data_3F9 # _chem_comp.id 3F9 _chem_comp.name "N-{[(3R)-1-(2,3-dihydro-1H-inden-2-yl)piperidin-3-yl]methyl}-N-(2-methoxyethyl)naphthalene-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H34 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-08-07 _chem_comp.pdbx_modified_date 2014-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.592 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3F9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4TPK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3F9 N1 N1 N 0 1 N N N 4.071 7.251 12.521 -1.309 0.195 0.752 N1 3F9 1 3F9 C4 C1 C 0 1 Y N N 6.253 14.277 7.450 6.780 1.851 -2.265 C4 3F9 2 3F9 C5 C2 C 0 1 Y N N 2.612 12.269 16.117 -7.199 -1.051 -1.565 C5 3F9 3 3F9 C6 C3 C 0 1 Y N N 1.811 9.706 16.910 -6.194 1.413 -0.712 C6 3F9 4 3F9 C7 C4 C 0 1 Y N N 3.177 11.420 13.954 -5.195 -2.173 -0.720 C7 3F9 5 3F9 C8 C5 C 0 1 Y N N 3.244 10.353 13.070 -3.988 -2.103 -0.102 C8 3F9 6 3F9 C10 C6 C 0 1 Y N N 5.834 13.034 7.905 6.099 1.978 -1.070 C10 3F9 7 3F9 C13 C7 C 0 1 Y N N 2.294 9.918 15.625 -5.440 0.246 -0.491 C13 3F9 8 3F9 C15 C8 C 0 1 Y N N 7.448 13.070 9.568 6.257 -0.385 -0.719 C15 3F9 9 3F9 C17 C9 C 0 1 N N N 2.954 8.018 12.523 -2.157 -0.821 1.007 C17 3F9 10 3F9 C20 C10 C 0 1 N N N 8.091 9.783 13.913 1.805 -2.723 -0.094 C20 3F9 11 3F9 C21 C11 C 0 1 N N N 6.978 8.836 14.221 0.696 -1.967 0.642 C21 3F9 12 3F9 C22 C12 C 0 1 N N N 7.542 10.854 13.027 3.141 -2.471 0.608 C22 3F9 13 3F9 C24 C13 C 0 1 N N R 6.408 8.213 12.957 1.042 -0.476 0.679 C24 3F9 14 3F9 C26 C14 C 0 1 N N N 5.186 7.427 13.467 -0.032 0.278 1.465 C26 3F9 15 3F9 C28 C15 C 0 1 N N N 3.426 4.882 12.085 -2.074 2.501 0.473 C28 3F9 16 3F9 C1 C16 C 0 1 Y N N 2.128 12.053 17.401 -7.905 0.097 -1.753 C1 3F9 17 3F9 C2 C17 C 0 1 Y N N 1.731 10.778 17.794 -7.404 1.326 -1.327 C2 3F9 18 3F9 C3 C18 C 0 1 Y N N 7.305 14.908 8.096 7.201 0.604 -2.689 C3 3F9 19 3F9 C9 C19 C 0 1 Y N N 7.889 14.262 9.171 6.940 -0.511 -1.918 C9 3F9 20 3F9 C11 C20 C 0 1 Y N N 2.372 8.852 14.732 -4.189 0.300 0.141 C11 3F9 21 3F9 C12 C21 C 0 1 Y N N 2.693 11.200 15.234 -5.948 -1.003 -0.928 C12 3F9 22 3F9 C14 C22 C 0 1 Y N N 2.872 9.065 13.448 -3.474 -0.870 0.337 C14 3F9 23 3F9 C16 C23 C 0 1 Y N N 6.428 12.446 8.946 5.836 0.861 -0.295 C16 3F9 24 3F9 C18 C24 C 0 1 N N N 7.894 12.269 10.606 5.853 -1.435 0.294 C18 3F9 25 3F9 C19 C25 C 0 1 N N N 6.191 11.199 9.573 5.120 0.734 1.032 C19 3F9 26 3F9 C23 C26 C 0 1 N N N 6.032 9.297 11.944 2.400 -0.289 1.359 C23 3F9 27 3F9 C25 C27 C 0 1 N N N 6.681 11.472 10.965 4.765 -0.763 1.159 C25 3F9 28 3F9 C27 C28 C 0 1 N N N 4.218 6.112 11.599 -1.661 1.212 -0.241 C27 3F9 29 3F9 N2 N2 N 0 1 N N N 7.103 10.288 11.742 3.427 -1.031 0.616 N2 3F9 30 3F9 O1 O1 O 0 1 N N N 2.030 7.833 11.735 -1.839 -1.698 1.787 O1 3F9 31 3F9 O2 O2 O 0 1 N N N 2.514 