data_3L6
#
_chem_comp.id 3L6
_chem_comp.name "(2-{[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl](3-aminopropyl)amino}ethyl)phosphonic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H22 N7 O4 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-09-11
_chem_comp.pdbx_modified_date 2015-01-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 359.321
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3L6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4RAN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3L6 NAA NAA N 0 1 N N N -17.184 -15.387 26.270 0.433 5.457 0.322 NAA 3L6 1
3L6 CAG CAG C 0 1 N N N -17.758 -15.072 25.184 1.299 4.385 0.834 CAG 3L6 2
3L6 CAI CAI C 0 1 N N N -18.438 -14.706 23.909 0.886 3.053 0.206 CAI 3L6 3
3L6 CAJ CAJ C 0 1 N N N -17.695 -14.720 22.638 1.787 1.937 0.738 CAJ 3L6 4
3L6 NAV NAV N 0 1 N N N -17.271 -15.959 22.050 1.447 0.673 0.071 NAV 3L6 5
3L6 CAL CAL C 0 1 N N N -18.306 -16.979 22.248 2.508 -0.326 0.264 CAL 3L6 6
3L6 CAN CAN C 0 1 N N N -18.124 -18.148 21.241 3.778 0.134 -0.453 CAN 3L6 7
3L6 PAX PAX P 0 1 N N N -18.127 -19.780 22.105 5.094 -1.105 -0.214 PAX 3L6 8
3L6 OAD OAD O 0 1 N N N -19.109 -20.749 21.376 5.287 -1.345 1.234 OAD 3L6 9
3L6 OAF OAF O 0 1 N N N -18.592 -19.625 23.625 4.673 -2.481 -0.935 OAF 3L6 10
3L6 OAE OAE O 0 1 N N N -16.734 -20.349 22.060 6.467 -0.561 -0.856 OAE 3L6 11
3L6 CAK CAK C 0 1 N N N -17.039 -15.730 20.612 0.152 0.162 0.539 CAK 3L6 12
3L6 CAM CAM C 0 1 N N N -15.599 -15.312 20.426 -0.406 -0.828 -0.486 CAM 3L6 13
3L6 N9 N9 N 0 1 Y N N -15.145 -15.615 19.085 -1.711 -1.315 -0.033 N9 3L6 14
3L6 C4 C4 C 0 1 Y N N -14.989 -14.688 18.086 -2.918 -0.703 -0.235 C4 3L6 15
3L6 N3 N3 N 0 1 N N N -15.197 -13.373 18.058 -3.302 0.425 -0.844 N3 3L6 16
3L6 C2 C2 C 0 1 N N N -14.972 -12.692 16.947 -4.568 0.777 -0.887 C2 3L6 17
3L6 N2 N2 N 0 1 N N N -15.193 -11.288 16.916 -4.914 1.943 -1.523 N2 3L6 18
3L6 N1 N1 N 0 1 N N N -14.521 -13.332 15.825 -5.547 0.018 -0.318 N1 3L6 19
3L6 C6 C6 C 0 1 N N N -14.295 -14.648 15.787 -5.235 -1.135 0.315 C6 3L6 20
3L6 O6 O6 O 0 1 N N N -13.838 -15.257 14.614 -6.103 -1.820 0.828 O6 3L6 21
3L6 C5 C5 C 0 1 Y N N -14.530 -15.389 16.956 -3.876 -1.526 0.369 C5 3L6 22
3L6 N7 N7 N 0 1 Y N N -14.422 -16.740 17.335 -3.219 -2.584 0.902 N7 3L6 23
3L6 C8 C8 C 0 1 Y N N -14.798 -16.870 18.640 -1.946 -2.467 0.661 C8 3L6 24
3L6 H1 H1 H 0 1 N N N -16.318 -14.892 26.346 -0.539 5.247 0.491 H1 3L6 25
3L6 H2 H2 H 0 1 N N N -17.774 -15.146 27.041 0.686 6.347 0.723 H2 3L6 26
3L6 H4 H4 H 0 1 N N N -16.856 -15.356 24.623 2.336 4.602 0.577 H4 3L6 27
3L6 H5 H5 H 0 1 N N N -17.699 -14.009 25.459 1.198 4.323 1.917 H5 3L6 28
3L6 H6 H6 H 0 1 N N N -18.823 -13.684 24.039 -0.151 2.836 0.462 H6 3L6 29
3L6 H7 H7 H 0 1 N N N -19.281 -15.403 23.790 0.986 3.115 -0.878 H7 3L6 30
3L6 H8 H8 H 0 1 N N N -16.786 -14.121 22.799 2.829 2.185 0.538 H8 3L6 31
3L6 H9 H9 H 0 1 N N N -18.335 -14.222 21.895 1.639 1.832 1.813 H9 3L6 32
3L6 H11 H11 H 0 1 N N N -19.296 -16.523 22.097 2.712 -0.438 1.329 H11 3L6 33
3L6 H12 H12 H 0 1 N N N -18.235 -17.371 23.273 2.185 -1.282 -0.147 H12 3L6 34
3L6 H13 H13 H 0 1 N N N -17.166 -18.022 20.715 3.574 0.247 -1.518 H13 3L6 35
