data_3HC # _chem_comp.id 3HC _chem_comp.name "3-HYDROXYBUTANOYL-COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAC _chem_comp.formula "C25 H42 N7 O18 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-HYDROXYBUTYRYL-COENZYME A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-05-31 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 853.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3HC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1F12 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3HC N1A AN1 N 0 1 Y N N 30.286 34.211 40.550 4.912 1.421 -11.481 N1A 3HC 1 3HC C2A AC2 C 0 1 Y N N 29.022 34.036 41.166 3.919 2.283 -11.366 C2A 3HC 2 3HC N3A AN3 N 0 1 Y N N 29.012 34.147 42.578 2.956 2.138 -10.480 N3A 3HC 3 3HC C4A AC4 C 0 1 Y N N 30.201 34.380 43.324 2.945 1.095 -9.657 C4A 3HC 4 3HC C5A AC5 C 0 1 Y N N 31.452 34.504 42.696 3.984 0.151 -9.736 C5A 3HC 5 3HC C6A AC6 C 0 1 Y N N 31.481 34.439 41.286 4.989 0.350 -10.698 C6A 3HC 6 3HC N6A AN6 N 0 1 N N N 32.723 34.658 40.617 6.033 -0.548 -10.826 N6A 3HC 7 3HC N7A AN7 N 0 1 Y N N 32.454 34.743 43.644 3.739 -0.791 -8.795 N7A 3HC 8 3HC C8A AC8 C 0 1 Y N N 31.793 34.802 44.880 2.645 -0.491 -8.156 C8A 3HC 9 3HC N9A AN9 N 0 1 Y N N 30.407 34.600 44.705 2.120 0.665 -8.648 N9A 3HC 10 3HC C1B AC1* C 0 1 N N R 29.403 34.764 45.735 0.896 1.326 -8.189 C1B 3HC 11 3HC C2B AC2* C 0 1 N N R 28.329 33.648 45.796 -0.346 0.735 -8.902 C2B 3HC 12 3HC O2B AO2* O 0 1 N N N 27.255 33.673 44.849 -0.577 1.391 -10.151 O2B 3HC 13 3HC C3B AC3* C 0 1 N N S 27.923 33.571 47.277 -1.481 1.053 -7.893 C3B 3HC 14 3HC O3B AO3* O 0 1 N N N 26.680 34.097 47.764 -2.178 2.239 -8.281 O3B 3HC 15 3HC P3B AP3* P 0 1 N N N 26.091 33.403 49.061 -3.722 1.828 -8.479 P3B 3HC 16 3HC O7A AO7 O 0 1 N N N 26.063 31.928 48.985 -4.258 1.296 -7.206 O7A 3HC 17 3HC O8A AO8 O 0 1 N N N 26.848 33.779 50.278 -4.570 3.123 -8.919 O8A 3HC 18 3HC O9A AO9 O 0 1 N N N 24.717 33.933 49.188 -3.834 0.699 -9.621 O9A 3HC 19 3HC C4B AC4* C 0 1 N N R 29.129 34.177 48.004 -0.744 1.265 -6.556 C4B 3HC 20 3HC O4B AO4* O 0 1 N N N 29.921 34.941 47.072 0.654 1.037 -6.795 O4B 3HC 21 3HC C5B AC5* C 0 1 N N N 29.874 32.972 48.635 -1.262 0.272 -5.514 C5B 3HC 22 3HC O5B AO5* O 0 1 N N N 31.066 32.652 47.904 -0.568 0.471 -4.280 O5B 3HC 23 3HC P1A AP1 P 0 1 N N R 32.432 33.069 48.542 -1.160 -0.600 -3.235 P1A 3HC 24 3HC O1A AO1 O 0 1 N N