data_3KU # _chem_comp.id 3KU _chem_comp.name "N-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]pyridine-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H37 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-08 _chem_comp.pdbx_modified_date 2020-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 439.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3KU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4R92 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3KU C1 C1 C 0 1 N N N 21.321 11.832 23.228 -2.056 -0.600 1.014 C1 3KU 1 3KU C2 C2 C 0 1 N N R 20.912 10.723 22.273 -2.098 -0.138 -0.427 C2 3KU 2 3KU N3 N3 N 0 1 N N N 21.496 9.548 22.903 -2.271 -1.376 -1.204 N3 3KU 3 3KU C4 C4 C 0 1 N N N 22.127 9.890 24.075 -2.319 -2.405 -0.296 C4 3KU 4 3KU N5 N5 N 0 1 N N N 22.040 11.254 24.248 -2.193 -1.939 0.991 N5 3KU 5 3KU O6 O6 O 0 1 N N N 20.991 12.999 23.130 -1.921 0.098 1.996 O6 3KU 6 3KU C7 C7 C 0 1 N N N 19.396 10.556 22.222 -3.282 0.804 -0.652 C7 3KU 7 3KU C8 C8 C 0 1 N N S 22.929 11.038 20.694 0.392 -0.346 -0.419 C8 3KU 8 3KU C9 C9 C 0 1 N N N 18.698 10.520 23.588 -4.576 0.108 -0.225 C9 3KU 9 3KU C10 C10 C 0 1 N N N 17.244 10.075 23.544 -5.760 1.051 -0.450 C10 3KU 10 3KU C11 C11 C 0 1 N N N 23.379 12.188 19.809 1.699 0.435 -0.568 C11 3KU 11 3KU C12 C12 C 0 1 N N R 24.899 12.133 19.643 2.876 -0.463 -0.182 C12 3KU 12 3KU C13 C13 C 0 1 N N N 25.386 10.785 19.124 2.907 -1.687 -1.099 C13 3KU 13 3KU C14 C14 C 0 1 N N N 24.936 9.689 20.066 1.600 -2.468 -0.950 C14 3KU 14 3KU C15 C15 C 0 1 N N N 23.412 9.706 20.131 0.422 -1.570 -1.336 C15 3KU 15 3KU C16 C16 C 0 1 N N N 16.807 9.749 24.969 -7.064 0.313 -0.140 C16 3KU 16 3KU C17 C17 C 0 1 N N N 15.340 9.344 25.086 -8.249 1.255 -0.366 C17 3KU 17 3KU C18 C18 C 0 1 N N N 14.424 10.367 24.423 -8.118 2.469 0.557 C18 3KU 18 3KU C19 C19 C 0 1 N N N 14.882 10.720 23.012 -6.813 3.206 0.248 C19 3KU 19 3KU C20 C20 C 0 1 N N N 16.346 11.152 22.948 -5.629 2.264 0.473 C20 3KU 20 3KU N21 N21 N 0 1 N N N 22.734 9.105 24.902 -2.466 -3.659 -0.612 N21 3KU 21 3KU N22 N22 N 0 1 N N N 25.389 13.207 18.818 4.128 0.285 -0.324 N22 3KU 22 3KU C23 C23 C 0 1 N N N 25.762 14.399 19.420 5.210 -0.068 0.398 C23 3KU 23 3KU C24 C24 C 0 1 N N N 21.415 10.976 20.854 -0.785 0.552 -0.805 C24 3KU 24 3KU C25 C25 C 0 1 N N N 22.650 12.016 25.333 -2.206 -2.790 2.183 C25 3KU 25 3KU O26 O26 O 0 1 N N N 25.681 14.646 20.620 5.148 -1.007 1.167 O26 3KU 26 3KU C27 C27 C 0 1 Y N N 26.304 15.410 18.503 6.476 0.688 0.254 C27 3KU 27 3KU C28 C28 C 0 1 Y N N 26.483 16.705 18.955 7.610 0.339 0.993 C28 3KU 28 3KU C29 C29 C 0 1 Y N N 27.000 17.622 18.061 8.769 1.071 0.827 C29 3KU 29 3KU C30 C30 C 0 1 Y N N 26.636 15.076 17.207 6.571 1.768 -0.629 C30 3KU 30 3KU C31 C31 C 0 1 Y N N 27.157 16.068 16.402 7.772 2.442 -0.737 C31 3KU 31 3KU N32 N32 N 0 1 Y N N 27.349 17.336 16.797 8.815 2.086 -0.012 N32 3KU 32 3KU H1 H1 H 0 1 N N