data_3KD # _chem_comp.id 3KD _chem_comp.name "(1S,2S,12bS,12cS)-2,4,5,7,12b,12c-hexahydro-1H-[1,3]dioxolo[4,5-j]pyrrolo[3,2,1-de]phenanthridine-1,2-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-03 _chem_comp.pdbx_modified_date 2014-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 287.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3KD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4U4U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3KD C1 C1 C 0 1 N N N 29.423 6.823 58.904 2.534 -2.792 0.052 C1 3KD 1 3KD C2 C2 C 0 1 N N N 29.063 7.091 61.383 0.069 -2.408 -0.022 C2 3KD 2 3KD C3 C3 C 0 1 Y N N 29.163 6.313 62.671 -0.935 -1.273 0.034 C3 3KD 3 3KD C4 C4 C 0 1 Y N N 28.536 6.774 63.827 -2.277 -1.626 -0.113 C4 3KD 4 3KD C5 C5 C 0 1 Y N N 28.762 6.091 65.005 -3.226 -0.617 -0.070 C5 3KD 5 3KD C6 C6 C 0 1 Y N N 29.592 5.002 65.048 -2.849 0.722 0.115 C6 3KD 6 3KD C7 C7 C 0 1 Y N N 30.205 4.517 63.918 -1.516 1.070 0.262 C7 3KD 7 3KD C8 C8 C 0 1 Y N N 29.969 5.166 62.716 -0.571 0.051 0.218 C8 3KD 8 3KD C9 C9 C 0 1 N N S 30.537 4.584 61.481 0.881 0.415 0.380 C9 3KD 9 3KD C10 C10 C 0 1 N N S 30.657 5.797 60.565 1.666 -0.696 -0.334 C10 3KD 10 3KD C11 C11 C 0 1 N N N 31.162 5.226 59.278 3.140 -0.437 -0.092 C11 3KD 11 3KD C12 C12 C 0 1 N N N 32.008 4.196 59.198 3.627 0.761 -0.013 C12 3KD 12 3KD C13 C13 C 0 1 N N S 32.445 3.479 60.415 2.774 1.992 -0.111 C13 3KD 13 3KD C14 C14 C 0 1 N N S 31.935 4.081 61.704 1.282 1.727 -0.272 C14 3KD 14 3KD C15 C15 C 0 1 N N N 28.841 5.372 67.121 -5.061 0.581 0.322 C15 3KD 15 3KD O1 O1 O 0 1 N N N 31.928 2.160 60.334 2.968 2.771 1.071 O1 3KD 16 3KD N N1 N 0 1 N N N 29.283 6.215 60.227 1.380 -1.947 0.422 N 3KD 17 3KD C C16 C 0 1 N N N 30.417 5.917 58.174 3.741 -1.811 0.078 C 3KD 18 3KD O O2 O 0 1 N N N 32.655 5.257 61.983 0.964 1.673 -1.664 O 3KD 19 3KD O2 O3 O 0 1 N N N 29.763 4.593 66.352 -3.961 1.492 0.116 O2 3KD 20 3KD O3 O4 O 0 1 N N N 28.247 6.342 66.262 -4.572 -0.678 -0.185 O3 3KD 21 3KD H1 H1 H 0 1 N N N 29.816 7.847 58.986 2.673 -3.589 0.783 H1 3KD 22 3KD H2 H2 H 0 1 N N N 28.456 6.842 58.380 2.398 -3.210 -0.945 H2 3KD 23 3KD H3 H3 H 0 1 N N N 29.823 7.887 61.382 -0.266 -3.218 0.626 H3 3KD 24 3KD H4 H4 H 0 1 N N N 28.062 7.540 61.310 0.143 -2.774 -1.046 H4 3KD 25 3KD H5 H5 H 0 1 N N N 27.892 7.641 63.802 -2.569 -2.656 -0.256 H5 3KD 26 3KD H6 H6 H 0 1 N N N 30.853 3.654 63.965 -1.220 2.099 0.404 H6 3KD 27 3KD H7 H7 H 0 1 N N N 29.886 3.811 61.046 1.137 0.440 1.440 H7 3KD 28 3KD H8 H8 H 0 1 N N N 31.287 6.599 60.977 1.411 -0.775 -1.391 H8 3KD 29 3KD H9 H9 H 0 1 N N N 32.378 3.883 58.233 4.691 0.879 0.131 H9 3KD 30 3KD H10 H10 H 0 1 N