data_3KK # _chem_comp.id 3KK _chem_comp.name "S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxy-2-methylpropanethioate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N7 O18 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-Hydroxyisobutyryl-Coenzyme A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-04 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 853.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3KK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4R3U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3KK C4 C4 C 0 1 N N N 32.112 2.805 65.947 16.003 2.738 0.457 C4 3KK 1 3KK C3 C3 C 0 1 N N N 33.169 3.210 64.923 15.018 3.419 -0.496 C3 3KK 2 3KK C2 C2 C 0 1 N N N 32.500 3.669 63.631 14.575 4.757 0.098 C2 3KK 3 3KK O3 O3 O 0 1 N N N 33.912 4.304 65.434 15.654 3.644 -1.756 O3 3KK 4 3KK C1 C1 C 0 1 N N N 34.132 2.037 64.698 13.815 2.533 -0.692 C1 3KK 5 3KK O1 O1 O 0 1 N N N 33.871 1.106 63.933 13.529 2.134 -1.802 O1 3KK 6 3KK S1P S1P S 0 1 N N N 35.622 2.172 65.636 12.851 2.090 0.651 S1P 3KK 7 3KK C2P C2P C 0 1 N N N 36.565 0.702 65.134 11.610 1.065 -0.177 C2P 3KK 8 3KK C3P C3P C 0 1 N N N 37.984 0.800 65.632 10.609 0.541 0.856 C3P 3KK 9 3KK N4P N4P N 0 1 N N N 38.666 -0.441 65.295 9.605 -0.288 0.186 N4P 3KK 10 3KK C5P C5P C 0 1 N N N 39.739 -0.871 65.965 8.616 -0.860 0.901 C5P 3KK 11 3KK O5P O5P O 0 1 N N N 40.261 -0.266 66.905 8.559 -0.688 2.101 O5P 3KK 12 3KK C6P C6P C 0 1 N N N 40.270 -2.210 65.444 7.583 -1.713 0.212 C6P 3KK 13 3KK C7P C7P C 0 1 N N N 41.576 -2.616 66.113 6.583 -2.237 1.245 C7P 3KK 14 3KK N8P N8P N 0 1 N N N 41.994 -3.947 65.653 5.578 -3.066 0.574 N8P 3KK 15 3KK C9P C9P C 0 1 N N N 43.207 -4.438 65.952 4.590 -3.638 1.290 C9P 3KK 16 3KK O9P O9P O 0 1 N N N 44.042 -3.801 66.597 4.584 -3.543 2.499 O9P 3KK 17 3KK CAP CAP C 0 1 N N R 43.551 -5.828 65.340 3.492 -4.394 0.588 CAP 3KK 18 3KK OAP OAP O 0 1 N N N 43.009 -5.987 64.012 3.854 -4.601 -0.779 OAP 3KK 19 3KK CBP CBP C 0 1 N N N 43.351 -7.072 66.270 2.193 -3.588 0.655 CBP 3KK 20 3KK CDP CDP C 0 1 N N N 43.954 -8.318 65.607 1.726 -3.494 2.109 CDP 3KK 21 3KK CEP CEP C 0 1 N N N 41.866 -7.349 66.532 2.438 -2.181 0.106 CEP 3KK 22 3KK CCP CCP C 0 1 N N N 44.084 -6.894 67.615 1.117 -4.283 -0.182 CCP 3KK 23 3KK O6A O6A O 0 1 N N N 45.455 -6.548 67.352 -0.095 -3.530 -0.119 O6A 3KK 24 3KK P2A P2A P 0 1 N N N 46.434 -5.880 68.403 -1.441 -3.969 -0.885 P2A 3KK 25 3KK O4A O4A O 0 1 N N N 45.732 -4.816 69.136 -1.981 -5.356 -0.270 O4A 3KK 26 3KK O5A O5A O 0 1 N N N 47.684 -5.541 67.681 -1.153 -4.148 -2.326 O5A 3KK 27 3KK O3A O3A O 0 1 N N N 46.659 -7.124 69.425 -2.562 -2.828 -0.700 O3A 3KK 28 3KK P1A P1A P 0 1 N N N 47.427 -8.541 69.113 -3.959 -2.504 -1.431 P1A 3KK 29 3KK O1A O1A O 0 1 N N N 47.555 -8.811 67.657 -4.733 -3.755 -1.593 O1A 3KK 30 3KK O2A O2A O 0 1 N N N 46.803 -9.570 69.962 -3.671 -1.860 -2.878 O2A 3KK 31 3KK O5B O5B O 0 1 N N N 48.860 -8.139 