N 32.836 32.059 49.530 -2.612 -0.372 -3.064 O1A 3HC 25 3HC O2A AO2 O 0 1 N N N 33.465 33.190 47.499 -0.913 -2.089 -3.796 O2A 3HC 26 3HC O3A AO3 O 0 1 N N N 32.143 34.442 49.251 -0.419 -0.432 -1.816 O3A 3HC 27 3HC P2A AP2 P 0 1 N N S 33.124 35.175 50.219 -1.057 -1.528 -0.825 P2A 3HC 28 3HC O4A AO4 O 0 1 N N N 32.370 35.724 51.359 -2.510 -1.286 -0.690 O4A 3HC 29 3HC O5A AO5 O 0 1 N N N 34.187 34.282 50.716 -0.812 -3.002 -1.426 O5A 3HC 30 3HC O6A AO6 O 0 1 N N N 33.786 36.327 49.395 -0.358 -1.416 0.621 O6A 3HC 31 3HC CBP PC11 C 0 1 N N N 34.122 37.997 47.634 -0.341 -2.355 2.847 CBP 3HC 32 3HC CCP PC12 C 0 1 N N N 33.251 36.833 48.163 -0.963 -2.409 1.450 CCP 3HC 33 3HC CDP PC13 C 0 1 N N N 33.200 38.922 46.812 -0.573 -0.971 3.456 CDP 3HC 34 3HC CEP PC14 C 0 1 N N N 35.213 37.430 46.698 1.162 -2.622 2.746 CEP 3HC 35 3HC CAP PC10 C 0 1 N N R 34.768 38.767 48.849 -0.989 -3.419 3.736 CAP 3HC 36 3HC OAP PO10 O 0 1 N N N 35.724 37.935 49.519 -0.873 -4.698 3.109 OAP 3HC 37 3HC C9P PC9 C 0 1 N N N 35.476 40.067 48.447 -0.293 -3.449 5.072 C9P 3HC 38 3HC O9P PO9 O 0 1 N N N 34.838 41.122 48.466 0.459 -4.360 5.343 O9P 3HC 39 3HC N8P PN8 N 0 1 N N N 36.882 40.081 48.463 -0.509 -2.464 5.966 N8P 3HC 40 3HC C7P PC7 C 0 1 N N N 37.603 41.238 48.167 0.182 -2.482 7.258 C7P 3HC 41 3HC C6P PC6 C 0 1 N N N 38.083 41.145 46.704 -0.235 -1.260 8.078 C6P 3HC 42 3HC C5P PC5 C 0 1 N N N 38.296 42.543 46.128 0.475 -1.280 9.406 C5P 3HC 43 3HC O5P PO5 O 0 1 N N N 38.762 43.435 46.849 1.240 -2.182 9.671 O5P 3HC 44 3HC N4P PN4 N 0 1 N N N 38.221 42.715 44.731 0.260 -0.294 10.300 N4P 3HC 45 3HC C3P PC3 C 0 1 N N N 38.703 43.876 44.120 0.951 -0.313 11.592 C3P 3HC 46 3HC C2P PC2 C 0 1 N N N 40.230 43.780 43.998 0.533 0.908 12.412 C2P 3HC 47 3HC S1P PS1 S 0 1 N N N 40.794 45.110 42.908 1.387 0.885 14.007 S1P 3HC 48 3HC C1 C1 C 0 1 N N N 40.197 44.736 41.220 0.757 2.317 14.702 C1 3HC 49 3HC O1 O1 O 0 1 N N N 39.616 43.673 40.990 -0.037 2.994 14.083 O1 3HC 50 3HC C2 C2 C 0 1 N N N 40.511 45.700 40.071 1.190 2.738 16.083 C2 3HC 51 3HC C3 C3 C 0 1 N N S 41.830 45.568 39.290 0.484 4.042 16.464 C3 3HC 52 3HC O3 O3 O 0 1 N N N 42.065 46.373 38.403 -0.929 3.840 16.449 O3 3HC 53 3HC C4 C4 C 0 1 N N N 42.977 44.673 39.832 0.924 4.469 17.866 C4 3HC 54 3HC H2A AH2 H 0 1 N N N 28.107 33.827 40.585 3.896 3.140 -12.023 H2A 3HC 55 3HC H61A AH61 H 0 0 N N N 33.580 34.821 41.145 6.721 -0.400 -11.494 H61A 3HC 56 3HC H62A AH62 H 0 0 N N N 32.599 35.431 39.964 6.078 -1.326 -10.249 H62A 3HC 57 3HC H8A AH8 H 0 1 N N N 32.290 34.981 45.848 2.217 -1.074 -7.353 H8A 3HC 58 3HC H1B AH1* H 0 1 N N N 28.923 35.712 45.397 0.957 2.402 -8.353 H1B 3HC 59 3HC H2B AH2* H 0 1 N N N 28.775 32.693 45.431 -0.239 -0.339 -9.043 H2B 3HC 60 3HC HO2A AHO2 H 0 0 N N N 26.596 32.989 44.886 0.202 1.231 -10.698 HO2A 3HC 61 3HC H3B AH3* H 0 1 N N N 27.679 32.500 47.474 -2.172 0.213 -7.818 H3B 3HC 62 3HC HOA8 8HOA H 0 0 N N N 26.494 33.362 51.055 -5.486 2.834 -9.026 HOA8 3HC 63 3HC HOA9 9HOA H 0 0 N N N 24.363 33.516 49.965 -3.475 1.085 -10.432 HOA9 3HC 64 3HC H4B AH4* H 0 1 N N N 28.855 34.900 48.807 -0.899 2.285 -6.205 H4B 3HC 65 3HC H51A AH51 H 0 0 N N N 30.091 33.146 49.714 -1.093 -0.745 -5.866 H51A 3HC 66 3HC H52A AH52 H 0 0 N N N 29.205 32.085 48.734 -2.329 0.430 -5.360 H52A 3HC 67 3HC HOA2 2HOA H 0 0 N N N 34.294 33.443 47.886 0.042 -2.196 -3.893 HOA2 3HC 68 3HC HOA5 5HOA H 0 0 N N N 34.784 34.728 51.305 0.145 -3.119 -1.497 HOA5 3HC 69 3HC H121 1H12 H 0 0 N N N 33.128 36.027 47.402 -0.798 -3.395 1.016 H121 3HC 70 3HC H122 2H12 H 0 0 N N N 32.180 37.128 48.265 -2.034 -2.219 1.522 H122 3HC 71 3HC H131 1H13 H 0 0 N N N 33.827 39.760 46.430 -1.637 -0.834 3.650 H131 3HC 72 3HC H132 2H13 H 0 0 N N N 32.651 38.384 46.003 -0.020 -0.888 4.392 H132 3HC 73 3HC H133 3H13 H 0 0 N N N 32.308 39.269 47.384 -0.228 -0.206 2.761 H133 3HC 74 3HC H141 1H14 H 0 0 N N N 35.840 38.268 46.316 1.327 -3.608 2.312 H141 3HC 75 3HC H142 2H14 H 0 0 N N N 35.821 36.635 47.189 1.623 -1.865 2.113 H142 3HC 76 3HC H143 3H14 H 0 0 N N N 34.784 36.813 45.873 1.605 -2.584 3.741 H143 3HC 77 3HC H10 H10 H 0 1 N N N 33.916 39.029 49.518 -2.042 -3.179 3.880 H10 3HC 78 3HC HO1 HO1 H 0 1 N N N 36.113 38.398 50.251 0.072 -4.871 3.001 HO1 3HC 79 3HC HN8 HN8 H 0 1 N N N 37.392 39.229 48.695 -1.121 -1.742 5.754 HN8 3HC 80 3HC H71 1H7 H 0 1 N N N 37.024 42.169 48.371 1.259 -2.458 7.093 H71 3HC 81 3HC H72 2H7 H 0 1 N N N 38.438 41.419 48.883 -0.082 -3.391 7.798 H72 3HC 82 3HC H61 1H6 H 0 1 N N N 38.994 40.510 46.604 -1.313 -1.284 8.242 H61 3HC 83 3HC H62 2H6 H 0 1 N N N 37.390 40.537 46.076 0.029 -0.352 7.537 H62 3HC 84 3HC HN4 HN4 H 0 1 N N N 37.809 41.984 44.150 -0.352 0.427 10.088 HN4 3HC 85 3HC H31 1H3 H 0 1 N N N 38.210 44.075 43.139 2.028 -0.289 11.427 H31 3HC 86 3HC H32 