N 18.980 11.398 21.649 -3.144 1.709 -0.061 H1 3KU 33 3KU H2 H2 H 0 1 N N N 19.175 9.613 21.701 -3.342 1.066 -1.709 H2 3KU 34 3KU H3 H3 H 0 1 N N N 23.376 11.173 21.690 0.278 -0.670 0.615 H3 3KU 35 3KU H4 H4 H 0 1 N N N 19.250 9.825 24.237 -4.714 -0.797 -0.816 H4 3KU 36 3KU H5 H5 H 0 1 N N N 18.734 11.531 24.019 -4.515 -0.153 0.832 H5 3KU 37 3KU H6 H6 H 0 1 N N N 17.167 9.165 22.930 -5.768 1.383 -1.488 H6 3KU 38 3KU H7 H7 H 0 1 N N N 23.094 13.143 20.275 1.813 0.759 -1.602 H7 3KU 39 3KU H8 H8 H 0 1 N N N 22.898 12.103 18.823 1.678 1.307 0.086 H8 3KU 40 3KU H9 H9 H 0 1 N N N 25.330 12.259 20.647 2.763 -0.786 0.853 H9 3KU 41 3KU H10 H10 H 0 1 N N N 24.966 10.604 18.124 3.021 -1.363 -2.134 H10 3KU 42 3KU H11 H11 H 0 1 N N N 26.484 10.790 19.065 3.746 -2.326 -0.824 H11 3KU 43 3KU H12 H12 H 0 1 N N N 25.281 8.713 19.693 1.621 -3.340 -1.604 H12 3KU 44 3KU H13 H13 H 0 1 N N N 25.353 9.866 21.068 1.486 -2.792 0.084 H13 3KU 45 3KU H14 H14 H 0 1 N N N 23.003 9.568 19.119 -0.509 -2.127 -1.230 H14 3KU 46 3KU H15 H15 H 0 1 N N N 23.066 8.889 20.781 0.536 -1.247 -2.371 H15 3KU 47 3KU H16 H16 H 0 1 N N N 17.427 8.919 25.341 -7.158 -0.551 -0.798 H16 3KU 48 3KU H17 H17 H 0 1 N N N 16.972 10.639 25.594 -7.057 -0.019 0.898 H17 3KU 49 3KU H18 H18 H 0 1 N N N 15.075 9.264 26.151 -8.257 1.587 -1.404 H18 3KU 50 3KU H19 H19 H 0 1 N N N 15.198 8.368 24.598 -9.178 0.730 -0.145 H19 3KU 51 3KU H20 H20 H 0 1 N N N 14.416 11.283 25.032 -8.961 3.140 0.397 H20 3KU 52 3KU H21 H21 H 0 1 N N N 13.407 9.951 24.372 -8.110 2.136 1.595 H21 3KU 53 3KU H22 H22 H 0 1 N N N 14.257 11.544 22.637 -6.821 3.538 -0.790 H22 3KU 54 3KU H23 H23 H 0 1 N N N 14.749 9.837 22.370 -6.720 4.071 0.905 H23 3KU 55 3KU H24 H24 H 0 1 N N N 16.629 11.320 21.898 -5.621 1.932 1.511 H24 3KU 56 3KU H25 H25 H 0 1 N N N 16.474 12.085 23.516 -4.700 2.789 0.253 H25 3KU 57 3KU H26 H26 H 0 1 N N N 23.128 9.605 25.673 -2.491 -4.335 0.083 H26 3KU 58 3KU H28 H28 H 0 1 N N N 25.459 13.095 17.827 4.178 1.035 -0.938 H28 3KU 59 3KU H29 H29 H 0 1 N N N 20.999 11.936 20.513 -0.767 0.733 -1.880 H29 3KU 60 3KU H30 H30 H 0 1 N N N 21.040 10.165 20.212 -0.707 1.501 -0.275 H30 3KU 61 3KU H31 H31 H 0 1 N N N 23.167 11.329 26.019 -3.229 -2.898 2.542 H31 3KU 62 3KU H32 H32 H 0 1 N N N 23.374 12.732 24.916 -1.803 -3.772 1.933 H32 3KU 63 3KU H33 H33 H 0 1 N N N 21.869 12.562 25.882 -1.594 -2.334 2.961 H33 3KU 64 3KU H34 H34 H 0 1 N N N 26.229 16.988 19.966 7.580 -0.491 1.683 H34 3KU 65 3KU H35 H35 H 0 1 N N N 27.132 18.638 18.402 9.651 0.809 1.394 H35 3KU 66 3KU H36 H36 H 0 1 N N N 26.493 14.072 16.835 5.719 2.071 -1.219 H36 3KU 67 3KU H37 H37 H 0 1 N N N 27.428 15.807 15.389 7.854 3.280 -1.413 H37 3KU 68 3KU H38 H38 H 0 1 N N N 21.445 8.620 22.534 -2.338 -1.451 -2.169 H38 3KU 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3KU C31 N32 DOUB Y N 1 3KU C31 C30 SING Y N 2 3KU N32 C29 SING Y N 3 3KU C30 C27 DOUB Y N 4 