N N 23 3ED C25 O26 DOUB N N 24 3ED C03 C02 SING N N 25 3ED C03 C04 SING N N 26 3ED C07 C06 SING N N 27 3ED C07 C02 SING N N 28 3ED C07 C28 SING N N 29 3ED C02 N01 SING N N 30 3ED C27 C28 SING N N 31 3ED C02 H1 SING N N 32 3ED C03 H2 SING N N 33 3ED C04 H3 SING N N 34 3ED C04 H4 SING N N 35 3ED C04 H5 SING N N 36 3ED C06 H6 SING N N 37 3ED C06 H7 SING N N 38 3ED C08 H8 SING N N 39 3ED C08 H9 SING N N 40 3ED C09 H10 SING N N 41 3ED C09 H11 SING N N 42 3ED C14 H12 SING N N 43 3ED C14 H13 SING N N 44 3ED C14 H14 SING N N 45 3ED C21 H15 SING N N 46 3ED C22 H16 SING N N 47 3ED C23 H17 SING N N 48 3ED C24 H18 SING N N 49 3ED C27 H19 SING N N 50 3ED C27 H20 SING N N 51 3ED C28 H21 SING N N 52 3ED C28 H22 SING N N 53 3ED N01 H23 SING N N 54 3ED N01 H24 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3ED SMILES ACDLabs 12.01 "Clc1cccc(c1Cl)N1C(=O)C=C(N=C1C)N1CCC2(CC1)COC(C)C2N" 3ED InChI InChI 1.03 "InChI=1S/C20H24Cl2N4O2/c1-12-19(23)20(11-28-12)6-8-25(9-7-20)16-10-17(27)26(13(2)24-16)15-5-3-4-14(21)18(15)22/h3-5,10,12,19H,6-9,11,23H2,1-2H3/t12-,19+/m0/s1" 3ED InChIKey InChI 1.03 WYUIJDCKOPRFJO-HXPMCKFVSA-N 3ED SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1OCC2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(Cl)c4Cl)[C@@H]1N" 3ED SMILES CACTVS 3.385 "C[CH]1OCC2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(Cl)c4Cl)[CH]1N" 3ED SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H](C2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(c4Cl)Cl)CO1)N" 3ED SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(c4Cl)Cl)CO1)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3ED "SYSTEMATIC NAME" ACDLabs 12.01 "6-[(3S,4S)-4-amino-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-(2,3-dichlorophenyl)-2-methylpyrimidin-4(3H)-one" 3ED "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[(3~{S},4~{S})-4-azanyl-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-[2,3-bis(chloranyl)phenyl]-2-methyl-pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3ED "Create component" 2021-07-04 RCSB 3ED "Initial release" 2021-10-27 RCSB ##