5.211 13.135 -0.936 3.070 1.124 O2 3F9 32 3F9 C33 C29 C 0 1 N N N 1.172 4.892 12.756 -1.214 4.284 1.824 C33 3F9 33 3F9 H1 H1 H 0 1 N N N 5.767 14.745 6.606 6.979 2.724 -2.869 H1 3F9 34 3F9 H2 H2 H 0 1 N N N 2.922 13.257 15.809 -7.602 -1.996 -1.900 H2 3F9 35 3F9 H3 H3 H 0 1 N N N 1.501 8.719 17.220 -5.817 2.372 -0.387 H3 3F9 36 3F9 H4 H4 H 0 1 N N N 3.497 12.406 13.650 -5.577 -3.127 -1.051 H4 3F9 37 3F9 H5 H5 H 0 1 N N N 3.594 10.525 12.063 -3.416 -3.005 0.055 H5 3F9 38 3F9 H6 H6 H 0 1 N N N 5.015 12.535 7.409 5.770 2.952 -0.739 H6 3F9 39 3F9 H7 H7 H 0 1 N N N 8.904 9.251 13.398 1.585 -3.791 -0.086 H7 3F9 40 3F9 H8 H8 H 0 1 N N N 8.474 10.226 14.844 1.862 -2.371 -1.125 H8 3F9 41 3F9 H9 H9 H 0 1 N N N 6.178 9.383 14.742 -0.251 -2.109 0.120 H9 3F9 42 3F9 H10 H10 H 0 1 N N N 7.360 8.036 14.872 0.610 -2.347 1.660 H10 3F9 43 3F9 H11 H11 H 0 1 N N N 8.323 11.606 12.843 3.086 -2.836 1.634 H11 3F9 44 3F9 H12 H12 H 0 1 N N N 6.684 11.330 13.524 3.935 -2.996 0.077 H12 3F9 45 3F9 H13 H13 H 0 1 N N N 7.139 7.521 12.513 1.087 -0.088 -0.339 H13 3F9 46 3F9 H14 H14 H 0 1 N N N 4.795 7.955 14.349 0.260 1.324 1.567 H14 3F9 47 3F9 H15 H15 H 0 1 N N N 5.533 6.426 13.763 -0.138 -0.167 2.454 H15 3F9 48 3F9 H16 H16 H 0 1 N N N 2.858 4.468 11.238 -2.468 3.210 -0.255 H16 3F9 49 3F9 H17 H17 H 0 1 N N N 4.135 4.127 12.455 -2.841 2.276 1.214 H17 3F9 50 3F9 H18 H18 H 0 1 N N N 2.060 12.877 18.096 -8.869 0.056 -2.239 H18 3F9 51 3F9 H19 H19 H 0 1 N N N 1.357 10.619 18.795 -7.985 2.223 -1.489 H19 3F9 52 3F9 H20 H20 H 0 1 N N N 7.658 15.875 7.770 7.734 0.503 -3.623 H20 3F9 53 3F9 H21 H21 H 0 1 N N N 8.711 14.729 9.693 7.269 -1.484 -2.250 H21 3F9 54 3F9 H22 H22 H 0 1 N N N 2.047 7.867 15.032 -3.784 1.247 0.468 H22 3F9 55 3F9 H23 H23 H 0 1 N N N 8.713 11.614 10.275 5.447 -2.311 -0.211 H23 3F9 56 3F9 H24 H24 H 0 1 N N N 8.232 12.878 11.457 6.707 -1.714 0.910 H24 3F9 57 3F9 H25 H25 H 0 1 N N N 5.122 10.941 9.566 5.777 1.037 1.847 H25 3F9 58 3F9 H26 H26 H 0 1 N N N 6.766 10.392 9.095 4.212 1.338 1.032 H26 3F9 59 3F9 H27 H27 H 0 1 N N N 5.134 9.819 12.306 2.656 0.770 1.373 H27 3F9 60 3F9 H28 H28 H 0 1 N N N 5.813 8.815 10.980 2.349 -0.665 2.381 H28 3F9 61 3F9 H29 H29 H 0 1 N N N 5.958 12.082 11.526 4.837 -1.092 2.196 H29 3F9 62 3F9 H30 H30 H 0 1 N N N 5.283 5.846 11.528 -0.800 1.410 -0.879 H30 3F9 63 3F9 H31 H31 H 0 1 N N N 3.847 6.406 10.606 -2.491 0.853 -0.850 H31 3F9 64 3F9 H33 H33 H 0 1 N N N 0.487 5.152 13.576 -0.299 4.652 2.290 H33 3F9 65 3F9 H34 H34 H 0 1 N N N 0.900 5.463 11.856 -1.590 5.030 1.124 H34 3F9 66 3F9 H35 H35 H 0 1 N N N 1.097 3.815 12.544 -1.963 4.096 2.593 H35 3F9 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3F9 C4 C10 DOUB Y N 1 3F9 C4 C3 SING Y N 2 3F9 C10 C16 SING Y N 3 3F9 C3 C9 DOUB Y N 4 3F9 C16 C15 DOUB Y N 5 3F9 C16 C19 SING N N 6 3F9 C9 