N N 33.544 3.453 60.446 3.114 2.579 -0.964 H10 3KD 31 3KD H11 H11 H 0 1 N N N 31.972 3.351 62.526 0.723 2.541 0.189 H11 3KD 32 3KD H12 H12 H 0 1 N N N 29.374 5.877 67.940 -5.296 0.500 1.383 H12 3KD 33 3KD H13 H13 H 0 1 N N N 28.061 4.719 67.539 -5.937 0.907 -0.238 H13 3KD 34 3KD H14 H14 H 0 1 N N N 32.191 1.669 61.103 3.882 3.056 1.209 H14 3KD 35 3KD H16 H16 H 0 1 N N N 29.889 5.187 57.543 4.264 -1.879 1.031 H16 3KD 36 3KD H17 H17 H 0 1 N N N 31.103 6.511 57.552 4.423 -2.029 -0.744 H17 3KD 37 3KD H18 H18 H 0 1 N N N 32.337 5.639 62.793 1.192 2.477 -2.151 H18 3KD 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3KD C C1 SING N N 1 3KD C C11 SING N N 2 3KD C1 N SING N N 3 3KD C12 C11 DOUB N N 4 3KD C12 C13 SING N N 5 3KD C11 C10 SING N N 6 3KD N C10 SING N N 7 3KD N C2 SING N N 8 3KD O1 C13 SING N N 9 3KD C13 C14 SING N N 10 3KD C10 C9 SING N N 11 3KD C2 C3 SING N N 12 3KD C9 C14 SING N N 13 3KD C9 C8 SING N N 14 3KD C14 O SING N N 15 3KD C3 C8 SING Y N 16 3KD C3 C4 DOUB Y N 17 3KD C8 C7 DOUB Y N 18 3KD C4 C5 SING Y N 19 3KD C7 C6 SING Y N 20 3KD C5 C6 DOUB Y N 21 3KD C5 O3 SING N N 22 3KD C6 O2 SING N N 23 3KD O3 C15 SING N N 24 3KD O2 C15 SING N N 25 3KD C1 H1 SING N N 26 3KD C1 H2 SING N N 27 3KD C2 H3 SING N N 28 3KD C2 H4 SING N N 29 3KD C4 H5 SING N N 30 3KD C7 H6 SING N N 31 3KD C9 H7 SING N N 32 3KD C10 H8 SING N N 33 3KD C12 H9 SING N N 34 3KD C13 H10 SING N N 35 3KD C14 H11 SING N N 36 3KD C15 H12 SING N N 37 3KD C15 H13 SING N N 38 3KD O1 H14 SING N N 39 3KD C H16 SING N N 40 3KD C H17 SING N N 41 3KD O H18 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3KD SMILES ACDLabs 12.01 "O1c2c(OC1)cc3c(c2)C5C(O)C(O)C=C4C5N(C3)CC4" 3KD InChI InChI 1.03 "InChI=1S/C16H17NO4/c18-11-3-8-1-2-17-6-9-4-12-13(21-7-20-12)5-10(9)14(15(8)17)16(11)19/h3-5,11,14-16,18-19H,1-2,6-7H2/t11-,14-,15+,16+/m0/s1" 3KD InChIKey InChI 1.03 XGVJWXAYKUHDOO-DANNLKNASA-N 3KD SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C=C2CCN3Cc4cc5OCOc5cc4[C@H]([C@@H]1O)[C@@H]23" 3KD SMILES CACTVS 3.385 "O[CH]1C=C2CCN3Cc4cc5OCOc5cc4[CH]([CH]1O)[CH]23" 3KD SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c2c(cc3c1OCO3)[C@@H]4[C@@H]([C@H](C=C5[C@H]4N(C2)CC5)O)O" 3KD SMILES "OpenEye OEToolkits" 1.9.2 "c1c2c(cc3c1OCO3)C4C(C(C=C5C4N(C2)CC5)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3KD "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,12bS,12cS)-2,4,5,7,12b,12c-hexahydro-1H-[1,3]dioxolo[4,5-j]pyrrolo[3,2,1-de]phenanthridine-1,2-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3KD "Create component" 2014-09-03 EBI 3KD "Modify descriptor" 2014-09-05 RCSB 3KD "Initial release" 2014-10-22 RCSB #