data_3GM # _chem_comp.id 3GM _chem_comp.name "(2s)-6-[[(1r,2s)-2-(4-azanylbutanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H30 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-13 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3GM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CF2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3GM C1 C1 C 0 1 Y N N 8.246 -40.779 1.006 0.876 -5.102 -0.166 C1 3GM 1 3GM C2 C2 C 0 1 Y N N 9.068 -41.079 -0.057 -0.129 -4.251 -0.587 C2 3GM 2 3GM C3 C3 C 0 1 Y N N 7.750 -41.789 1.799 2.132 -4.600 0.113 C3 3GM 3 3GM C4 C4 C 0 1 Y N N 9.403 -42.383 -0.341 0.126 -2.901 -0.730 C4 3GM 4 3GM C5 C5 C 0 1 Y N N 11.385 -44.623 -1.501 -0.822 -0.893 1.429 C5 3GM 5 3GM C6 C6 C 0 1 Y N N 12.411 -44.563 -2.412 -2.202 -0.776 1.418 C6 3GM 6 3GM C7 C7 C 0 1 Y N N 12.918 -45.295 0.200 -0.650 0.941 -0.113 C7 3GM 7 3GM C8 C8 C 0 1 Y N N 8.095 -43.084 1.508 2.390 -3.247 -0.030 C8 3GM 8 3GM C9 C9 C 0 1 Y N N 8.904 -43.390 0.455 1.385 -2.396 -0.452 C9 3GM 9 3GM C10 C10 C 0 1 Y N N 11.625 -44.989 -0.190 -0.045 -0.044 0.673 C10 3GM 10 3GM C11 C11 C 0 1 Y N N 13.688 -44.864 -2.012 -2.817 0.196 0.645 C11 3GM 11 3GM C12 C12 C 0 1 Y N N 13.943 -45.234 -0.715 -2.047 1.059 -0.126 C12 3GM 12 3GM C13 C13 C 0 1 N N N 13.244 -45.695 1.593 0.177 1.852 -0.926 C13 3GM 13 3GM C14 C14 C 0 1 N N N 9.135 -47.560 1.768 5.355 0.320 -0.049 C14 3GM 14 3GM C15 C15 C 0 1 N N N 17.620 -44.344 -5.048 -8.470 0.359 0.316 C15 3GM 15 3GM C16 C16 C 0 1 N N N 7.662 -44.287 2.243 3.661 -2.460 0.207 C16 3GM 16 3GM C17 C17 C 0 1 N N N 16.092 -44.624 -0.937 -3.989 2.345 -0.592 C17 3GM 17 3GM C18 C18 C 0 1 N N R 9.130 -44.853 0.354 1.913 -0.979 -0.528 C18 3GM 18 3GM C19 C19 C 0 1 N N S 8.026 -45.396 1.273 3.450 -1.120 -0.530 C19 3GM 19 3GM C20 C20 C 0 1 N N S 15.996 -44.794 -2.436 -4.773 1.036 -0.416 C20 3GM 20 3GM C21 C21 C 0 1 N N N 10.544 -45.069 0.845 1.456 -0.177 0.692 C21 3GM 21 3GM C22 C22 C 0 1 N N N 9.916 -47.961 2.987 5.999 1.454 0.706 C22 3GM 22 3GM C23 C23 C 0 1 N N N 18.008 -44.040 -3.630 -7.034 0.049 -0.021 C23 3GM 23 3GM C24 C24 C 0 1 N N N 16.677 -43.619 -3.087 -6.231 1.350 -0.073 C24 3GM 24 3GM C25 C25 C 0 1 N N N 9.483 -49.323 3.484 7.443 1.629 0.232 C25 3GM 25 3GM C26 C26 C 0 1 N N N 9.146 -49.276 4.962 8.096 2.780 0.999 C26 3GM 26 3GM N27 N27 N 0 1 N N N 8.263 -46.560 2.090 4.075 -0.018 0.204 N27 3GM 27 3GM N28 N28 N 0 1 N N N 10.391 -49.216 5.766 9.482 2.948 0.543 N28 3GM 28 3GM O29 O29 O 0 1 N N N 14.059 -44.997 2.242 0.385 1.602 -2.096 O29 3GM 29 3GM O30 O30 O 0 1 N N N 17.146 -45.503 -5.243 -9.365 -0.636 0.416 O30 3GM 30 3GM O31 O31 O 0 1 N N N 12.675 -46.727 2.026 0.701 2.961 -0.370 O31 3GM 31 3GM O32 O32 O 0 1 N N N 9.276 -48.049 0.655 5.989 -0.289 -0.885 O32 3GM 32 3GM O33 O33 O 0 