C15 SING Y N 7 3F9 C15 C18 SING N N 8 3F9 C19 C25 SING N N 9 3F9 C18 C25 SING N N 10 3F9 C25 N2 SING N N 11 3F9 C27 C28 SING N N 12 3F9 C27 N1 SING N N 13 3F9 O1 C17 DOUB N N 14 3F9 N2 C23 SING N N 15 3F9 N2 C22 SING N N 16 3F9 C23 C24 SING N N 17 3F9 C28 O2 SING N N 18 3F9 N1 C17 SING N N 19 3F9 N1 C26 SING N N 20 3F9 C17 C14 SING N N 21 3F9 C33 O2 SING N N 22 3F9 C24 C26 SING N N 23 3F9 C24 C21 SING N N 24 3F9 C22 C20 SING N N 25 3F9 C8 C14 DOUB Y N 26 3F9 C8 C7 SING Y N 27 3F9 C14 C11 SING Y N 28 3F9 C20 C21 SING N N 29 3F9 C7 C12 DOUB Y N 30 3F9 C11 C13 DOUB Y N 31 3F9 C12 C13 SING Y N 32 3F9 C12 C5 SING Y N 33 3F9 C13 C6 SING Y N 34 3F9 C5 C1 DOUB Y N 35 3F9 C6 C2 DOUB Y N 36 3F9 C1 C2 SING Y N 37 3F9 C4 H1 SING N N 38 3F9 C5 H2 SING N N 39 3F9 C6 H3 SING N N 40 3F9 C7 H4 SING N N 41 3F9 C8 H5 SING N N 42 3F9 C10 H6 SING N N 43 3F9 C20 H7 SING N N 44 3F9 C20 H8 SING N N 45 3F9 C21 H9 SING N N 46 3F9 C21 H10 SING N N 47 3F9 C22 H11 SING N N 48 3F9 C22 H12 SING N N 49 3F9 C24 H13 SING N N 50 3F9 C26 H14 SING N N 51 3F9 C26 H15 SING N N 52 3F9 C28 H16 SING N N 53 3F9 C28 H17 SING N N 54 3F9 C1 H18 SING N N 55 3F9 C2 H19 SING N N 56 3F9 C3 H20 SING N N 57 3F9 C9 H21 SING N N 58 3F9 C11 H22 SING N N 59 3F9 C18 H23 SING N N 60 3F9 C18 H24 SING N N 61 3F9 C19 H25 SING N N 62 3F9 C19 H26 SING N N 63 3F9 C23 H27 SING N N 64 3F9 C23 H28 SING N N 65 3F9 C25 H29 SING N N 66 3F9 C27 H30 SING N N 67 3F9 C27 H31 SING N N 68 3F9 C33 H33 SING N N 69 3F9 C33 H34 SING N N 70 3F9 C33 H35 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3F9 SMILES ACDLabs 12.01 "O=C(c2cc1ccccc1cc2)N(CCOC)CC5CCCN(C4Cc3ccccc3C4)C5" 3F9 InChI InChI 1.03 "InChI=1S/C29H34N2O2/c1-33-16-15-31(29(32)27-13-12-23-8-2-3-9-24(23)17-27)21-22-7-6-14-30(20-22)28-18-25-10-4-5-11-26(25)19-28/h2-5,8-13,17,22,28H,6-7,14-16,18-21H2,1H3/t22-/m1/s1" 3F9 InChIKey InChI 1.03 NRBCHFHGWACYAH-JOCHJYFZSA-N 3F9 SMILES_CANONICAL CACTVS 3.385 "COCCN(C[C@@H]1CCCN(C1)C2Cc3ccccc3C2)C(=O)c4ccc5ccccc5c4" 3F9 SMILES CACTVS 3.385 "COCCN(C[CH]1CCCN(C1)C2Cc3ccccc3C2)C(=O)c4ccc5ccccc5c4" 3F9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "COCCN(C[C@@H]1CCCN(C1)C2Cc3ccccc3C2)C(=O)c4ccc5ccccc5c4" 3F9 SMILES "OpenEye OEToolkits" 1.9.2 "COCCN(CC1CCCN(C1)C2Cc3ccccc3C2)C(=O)c4ccc5ccccc5c4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3F9 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{[(3R)-1-(2,3-dihydro-1H-inden-2-yl)piperidin-3-yl]methyl}-N-(2-methoxyethyl)naphthalene-2-carboxamide" 3F9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[[(3R)-1-(2,3-dihydro-1H-inden-2-yl)piperidin-3-yl]methyl]-N-(2-methoxyethyl)naphthalene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3F9 "Create component" 2014-08-07 RCSB 3F9 "Modify descriptor" 2014-09-05 RCSB 3F9 "Initial release" 2014-10-22 RCSB #