3KU C29 C28 DOUB Y N 5 3KU C27 C28 SING Y N 6 3KU C27 C23 SING N N 7 3KU N22 C23 SING N N 8 3KU N22 C12 SING N N 9 3KU C13 C12 SING N N 10 3KU C13 C14 SING N N 11 3KU C23 O26 DOUB N N 12 3KU C12 C11 SING N N 13 3KU C11 C8 SING N N 14 3KU C14 C15 SING N N 15 3KU C15 C8 SING N N 16 3KU C8 C24 SING N N 17 3KU C24 C2 SING N N 18 3KU C7 C2 SING N N 19 3KU C7 C9 SING N N 20 3KU C2 N3 SING N N 21 3KU C2 C1 SING N N 22 3KU N3 C4 SING N N 23 3KU C20 C19 SING N N 24 3KU C20 C10 SING N N 25 3KU C19 C18 SING N N 26 3KU O6 C1 DOUB N N 27 3KU C1 N5 SING N N 28 3KU C10 C9 SING N N 29 3KU C10 C16 SING N N 30 3KU C4 N5 SING N N 31 3KU C4 N21 DOUB N N 32 3KU N5 C25 SING N N 33 3KU C18 C17 SING N N 34 3KU C16 C17 SING N N 35 3KU C7 H1 SING N N 36 3KU C7 H2 SING N N 37 3KU C8 H3 SING N N 38 3KU C9 H4 SING N N 39 3KU C9 H5 SING N N 40 3KU C10 H6 SING N N 41 3KU C11 H7 SING N N 42 3KU C11 H8 SING N N 43 3KU C12 H9 SING N N 44 3KU C13 H10 SING N N 45 3KU C13 H11 SING N N 46 3KU C14 H12 SING N N 47 3KU C14 H13 SING N N 48 3KU C15 H14 SING N N 49 3KU C15 H15 SING N N 50 3KU C16 H16 SING N N 51 3KU C16 H17 SING N N 52 3KU C17 H18 SING N N 53 3KU C17 H19 SING N N 54 3KU C18 H20 SING N N 55 3KU C18 H21 SING N N 56 3KU C19 H22 SING N N 57 3KU C19 H23 SING N N 58 3KU C20 H24 SING N N 59 3KU C20 H25 SING N N 60 3KU N21 H26 SING N N 61 3KU N22 H28 SING N N 62 3KU C24 H29 SING N N 63 3KU C24 H30 SING N N 64 3KU C25 H31 SING N N 65 3KU C25 H32 SING N N 66 3KU C25 H33 SING N N 67 3KU C28 H34 SING N N 68 3KU C29 H35 SING N N 69 3KU C30 H36 SING N N 70 3KU C31 H37 SING N N 71 3KU N3 H38 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3KU SMILES ACDLabs 12.01 "O=C1N(C(=[N@H])NC1(CC3CCCC(NC(=O)c2ccncc2)C3)CCC4CCCCC4)C" 3KU InChI InChI 1.03 "InChI=1S/C25H37N5O2/c1-30-23(32)25(29-24(30)26,13-10-18-6-3-2-4-7-18)17-19-8-5-9-21(16-19)28-22(31)20-11-14-27-15-12-20/h11-12,14-15,18-19,21H,2-10,13,16-17H2,1H3,(H2,26,29)(H,28,31)/t19-,21+,25+/m0/s1" 3KU InChIKey InChI 1.03 NAGJGYNUXJYJOV-PIBDYAPNSA-N 3KU SMILES_CANONICAL CACTVS 3.385 "CN1C(=N)N[C@](CCC2CCCCC2)(C[C@H]3CCC[C@H](C3)NC(=O)c4ccncc4)C1=O" 3KU SMILES CACTVS 3.385 "CN1C(=N)N[C](CCC2CCCCC2)(C[CH]3CCC[CH](C3)NC(=O)c4ccncc4)C1=O" 3KU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C/1\N[C@](C(=O)N1C)(CCC2CCCCC2)C[C@H]3CCC[C@H](C3)NC(=O)c4ccncc4" 3KU SMILES "OpenEye OEToolkits" 1.7.6 "CN1C(=O)C(NC1=N)(CCC2CCCCC2)CC3CCCC(C3)NC(=O)c4ccncc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3KU "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]pyridine-4-carboxamide" 3KU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(1R,3S)-3-[[(4R)-2-azanylidene-4-(2-cyclohexylethyl)-1-methyl-5-oxidanylidene-imidazolidin-4-yl]methyl]cyclohexyl]pyridine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3KU "Create component" 2014-09-08 RCSB 3KU "Initial release" 2014-11-05 RCSB 3KU "Other modification" 2020-06-27 RCSB ##