1 N N N 17.834 -43.367 -5.820 -8.815 1.503 0.496 O33 3GM 33 3GM O34 O34 O 0 1 N N N 15.227 -45.550 -0.307 -2.629 2.014 -0.896 O34 3GM 34 3GM O35 O35 O 0 1 N N N 14.669 -44.791 -2.971 -4.175 0.297 0.655 O35 3GM 35 3GM H1 H1 H 0 1 N N N 7.990 -39.751 1.218 0.677 -6.157 -0.049 H1 3GM 36 3GM H2 H2 H 0 1 N N N 9.454 -40.282 -0.675 -1.112 -4.641 -0.806 H2 3GM 37 3GM H3 H3 H 0 1 N N N 7.102 -41.566 2.634 2.916 -5.266 0.442 H3 3GM 38 3GM H4 H4 H 0 1 N N N 10.048 -42.613 -1.176 -0.659 -2.237 -1.059 H4 3GM 39 3GM H5 H5 H 0 1 N N N 10.379 -44.382 -1.812 -0.352 -1.651 2.039 H5 3GM 40 3GM H6 H6 H 0 1 N N N 12.214 -44.281 -3.436 -2.803 -1.447 2.014 H6 3GM 41 3GM H161 H161 H 0 0 N N N 8.206 -44.392 3.193 3.806 -2.286 1.273 H161 3GM 42 3GM H162 H162 H 0 0 N N N 6.580 -44.267 2.440 4.517 -2.990 -0.211 H162 3GM 43 3GM H18 H18 H 0 1 N N N 9.002 -45.217 -0.676 1.575 -0.499 -1.446 H18 3GM 44 3GM H211 H211 H 0 0 N N N 10.591 -46.068 1.302 1.909 0.814 0.665 H211 3GM 45 3GM H212 H212 H 0 0 N N N 10.754 -44.306 1.609 1.763 -0.692 1.602 H212 3GM 46 3GM H31 H31 H 0 1 N N N 12.958 -46.895 2.917 1.173 3.567 -0.959 H31 3GM 47 3GM H221 H221 H 0 0 N N N 10.986 -47.994 2.734 5.443 2.374 0.524 H221 3GM 48 3GM H222 H222 H 0 0 N N N 9.750 -47.218 3.781 5.991 1.230 1.773 H222 3GM 49 3GM H27 H27 H 0 1 N N N 7.756 -46.640 2.948 3.568 0.469 0.873 H27 3GM 50 3GM H231 H231 H 0 0 N N N 18.398 -44.929 -3.113 -6.615 -0.606 0.742 H231 3GM 51 3GM H232 H232 H 0 0 N N N 18.748 -43.228 -3.573 -6.987 -0.446 -0.991 H232 3GM 52 3GM H30 H30 H 0 1 N N N 16.926 -45.605 -6.161 -10.274 -0.389 0.634 H30 3GM 53 3GM H19 H19 H 0 1 N N N 7.144 -45.587 0.645 3.832 -1.174 -1.550 H19 3GM 54 3GM H171 H171 H 0 0 N N N 17.127 -44.807 -0.612 -4.418 2.923 -1.411 H171 3GM 55 3GM H172 H172 H 0 0 N N N 15.797 -43.600 -0.663 -4.030 2.925 0.329 H172 3GM 56 3GM H20 H20 H 0 1 N N N 16.518 -45.718 -2.726 -4.729 0.454 -1.336 H20 3GM 57 3GM H241 H241 H 0 0 N N N 16.050 -43.243 -3.909 -6.278 1.846 0.896 H241 3GM 58 3GM H242 H242 H 0 0 N N N 16.822 -42.823 -2.342 -6.650 2.006 -0.837 H242 3GM 59 3GM H251 H251 H 0 0 N N N 8.594 -49.646 2.922 7.999 0.709 0.414 H251 3GM 60 3GM H252 H252 H 0 0 N N N 10.300 -50.042 3.323 7.450 1.853 -0.835 H252 3GM 61 3GM H261 H261 H 0 0 N N N 8.536 -48.384 5.168 7.540 3.700 0.817 H261 3GM 62 3GM H262 H262 H 0 0 N N N 8.579 -50.179 5.235 8.089 2.557 2.065 H262 3GM 63 3GM H281 H281 H 0 0 N N N 10.159 -49.185 6.738 9.936 3.703 1.035 H281 3GM 64 3GM H282 H282 H 0 0 N N N 10.946 -50.027 5.581 10.002 2.089 0.641 H282 3GM 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3GM C1 C2 SING Y N 1 3GM C1 C3 DOUB Y N 2 3GM C2 C4 DOUB Y N 3 3GM C3 C8 SING Y N 4 3GM C4 C9 SING Y N 5 3GM C5 C6 SING Y N 6 3GM C5 C10 DOUB Y N 7 3GM C6 C11 DOUB Y N 8 3GM C7 C10 SING Y N 9 