69.775 -4.802 -1.463 -0.538 O5B 3KK 32 3KK C5B C5B C 0 1 N N N 49.953 -7.560 69.029 -6.133 -1.057 -0.865 C5B 3KK 33 3KK C4B C4B C 0 1 N N R 51.170 -8.501 69.061 -6.637 -0.066 0.187 C4B 3KK 34 3KK O4B O4B O 0 1 N N N 51.432 -8.999 70.408 -5.876 1.151 0.115 O4B 3KK 35 3KK C3B C3B C 0 1 N N S 50.939 -9.723 68.177 -8.108 0.295 -0.096 C3B 3KK 36 3KK O3B O3B O 0 1 N N N 52.193 -10.062 67.534 -8.934 -0.069 1.012 O3B 3KK 37 3KK P3B P3B P 0 1 N N N 52.473 -9.837 65.960 -10.152 -1.115 0.890 P3B 3KK 38 3KK O8A O8A O 0 1 N N N 51.434 -10.679 65.325 -11.079 -0.672 -0.175 O8A 3KK 39 3KK O7A O7A O 0 1 N N N 52.319 -8.375 65.799 -9.573 -2.572 0.526 O7A 3KK 40 3KK O9A O9A O 0 1 N N N 53.865 -10.332 65.824 -10.940 -1.186 2.292 O9A 3KK 41 3KK C2B C2B C 0 1 N N R 50.533 -10.802 69.165 -8.093 1.833 -0.278 C2B 3KK 42 3KK O2B O2B O 0 1 N N N 50.848 -12.113 68.682 -9.223 2.433 0.358 O2B 3KK 43 3KK C1B C1B C 0 1 N N R 51.357 -10.441 70.386 -6.778 2.232 0.439 C1B 3KK 44 3KK N9A N9A N 0 1 Y N N 50.733 -10.914 71.658 -6.270 3.502 -0.084 N9A 3KK 45 3KK C8A C8A C 0 1 Y N N 49.579 -10.545 72.209 -5.339 3.655 -1.069 C8A 3KK 46 3KK N7A N7A N 0 1 Y N N 49.419 -11.230 73.338 -5.123 4.920 -1.283 N7A 3KK 47 3KK C5A C5A C 0 1 Y N N 50.488 -12.015 73.507 -5.898 5.658 -0.453 C5A 3KK 48 3KK C4A C4A C 0 1 Y N N 51.311 -11.809 72.459 -6.648 4.757 0.323 C4A 3KK 49 3KK N3A N3A N 0 1 Y N N 52.493 -12.469 72.348 -7.501 5.234 1.223 N3A 3KK 50 3KK C2A C2A C 0 1 Y N N 52.898 -13.385 73.347 -7.647 6.532 1.387 C2A 3KK 51 3KK N1A N1A N 0 1 Y N N 52.000 -13.564 74.435 -6.967 7.417 0.680 N1A 3KK 52 3KK C6A C6A C 0 1 Y N N 50.830 -12.892 74.475 -6.086 7.034 -0.238 C6A 3KK 53 3KK N6A N6A N 0 1 N N N 49.978 -13.055 75.487 -5.380 7.968 -0.975 N6A 3KK 54 3KK H1 H1 H 0 1 N N N 32.605 2.476 66.874 16.873 3.379 0.598 H1 3KK 55 3KK H2 H2 H 0 1 N N N 31.462 3.666 66.163 15.518 2.566 1.418 H2 3KK 56 3KK H3 H3 H 0 1 N N N 31.506 1.981 65.542 16.319 1.785 0.033 H3 3KK 57 3KK H4 H4 H 0 1 N N N 31.822 4.508 63.846 13.874 5.242 -0.581 H4 3KK 58 3KK H5 H5 H 0 1 N N N 33.269 3.994 62.915 14.091 4.585 1.059 H5 3KK 59 3KK H6 H6 H 0 1 N N N 31.926 2.836 63.200 15.446 5.398 0.240 H6 3KK 60 3KK H7 H7 H 0 1 N N N 34.341 4.046 66.241 16.438 4.208 -1.706 H7 3KK 61 3KK H8 H8 H 0 1 N N N 36.569 0.630 64.036 11.084 1.663 -0.922 H8 3KK 62 3KK H9 H9 H 0 1 N N N 36.092 -0.196 65.558 12.101 0.224 -0.666 H9 3KK 63 3KK H10 H10 H 0 1 N N N 38.491 1.648 65.149 11.135 -0.056 1.601 H10 3KK 64 3KK H11 H11 H 0 1 N N N 37.988 0.944 66.723 10.118 1.383 1.345 H11 3KK 65 3KK H12 H12 H 0 1 N N N 38.319 -0.991 64.535 9.651 -0.426 -0.774 H12 3KK 66 3KK H13 H13 H 0 1 N N N 39.517 -2.988 65.638 7.057 -1.115 -0.533 H13 3KK 67 3KK H14 H14 H 0 1 N N N 40.439 -2.125 64.360 8.074 -2.554 -0.277 H14 3KK 68 3KK H15 H15 H 0 1 N N N 42.356 -1.883 65.860 7.109 -2.834 1.989 H15 3KK 69 3KK H16 H16 H 0 1 N N N 41.433 -2.638 67.204 6.092 -1.395 1.734 H16 3KK 