2H3 H 0 1 N N N 38.376 44.801 44.649 0.686 -1.221 12.132 H32 3HC 87 3HC H21 1H2 H 0 1 N N N 40.742 43.789 44.988 -0.544 0.885 12.576 H21 3HC 88 3HC H22 2H2 H 0 1 N N N 40.572 42.773 43.661 0.798 1.817 11.871 H22 3HC 89 3HC HC21 1HC2 H 0 0 N N N 39.666 45.666 39.343 2.269 2.892 16.095 HC21 3HC 90 3HC HC22 2HC2 H 0 0 N N N 40.433 46.743 40.456 0.926 1.960 16.799 HC22 3HC 91 3HC HC31 1HC3 H 0 0 N N N 41.464 44.733 38.647 0.748 4.820 15.747 HC31 3HC 92 3HC HO31 1HO3 H 0 0 N N N 42.879 46.291 37.920 -1.119 3.145 17.094 HO31 3HC 93 3HC HC41 1HC4 H 0 0 N N N 43.932 44.577 39.266 0.421 5.397 18.137 HC41 3HC 94 3HC HC42 2HC4 H 0 0 N N N 43.216 45.000 40.870 0.660 3.691 18.582 HC42 3HC 95 3HC HC43 3HC4 H 0 0 N N N 42.569 43.649 40.007 2.003 4.623 17.877 HC43 3HC 96 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3HC N1A C2A SING Y N 1 3HC N1A C6A DOUB Y N 2 3HC C2A N3A DOUB Y N 3 3HC C2A H2A SING N N 4 3HC N3A C4A SING Y N 5 3HC C4A C5A DOUB Y N 6 3HC C4A N9A SING Y N 7 3HC C5A C6A SING Y N 8 3HC C5A N7A SING Y N 9 3HC C6A N6A SING N N 10 3HC N6A H61A SING N N 11 3HC N6A H62A SING N N 12 3HC N7A C8A DOUB Y N 13 3HC C8A N9A SING Y N 14 3HC C8A H8A SING N N 15 3HC N9A C1B SING N N 16 3HC C1B C2B SING N N 17 3HC C1B O4B SING N N 18 3HC C1B H1B SING N N 19 3HC C2B O2B SING N N 20 3HC C2B C3B SING N N 21 3HC C2B H2B SING N N 22 3HC O2B HO2A SING N N 23 3HC C3B O3B SING N N 24 3HC C3B C4B SING N N 25 3HC C3B H3B SING N N 26 3HC O3B P3B SING N N 27 3HC P3B O7A DOUB N N 28 3HC P3B O8A SING N N 29 3HC P3B O9A SING N N 30 3HC O8A HOA8 SING N N 31 3HC O9A HOA9 SING N N 32 3HC C4B O4B SING N N 33 3HC C4B C5B SING N N 34 3HC C4B H4B SING N N 35 3HC C5B O5B SING N N 36 3HC C5B H51A SING N N 37 3HC C5B H52A SING N N 38 3HC O5B P1A SING N N 39 3HC P1A O1A DOUB N N 40 3HC P1A O2A SING N N 41 3HC P1A O3A SING N N 42 3HC O2A HOA2 SING N N 43 3HC O3A P2A SING N N 44 3HC P2A O4A DOUB N N 45 3HC P2A O5A SING N N 46 3HC P2A O6A SING N N 47 3HC O5A HOA5 SING N N 48 3HC O6A CCP SING N N 49 3HC CBP CCP SING N N 50 3HC CBP CDP SING N N 51 3HC CBP CEP SING N N 52 3HC CBP CAP SING N N 53 3HC CCP H121 SING N N 54 3HC CCP H122 SING N N 55 3HC CDP H131 SING N N 56 3HC CDP H132 SING N N 57 3HC CDP H133 SING N N 58 3HC CEP H141 SING N N 59 3HC CEP H142 SING N N 60 3HC CEP H143 SING N N 61 3HC CAP OAP SING N N 62 3HC CAP C9P SING N N 63 3HC CAP H10 SING N N 64 3HC