data_3KT # _chem_comp.id 3KT _chem_comp.name "(2E,5R)-5-(2-cyclohexylethyl)-5-{[(1S,3R)-3-(cyclopentylamino)cyclohexyl]methyl}-2-imino-3-methylimidazolidin-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H42 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-08 _chem_comp.pdbx_modified_date 2019-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3KT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4R91 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3KT C12 C12 C 0 1 N N R 24.989 10.955 20.612 3.196 1.012 0.123 C12 3KT 1 3KT C13 C13 C 0 1 N N S 22.538 10.510 20.466 1.013 2.128 -0.354 C13 3KT 2 3KT C3 C3 C 0 1 N N N 21.182 11.820 23.263 -0.633 -0.233 0.454 C3 3KT 3 3KT C1 C1 C 0 1 N N N 22.018 9.891 24.113 -0.301 -0.619 -1.732 C1 3KT 4 3KT C4 C4 C 0 1 N N R 20.725 10.692 22.360 -1.186 0.942 -0.324 C4 3KT 5 3KT C7 C7 C 0 1 N N N 21.133 10.909 20.906 -0.456 2.230 0.063 C7 3KT 6 3KT N2 N2 N 0 1 N N N 21.881 11.235 24.288 -0.137 -1.094 -0.454 N2 3KT 7 3KT C9 C9 C 0 1 N N N 19.210 10.551 22.380 -2.689 1.086 -0.077 C9 3KT 8 3KT C11 C11 C 0 1 N N N 22.581 12.008 25.307 0.497 -2.373 -0.122 C11 3KT 9 3KT N5 N5 N 0 1 N N N 22.690 9.144 24.919 0.087 -1.246 -2.805 N5 3KT 10 3KT N6 N6 N 0 1 N N N 21.342 9.523 22.982 -0.926 0.604 -1.732 N6 3KT 11 3KT O8 O8 O 0 1 N N N 20.909 13.008 23.150 -0.633 -0.370 1.659 O8 3KT 12 3KT N10 N10 N 0 1 N N N 26.017 11.656 21.463 3.883 0.037 0.981 N10 3KT 13 3KT C14 C14 C 0 1 N N N 23.626 11.326 21.167 1.728 1.113 0.540 C14 3KT 14 3KT C15 C15 C 0 1 N N N 18.554 10.624 23.754 -3.392 -0.227 -0.426 C15 3KT 15 3KT C16 C16 C 0 1 N N N 27.426 11.600 20.971 5.054 -0.531 0.300 C16 3KT 16 3KT C17 C17 C 0 1 N N N 17.094 10.195 23.748 -4.895 -0.083 -0.180 C17 3KT 17 3KT C18 C18 C 0 1 N N N 23.994 10.551 18.386 3.149 3.396 -0.623 C18 3KT 18 3KT C19 C19 C 0 1 N N N 25.062 11.343 19.134 3.864 2.380 0.270 C19 3KT 19 3KT C20 C20 C 0 1 N N N 22.604 10.802 18.971 1.680 3.497 -0.206 C20 3KT 20 3KT C21 C21 C 0 1 N N N 27.873 10.146 20.878 4.637 -1.763 -0.530 C21 3KT 21 3KT C22 C22 C 0 1 N N N 28.262 12.271 22.034 6.078 -1.025 1.336 C22 3KT 22 3KT C23 C23 C 0 1 N N N 16.186 11.219 23.064 -5.149 0.128 1.314 C23 3KT 23 3KT C24 C24 C 0 1 N N N 16.651 9.969 25.189 -5.612 -1.351 -0.646 C24 3KT 24 3KT C25 C25 C 0 1 N N N 15.185 9.551 25.297 -7.115 -1.207 -0.400 C25 3KT 25 3KT C26 C26 C 0 1 N N N 28.937 9.916 21.919 5.825 -2.745 -0.376 C26 3KT 26 3KT C27 C27 C 0 1 N N N 29.190 11.229 22.603 6.248 -2.540 1.100 C27 3KT 27 3KT C28 C28 C 0 1 N N N 14.740 10.732 23.118 -6.652 0.272 1.560 C28 3KT 28 3KT C29 C29 C 0 1 N N N 14.271 10.509 24.549 -7.370 -0.996 1.094 C29 3KT 29 3KT H1 H1 H 0 1 N N N 25.128 9.867 20.701 3.257 0.688 -0.916 H1 3KT 30 3KT H2 H2 H 0 1 N N N 22.698 9.437 20.647 1.074 1.804 -1.393 H2 3KT 31 3KT H3 H3 H 0 1 N N N 21.022 11.983 20.697 -0.518 2.372 1.142 H3 3KT 32 3KT H4 H4 H 0 1 N N N 20.426 10.340 20.284 -0.920 3.076 -0.443 H4 3KT 33 3KT H5 H5 H 0 1 N N N 18.788 