70 3KK H17 H17 H 0 1 N N N 41.363 -4.498 65.107 5.624 -3.204 -0.385 H17 3KK 71 3KK H18 H18 H 0 1 N N N 44.641 -5.786 65.195 3.346 -5.359 1.075 H18 3KK 72 3KK H19 H19 H 0 1 N N N 43.240 -6.845 63.676 4.000 -3.784 -1.275 H19 3KK 73 3KK H20 H20 H 0 1 N N N 43.811 -9.189 66.264 2.457 -2.931 2.690 H20 3KK 74 3KK H21 H21 H 0 1 N N N 43.454 -8.499 64.644 0.762 -2.987 2.149 H21 3KK 75 3KK H22 H22 H 0 1 N N N 45.029 -8.159 65.438 1.627 -4.497 2.525 H22 3KK 76 3KK H23 H23 H 0 1 N N N 41.766 -8.227 67.187 2.770 -2.248 -0.930 H23 3KK 77 3KK H24 H24 H 0 1 N N N 41.410 -6.474 67.020 1.512 -1.607 0.154 H24 3KK 78 3KK H25 H25 H 0 1 N N N 41.355 -7.544 65.577 3.204 -1.686 0.703 H25 3KK 79 3KK H26 H26 H 0 1 N N N 43.604 -6.091 68.194 1.450 -4.350 -1.218 H26 3KK 80 3KK H27 H27 H 0 1 N N N 44.043 -7.833 68.186 0.943 -5.285 0.209 H27 3KK 81 3KK H28 H28 H 0 1 N N N 46.207 -3.999 69.041 -2.191 -5.312 0.673 H28 3KK 82 3KK H29 H29 H 0 1 N N N 46.552 -10.313 69.426 -3.167 -1.035 -2.848 H29 3KK 83 3KK H30 H30 H 0 1 N N N 50.228 -6.594 69.477 -6.138 -0.580 -1.845 H30 3KK 84 3KK H31 H31 H 0 1 N N N 49.640 -7.405 67.986 -6.785 -1.930 -0.882 H31 3KK 85 3KK H32 H32 H 0 1 N N N 52.049 -7.954 68.689 -6.544 -0.502 1.181 H32 3KK 86 3KK H33 H33 H 0 1 N N N 50.138 -9.534 67.447 -8.452 -0.193 -1.007 H33 3KK 87 3KK H34 H34 H 0 1 N N N 51.539 -8.193 65.288 -8.957 -2.926 1.182 H34 3KK 88 3KK H35 H35 H 0 1 N N N 53.866 -11.144 65.331 -11.688 -1.798 2.292 H35 3KK 89 3KK H36 H36 H 0 1 N N N 49.461 -10.712 69.397 -8.056 2.099 -1.334 H36 3KK 90 3KK H37 H37 H 0 1 N N N 50.581 -12.760 69.324 -9.258 3.395 0.272 H37 3KK 91 3KK H38 H38 H 0 1 N N N 52.363 -10.874 70.286 -6.931 2.293 1.516 H38 3KK 92 3KK H39 H39 H 0 1 N N N 48.891 -9.815 71.808 -4.853 2.845 -1.593 H39 3KK 93 3KK H40 H40 H 0 1 N N N 53.835 -13.918 73.287 -8.349 6.887 2.127 H40 3KK 94 3KK H41 H41 H 0 1 N N N 50.356 -13.713 76.139 -4.747 7.676 -1.650 H41 3KK 95 3KK H42 H42 H 0 1 N N N 49.833 -12.178 75.945 -5.519 8.915 -0.818 H42 3KK 96 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3KK C2 C3 SING N N 1 3KK O1 C1 DOUB N N 2 3KK OAP CAP SING N N 3 3KK C1 C3 SING N N 4 3KK C1 S1P SING N N 5 3KK C3 O3 SING N N 6 3KK C3 C4 SING N N 7 3KK C2P C3P SING N N 8 3KK C2P S1P SING N N 9 3KK N4P C3P SING N N 10 3KK N4P C5P SING N N 11 3KK O8A P3B DOUB N N 12 3KK CAP C9P SING N N 13 3KK CAP CBP SING N N 14 3KK C6P C5P SING N N 15 3KK C6P C7P SING N N 16 3KK CDP CBP SING N N 17 3KK N8P C9P SING N N 18 3KK N8P C7P SING N N 19 3KK O7A P3B SING N N 20 3KK O9A P3B SING N N 21 3KK C9P O9P DOUB N N 22 3KK P3B O3B SING N N 23 3KK C5P O5P DOUB N N 24 3KK CBP CEP SING N N 25 3KK CBP CCP SING N N 26 3KK O6A CCP SING N N 27 3KK O6A P2A SING N N 28 3KK O3B C3B SING N N 29 3KK O1A P1A DOUB N N 30 3KK O5A P2A DOUB N N 31 3KK C3B C4B SING N N 32 3KK C3B C2B SING N N 33 3KK P2A O4A SING N N 34 3KK P2A O3A SING N N 35 3KK O2B C2B SING N N 36 3KK C5B C4B SING