3GM C7 C12 DOUB Y N 10 3GM C7 C13 SING N N 11 3GM C8 C9 DOUB Y N 12 3GM C8 C16 SING N N 13 3GM C9 C18 SING N N 14 3GM C10 C21 SING N N 15 3GM C11 C12 SING Y N 16 3GM C11 O35 SING N N 17 3GM C12 O34 SING N N 18 3GM C13 O29 DOUB N N 19 3GM C13 O31 SING N N 20 3GM C14 C22 SING N N 21 3GM C14 N27 SING N N 22 3GM C14 O32 DOUB N N 23 3GM C15 C23 SING N N 24 3GM C15 O30 SING N N 25 3GM C15 O33 DOUB N N 26 3GM C16 C19 SING N N 27 3GM C17 C20 SING N N 28 3GM C17 O34 SING N N 29 3GM C18 C19 SING N N 30 3GM C18 C21 SING N N 31 3GM C19 N27 SING N N 32 3GM C20 C24 SING N N 33 3GM C20 O35 SING N N 34 3GM C22 C25 SING N N 35 3GM C23 C24 SING N N 36 3GM C25 C26 SING N N 37 3GM C26 N28 SING N N 38 3GM C1 H1 SING N N 39 3GM C2 H2 SING N N 40 3GM C3 H3 SING N N 41 3GM C4 H4 SING N N 42 3GM C5 H5 SING N N 43 3GM C6 H6 SING N N 44 3GM C16 H161 SING N N 45 3GM C16 H162 SING N N 46 3GM C18 H18 SING N N 47 3GM C21 H211 SING N N 48 3GM C21 H212 SING N N 49 3GM O31 H31 SING N N 50 3GM C22 H221 SING N N 51 3GM C22 H222 SING N N 52 3GM N27 H27 SING N N 53 3GM C23 H231 SING N N 54 3GM C23 H232 SING N N 55 3GM O30 H30 SING N N 56 3GM C19 H19 SING N N 57 3GM C17 H171 SING N N 58 3GM C17 H172 SING N N 59 3GM C20 H20 SING N N 60 3GM C24 H241 SING N N 61 3GM C24 H242 SING N N 62 3GM C25 H251 SING N N 63 3GM C25 H252 SING N N 64 3GM C26 H261 SING N N 65 3GM C26 H262 SING N N 66 3GM N28 H281 SING N N 67 3GM N28 H282 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3GM SMILES ACDLabs 12.01 "O=C(O)c2c(ccc1OC(COc12)CCC(=O)O)CC4c3ccccc3CC4NC(=O)CCCN" 3GM InChI InChI 1.03 "InChI=1S/C26H30N2O7/c27-11-3-6-22(29)28-20-13-15-4-1-2-5-18(15)19(20)12-16-7-9-21-25(24(16)26(32)33)34-14-17(35-21)8-10-23(30)31/h1-2,4-5,7,9,17,19-20H,3,6,8,10-14,27H2,(H,28,29)(H,30,31)(H,32,33)/t17-,19+,20-/m0/s1" 3GM InChIKey InChI 1.03 UEGSVADLZPXOAG-SXLOBPIMSA-N 3GM SMILES_CANONICAL CACTVS 3.385 "NCCCC(=O)N[C@H]1Cc2ccccc2[C@H]1Cc3ccc4O[C@@H](CCC(O)=O)COc4c3C(O)=O" 3GM SMILES CACTVS 3.385 "NCCCC(=O)N[CH]1Cc2ccccc2[CH]1Cc3ccc4O[CH](CCC(O)=O)COc4c3C(O)=O" 3GM SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)C[C@@H]([C@@H]2Cc3ccc4c(c3C(=O)O)OC[C@@H](O4)CCC(=O)O)NC(=O)CCCN" 3GM SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)CC(C2Cc3ccc4c(c3C(=O)O)OCC(O4)CCC(=O)O)NC(=O)CCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3GM "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-6-({(1R,2S)-2-[(4-aminobutanoyl)amino]-2,3-dihydro-1H-inden-1-yl}methyl)-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" 3GM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-6-[[(1R,2S)-2-(4-azanylbutanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3GM "Create component" 2013-11-13 EBI 3GM "Initial release" 2013-11-20 RCSB 3GM "Modify descriptor" 2014-09-05 RCSB #