3L6 H14 H14 H 0 1 N N N -18.948 -18.126 20.513 4.101 1.091 -0.043 H14 3L6 36
3L6 H15 H15 H 0 1 N N N -19.368 -20.152 23.775 4.529 -2.398 -1.888 H15 3L6 37
3L6 H16 H16 H 0 1 N N N -16.745 -21.179 21.597 7.212 -1.170 -0.765 H16 3L6 38
3L6 H17 H17 H 0 1 N N N -17.707 -14.935 20.249 0.284 -0.342 1.496 H17 3L6 39
3L6 H18 H18 H 0 1 N N N -17.233 -16.656 20.052 -0.544 0.992 0.658 H18 3L6 40
3L6 H19 H19 H 0 1 N N N -14.971 -15.851 21.150 -0.518 -0.329 -1.449 H19 3L6 41
3L6 H20 H20 H 0 1 N N N -15.512 -14.229 20.600 0.280 -1.668 -0.590 H20 3L6 42
3L6 H21 H21 H 0 1 N N N -15.519 -10.815 17.735 -4.229 2.493 -1.933 H21 3L6 43
3L6 H22 H22 H 0 1 N N N -15.023 -10.773 16.076 -5.844 2.216 -1.563 H22 3L6 44
3L6 H23 H23 H 0 1 N N N -14.354 -12.793 15.000 -6.471 0.306 -0.368 H23 3L6 45
3L6 H24 H24 H 0 1 N N N -14.819 -17.784 19.215 -1.188 -3.170 0.972 H24 3L6 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3L6 O6 C6 DOUB N N 1
3L6 C6 N1 SING N N 2
3L6 C6 C5 SING N N 3
3L6 N1 C2 SING N N 4
3L6 N2 C2 SING N N 5
3L6 C2 N3 DOUB N N 6
3L6 C5 N7 SING Y N 7
3L6 C5 C4 DOUB Y N 8
3L6 N7 C8 DOUB Y N 9
3L6 N3 C4 SING N N 10
3L6 C4 N9 SING Y N 11
3L6 C8 N9 SING Y N 12
3L6 N9 CAM SING N N 13
3L6 CAM CAK SING N N 14
3L6 CAK NAV SING N N 15
3L6 CAN PAX SING N N 16
3L6 CAN CAL SING N N 17
3L6 OAD PAX DOUB N N 18
3L6 NAV CAL SING N N 19
3L6 NAV CAJ SING N N 20
3L6 OAE PAX SING N N 21
3L6 PAX OAF SING N N 22
3L6 CAJ CAI SING N N 23
3L6 CAI CAG SING N N 24
3L6 CAG NAA SING N N 25
3L6 NAA H1 SING N N 26
3L6 NAA H2 SING N N 27
3L6 CAG H4 SING N N 28
3L6 CAG H5 SING N N 29
3L6 CAI H6 SING N N 30
3L6 CAI H7 SING N N 31
3L6 CAJ H8 SING N N 32
3L6 CAJ H9 SING N N 33
3L6 CAL H11 SING N N 34
3L6 CAL H12 SING N N 35
3L6 CAN H13 SING N N 36
3L6 CAN H14 SING N N 37
3L6 OAF H15 SING N N 38
3L6 OAE H16 SING N N 39
3L6 CAK H17 SING N N 40
3L6 CAK H18 SING N N 41
3L6 CAM H19 SING N N 42
3L6 CAM H20 SING N N 43
3L6 N2 H21 SING N N 44
3L6 N2 H22 SING N N 45
3L6 N1 H23 SING N N 46
3L6 C8 H24 SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3L6 SMILES ACDLabs 12.01 "O=P(O)(O)CCN(CCCN)CCn1c2N=C(NC(=O)c2nc1)N"
3L6 InChI InChI 1.03 "InChI=1S/C12H22N7O4P/c13-2-1-3-18(6-7-24(21,22)23)4-5-19-8-15-9-10(19)16-12(14)17-11(9)20/h8H,1-7,13H2,(H2,21,22,23)(H3,14,16,17,20)"
3L6 InChIKey InChI 1.03 JXSWXCFQTAYPAJ-UHFFFAOYSA-N
3L6 SMILES_CANONICAL CACTVS 3.385 "NCCCN(CCn1cnc2C(=O)NC(=Nc12)N)CC[P](O)(O)=O"
3L6 SMILES CACTVS 3.385 "NCCCN(CCn1cnc2C(=O)NC(=Nc12)N)CC[P](O)(O)=O"
3L6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1CCN(CCCN)CCP(=O)(O)O)N=C(NC2=O)N"
3L6 SMILES "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1CCN(CCCN)CCP(=O)(O)O)N=C(NC2=O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3L6 "SYSTEMATIC NAME" ACDLabs 12.01 "(2-{[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl](3-aminopropyl)amino}ethyl)phosphonic acid"
3L6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[2-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)ethyl-(3-azanylpropyl)amino]ethylphosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3L6 "Create component" 2014-09-11 RCSB
3L6 "Initial release" 2015-01-07 RCSB
#