11.357 21.762 -2.864 1.324 0.972 H5 3KT 34 3KT H6 H6 H 0 1 N N N 18.956 9.577 21.936 -3.084 1.887 -0.702 H6 3KT 35 3KT H7 H7 H 0 1 N N N 23.065 11.323 26.019 -0.260 -3.157 -0.096 H7 3KT 36 3KT H8 H8 H 0 1 N N N 23.344 12.639 24.828 1.245 -2.615 -0.877 H8 3KT 37 3KT H9 H9 H 0 1 N N N 21.862 12.645 25.843 0.976 -2.298 0.854 H9 3KT 38 3KT H10 H10 H 0 1 N N N 23.088 9.668 25.672 0.524 -2.109 -2.732 H10 3KT 39 3KT H12 H12 H 0 1 N N N 25.754 12.619 21.529 4.144 0.452 1.863 H12 3KT 40 3KT H14 H14 H 0 1 N N N 23.443 12.398 20.999 1.252 0.138 0.435 H14 3KT 41 3KT H15 H15 H 0 1 N N N 23.602 11.115 22.246 1.667 1.437 1.579 H15 3KT 42 3KT H16 H16 H 0 1 N N N 19.108 9.967 24.441 -3.217 -0.465 -1.476 H16 3KT 43 3KT H17 H17 H 0 1 N N N 18.611 11.662 24.113 -2.997 -1.028 0.199 H17 3KT 44 3KT H18 H18 H 0 1 N N N 27.534 12.108 20.001 5.509 0.219 -0.347 H18 3KT 45 3KT H19 H19 H 0 1 N N N 17.013 9.242 23.205 -5.273 0.774 -0.738 H19 3KT 46 3KT H20 H20 H 0 1 N N N 24.226 9.478 18.460 3.625 4.371 -0.518 H20 3KT 47 3KT H21 H21 H 0 1 N N N 23.998 10.854 17.329 3.210 3.072 -1.662 H21 3KT 48 3KT H22 H22 H 0 1 N N N 26.057 11.100 18.733 3.803 2.704 1.309 H22 3KT 49 3KT H23 H23 H 0 1 N N N 24.875 12.421 19.021 4.910 2.308 -0.027 H23 3KT 50 3KT H24 H24 H 0 1 N N N 22.337 11.856 18.805 1.171 4.220 -0.843 H24 3KT 51 3KT H25 H25 H 0 1 N N N 21.881 10.155 18.453 1.619 3.821 0.833 H25 3KT 52 3KT H26 H26 H 0 1 N N N 27.018 9.480 21.066 3.724 -2.203 -0.127 H26 3KT 53 3KT H27 H27 H 0 1 N N N 28.281 9.945 19.877 4.501 -1.490 -1.576 H27 3KT 54 3KT H28 H28 H 0 1 N N N 28.845 13.092 21.591 7.031 -0.516 1.191 H28 3KT 55 3KT H29 H29 H 0 1 N N N 27.612 12.669 22.827 5.707 -0.844 2.344 H29 3KT 56 3KT H30 H30 H 0 1 N N N 16.494 11.339 22.015 -4.770 -0.729 1.871 H30 3KT 57 3KT H31 H31 H 0 1 N N N 16.267 12.186 23.583 -4.638 1.031 1.645 H31 3KT 58 3KT H32 H32 H 0 1 N N N 17.276 9.178 25.629 -5.431 -1.501 -1.711 H32 3KT 59 3KT H33 H33 H 0 1 N N N 16.793 10.904 25.751 -5.234 -2.208 -0.089 H33 3KT 60 3KT H34 H34 H 0 1 N N N 14.895 9.537 26.358 -7.494 -0.350 -0.957 H34 3KT 61 3KT H35 H35 H 0 1 N N N 15.069 8.543 24.872 -7.626 -2.110 -0.732 H35 3KT 62 3KT H36 H36 H 0 1 N N N 28.591 9.171 22.651 5.502 -3.772 -0.546 H36 3KT 63 3KT H37 H37 H 0 1 N N N 29.006 11.123 23.682 7.288 -2.835 1.243 H37 3KT 64 3KT H38 H38 H 0 1 N N N 14.093 11.485 22.645 -6.833 0.422 2.624 H38 3KT 65 3KT H39 H39 H 0 1 N N N 14.663 9.783 22.566 -7.031 1.129 1.003 H39 3KT 66 3KT H40 H40 H 0 1 N N N 14.260 11.475 25.075 -8.440 -0.893 1.270 H40 3KT 67 3KT H41 H41 H 0 1 N N N 13.254 10.090 24.530 -6.991 -1.853 1.651 H41 3KT 68 3KT H11 H11 H 0 1 N N N 21.279 8.589 22.632 -1.151 1.140 -2.509 H11 3KT 69 3KT H13 H13 H 0 1 N N N 29.860 9.558 21.440 6.638 -2.477 -1.051 H13 3KT 70 3KT H42 H42 H 0 1 N N N 30.233 11.535 22.437 5.596 -3.105 1.766 H42 3KT 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3KT C18 C20 SING N N 1 3KT C18 C19 SING N N 2 3KT C20 C13 SING N N 3 3KT C19 