N N 37 3KK C5B O5B SING N N 38 3KK C4B O4B SING N N 39 3KK P1A O3A SING N N 40 3KK P1A O5B SING N N 41 3KK P1A O2A SING N N 42 3KK C2B C1B SING N N 43 3KK C1B O4B SING N N 44 3KK C1B N9A SING N N 45 3KK N9A C8A SING Y N 46 3KK N9A C4A SING Y N 47 3KK C8A N7A DOUB Y N 48 3KK N3A C4A DOUB Y N 49 3KK N3A C2A SING Y N 50 3KK C4A C5A SING Y N 51 3KK N7A C5A SING Y N 52 3KK C2A N1A DOUB Y N 53 3KK C5A C6A DOUB Y N 54 3KK N1A C6A SING Y N 55 3KK C6A N6A SING N N 56 3KK C4 H1 SING N N 57 3KK C4 H2 SING N N 58 3KK C4 H3 SING N N 59 3KK C2 H4 SING N N 60 3KK C2 H5 SING N N 61 3KK C2 H6 SING N N 62 3KK O3 H7 SING N N 63 3KK C2P H8 SING N N 64 3KK C2P H9 SING N N 65 3KK C3P H10 SING N N 66 3KK C3P H11 SING N N 67 3KK N4P H12 SING N N 68 3KK C6P H13 SING N N 69 3KK C6P H14 SING N N 70 3KK C7P H15 SING N N 71 3KK C7P H16 SING N N 72 3KK N8P H17 SING N N 73 3KK CAP H18 SING N N 74 3KK OAP H19 SING N N 75 3KK CDP H20 SING N N 76 3KK CDP H21 SING N N 77 3KK CDP H22 SING N N 78 3KK CEP H23 SING N N 79 3KK CEP H24 SING N N 80 3KK CEP H25 SING N N 81 3KK CCP H26 SING N N 82 3KK CCP H27 SING N N 83 3KK O4A H28 SING N N 84 3KK O2A H29 SING N N 85 3KK C5B H30 SING N N 86 3KK C5B H31 SING N N 87 3KK C4B H32 SING N N 88 3KK C3B H33 SING N N 89 3KK O7A H34 SING N N 90 3KK O9A H35 SING N N 91 3KK C2B H36 SING N N 92 3KK O2B H37 SING N N 93 3KK C1B H38 SING N N 94 3KK C8A H39 SING N N 95 3KK C2A H40 SING N N 96 3KK N6A H41 SING N N 97 3KK N6A H42 SING N N 98 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3KK SMILES ACDLabs 12.01 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)C(O)(C)C" 3KK InChI InChI 1.03 "InChI=1S/C25H42N7O18P3S/c1-24(2,18(35)21(36)28-6-5-14(33)27-7-8-54-23(37)25(3,4)38)10-47-53(44,45)50-52(42,43)46-9-13-17(49-51(39,40)41)16(34)22(48-13)32-12-31-15-19(26)29-11-30-20(15)32/h11-13,16-18,22,34-35,38H,5-10H2,1-4H3,(H,27,33)(H,28,36)(H,42,43)(H,44,45)(H2,26,29,30)(H2,39,40,41)/t13-,16-,17-,18+,22-/m1/s1" 3KK InChIKey InChI 1.03 FFVUICCDNWZCRC-ZSJPKINUSA-N 3KK SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 3KK SMILES CACTVS 3.385 "CC(C)(O)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 3KK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)C(C)(C)O)O" 3KK SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)C(C)(C)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3KK "SYSTEMATIC NAME" ACDLabs 12.01 "S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxy-2-methylpropanethioate (non-preferred name)" 3KK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-methyl-2-oxidanyl-propanethioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3KK "Create component" 2014-09-04 RCSB 3KK "Modify synonyms" 2014-09-16 RCSB 3KK "Initial release" 2015-03-11 RCSB 3KK "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3KK _pdbx_chem_comp_synonyms.name "2-Hydroxyisobutyryl-Coenzyme A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##