OAP HO1 SING N N 65 3HC C9P O9P DOUB N N 66 3HC C9P N8P SING N N 67 3HC N8P C7P SING N N 68 3HC N8P HN8 SING N N 69 3HC C7P C6P SING N N 70 3HC C7P H71 SING N N 71 3HC C7P H72 SING N N 72 3HC C6P C5P SING N N 73 3HC C6P H61 SING N N 74 3HC C6P H62 SING N N 75 3HC C5P O5P DOUB N N 76 3HC C5P N4P SING N N 77 3HC N4P C3P SING N N 78 3HC N4P HN4 SING N N 79 3HC C3P C2P SING N N 80 3HC C3P H31 SING N N 81 3HC C3P H32 SING N N 82 3HC C2P S1P SING N N 83 3HC C2P H21 SING N N 84 3HC C2P H22 SING N N 85 3HC S1P C1 SING N N 86 3HC C1 O1 DOUB N N 87 3HC C1 C2 SING N N 88 3HC C2 C3 SING N N 89 3HC C2 HC21 SING N N 90 3HC C2 HC22 SING N N 91 3HC C3 O3 SING N N 92 3HC C3 C4 SING N N 93 3HC C3 HC31 SING N N 94 3HC O3 HO31 SING N N 95 3HC C4 HC41 SING N N 96 3HC C4 HC42 SING N N 97 3HC C4 HC43 SING N N 98 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3HC SMILES ACDLabs 10.04 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)CC(O)C" 3HC SMILES_CANONICAL CACTVS 3.341 "C[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 3HC SMILES CACTVS 3.341 "C[CH](O)CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 3HC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)O" 3HC SMILES "OpenEye OEToolkits" 1.5.0 "CC(CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)O" 3HC InChI InChI 1.03 "InChI=1S/C25H42N7O18P3S/c1-13(33)8-16(35)54-7-6-27-15(34)4-5-28-23(38)20(37)25(2,3)10-47-53(44,45)50-52(42,43)46-9-14-19(49-51(39,40)41)18(36)24(48-14)32-12-31-17-21(26)29-11-30-22(17)32/h11-14,18-20,24,33,36-37H,4-10H2,1-3H3,(H,27,34)(H,28,38)(H,42,43)(H,44,45)(H2,26,29,30)(H2,39,40,41)/t13-,14+,18+,19+,20-,24+/m0/s1" 3HC InChIKey InChI 1.03 QHHKKMYHDBRONY-VKBDFPRVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3HC "SYSTEMATIC NAME" ACDLabs 10.04 "S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-9,13,15-trihydroxy-10,10-dimethyl-13,15-dioxido-4,8-dioxo-12,14,16-trioxa-3,7-diaza-13,15-diphosphaheptadec-1-yl} (3S)-3-hydroxybutanethioate (non-preferred name)" 3HC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethyl] 3-hydroxybutanethioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3HC "Create component" 2000-05-31 RCSB 3HC "Modify descriptor" 2011-06-04 RCSB 3HC "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3HC _pdbx_chem_comp_synonyms.name "3-HYDROXYBUTYRYL-COENZYME A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##