C12 SING N N 4 3KT C13 C7 SING N N 5 3KT C13 C14 SING N N 6 3KT C12 C14 SING N N 7 3KT C12 N10 SING N N 8 3KT C21 C16 SING N N 9 3KT C21 C26 SING N N 10 3KT C7 C4 SING N N 11 3KT C16 N10 SING N N 12 3KT C16 C22 SING N N 13 3KT C26 C27 SING N N 14 3KT C22 C27 SING N N 15 3KT C4 C9 SING N N 16 3KT C4 N6 SING N N 17 3KT C4 C3 SING N N 18 3KT C9 C15 SING N N 19 3KT N6 C1 SING N N 20 3KT C23 C28 SING N N 21 3KT C23 C17 SING N N 22 3KT C28 C29 SING N N 23 3KT O8 C3 DOUB N N 24 3KT C3 N2 SING N N 25 3KT C17 C15 SING N N 26 3KT C17 C24 SING N N 27 3KT C1 N2 SING N N 28 3KT C1 N5 DOUB N N 29 3KT N2 C11 SING N N 30 3KT C29 C25 SING N N 31 3KT C24 C25 SING N N 32 3KT C12 H1 SING N N 33 3KT C13 H2 SING N N 34 3KT C7 H3 SING N N 35 3KT C7 H4 SING N N 36 3KT C9 H5 SING N N 37 3KT C9 H6 SING N N 38 3KT C11 H7 SING N N 39 3KT C11 H8 SING N N 40 3KT C11 H9 SING N N 41 3KT N5 H10 SING N N 42 3KT N10 H12 SING N N 43 3KT C14 H14 SING N N 44 3KT C14 H15 SING N N 45 3KT C15 H16 SING N N 46 3KT C15 H17 SING N N 47 3KT C16 H18 SING N N 48 3KT C17 H19 SING N N 49 3KT C18 H20 SING N N 50 3KT C18 H21 SING N N 51 3KT C19 H22 SING N N 52 3KT C19 H23 SING N N 53 3KT C20 H24 SING N N 54 3KT C20 H25 SING N N 55 3KT C21 H26 SING N N 56 3KT C21 H27 SING N N 57 3KT C22 H28 SING N N 58 3KT C22 H29 SING N N 59 3KT C23 H30 SING N N 60 3KT C23 H31 SING N N 61 3KT C24 H32 SING N N 62 3KT C24 H33 SING N N 63 3KT C25 H34 SING N N 64 3KT C25 H35 SING N N 65 3KT C26 H36 SING N N 66 3KT C27 H37 SING N N 67 3KT C28 H38 SING N N 68 3KT C28 H39 SING N N 69 3KT C29 H40 SING N N 70 3KT C29 H41 SING N N 71 3KT N6 H11 SING N N 72 3KT C26 H13 SING N N 73 3KT C27 H42 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3KT SMILES ACDLabs 12.01 "O=C1N(C(=[N@H])NC1(CC3CCCC(NC2CCCC2)C3)CCC4CCCCC4)C" 3KT InChI InChI 1.03 "InChI=1S/C24H42N4O/c1-28-22(29)24(27-23(28)25,15-14-18-8-3-2-4-9-18)17-19-10-7-13-21(16-19)26-20-11-5-6-12-20/h18-21,26H,2-17H2,1H3,(H2,25,27)/t19-,21+,24+/m0/s1" 3KT InChIKey InChI 1.03 NOZCXTAZEGFFAQ-XZDHIHRUSA-N 3KT SMILES_CANONICAL CACTVS 3.385 "CN1C(=N)N[C@](CCC2CCCCC2)(C[C@H]3CCC[C@H](C3)NC4CCCC4)C1=O" 3KT SMILES CACTVS 3.385 "CN1C(=N)N[C](CCC2CCCCC2)(C[CH]3CCC[CH](C3)NC4CCCC4)C1=O" 3KT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C/1\N[C@](C(=O)N1C)(CCC2CCCCC2)C[C@H]3CCC[C@H](C3)NC4CCCC4" 3KT SMILES "OpenEye OEToolkits" 1.7.6 "CN1C(=O)C(NC1=N)(CCC2CCCCC2)CC3CCCC(C3)NC4CCCC4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3KT "SYSTEMATIC NAME" ACDLabs 12.01 "(2E,5R)-5-(2-cyclohexylethyl)-5-{[(1S,3R)-3-(cyclopentylamino)cyclohexyl]methyl}-2-imino-3-methylimidazolidin-4-one" 3KT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(5R)-2-azanylidene-5-(2-cyclohexylethyl)-5-[[(1S,3R)-3-(cyclopentylamino)cyclohexyl]methyl]-3-methyl-imidazolidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3KT "Create component" 2014-09-08 RCSB 3KT "Initial release" 2014-11-05 RCSB 3KT "Other modification" 2019-12-08 RCSB ##