data_3LT # _chem_comp.id 3LT _chem_comp.name "(4R)-4-[[(2S)-2-[[(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanoyl]amino]propanoyl]amino]-5-azanyl-5-oxidanylidene-pentanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H32 N4 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-19 _chem_comp.pdbx_modified_date 2015-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.478 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3LT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4PI9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3LT CAA C1 C 0 1 N N R -0.969 5.073 -9.438 5.413 1.335 0.353 CAA 3LT 1 3LT CAJ C2 C 0 1 N N R -2.053 4.784 -10.510 4.104 0.792 -0.226 CAJ 3LT 2 3LT CAI C3 C 0 1 N N R -1.692 5.644 -11.768 3.922 -0.663 0.218 CAI 3LT 3 3LT CAG C4 C 0 1 N N S -1.638 7.127 -11.361 5.139 -1.477 -0.232 CAG 3LT 4 3LT CAD C5 C 0 1 N N R -0.680 7.310 -10.157 6.408 -0.847 0.347 CAD 3LT 5 3LT CAE C6 C 0 1 N N N -0.555 8.762 -9.633 7.633 -1.620 -0.147 CAE 3LT 6 3LT CAL C7 C 0 1 N N N -3.047 2.554 -11.013 2.567 2.671 -0.440 CAL 3LT 7 3LT CAN C8 C 0 1 N N N -2.774 1.164 -11.511 1.413 3.500 0.062 CAN 3LT 8 3LT CAP C9 C 0 1 N N R -2.366 4.541 -13.792 1.603 -1.203 0.488 CAP 3LT 9 3LT CAR C10 C 0 1 N N N -3.583 3.788 -14.235 0.346 -1.072 -0.333 CAR 3LT 10 3LT CAQ C11 C 0 1 N N N -1.686 5.211 -15.002 1.564 -2.515 1.274 CAQ 3LT 11 3LT OAB O1 O 0 1 N N N -1.194 4.238 -8.365 5.617 2.674 -0.103 OAB 3LT 12 3LT OAO O2 O 0 1 N N N -2.648 5.504 -12.790 2.740 -1.200 -0.378 OAO 3LT 13 3LT OAH O3 O 0 1 N N N -1.158 7.887 -12.497 5.015 -2.821 0.239 OAH 3LT 14 3LT OAC O4 O 0 1 N N N -1.105 6.461 -9.062 6.500 0.514 -0.079 OAC 3LT 15 3LT OAF O5 O 0 1 N N N -1.954 9.184 -9.547 8.807 -1.106 0.484 OAF 3LT 16 3LT OAM O6 O 0 1 N N N -4.202 2.910 -10.821 3.122 2.970 -1.476 OAM 3LT 17 3LT OAS O7 O 0 1 N N N -3.461 2.778 -14.920 0.410 -1.076 -1.545 OAS 3LT 18 3LT NAK N1 N 0 1 N N N -1.996 3.366 -10.905 2.982 1.598 0.262 NAK 3LT 19 3LT NAT N2 N 0 1 N N N -4.776 4.253 -13.830 -0.849 -0.950 0.278 NAT 3LT 20 3LT CAU C12 C 0 1 N N S -6.031 3.518 -14.151 -2.070 -0.822 -0.520 CAU 3LT 21 3LT CAW C13 C 0 1 N N N -6.925 4.051 -15.294 -3.126 -0.112 0.287 CAW 3LT 22 3LT CAV C14 C 0 1 N N N -6.844 3.382 -12.842 -2.575 -2.214 -0.907 CAV 3LT 23 3LT OAX O8 O 0 1 N N N -7.128 3.004 -16.251 -2.882 0.253 1.418 OAX 3LT 24 3LT C C15 C 0 1 N N N -8.517 6.545 -16.183 -5.185 2.300 0.402 C 3LT 25 3LT N N3 N 0 1 N N N -6.377 5.239 -15.982 -4.341 0.119 -0.248 N 3LT 26 3LT O O9 O 0 1 N N N -9.242 7.485 -15.863 -4.286 2.741 -0.282 O 3LT 27 3LT NBH N4 N 0 1 N N N -8.893 5.651 -17.110 -6.020 3.142 1.042 NBH 3LT 28 3LT CA C16 C 0 1 N N R -7.086 6.436 -15.550 -5.368 0.811 0.537 CA 3LT 29 3LT CB C17 C 0 1 N N N -7.101 6.525 -13.983 -6.754 0.418 0.022 CB 3LT 30 3LT CD C18 C 0 1 N N N -5.735 7.404 -12.030 -8.353 -1.459 -0.235 CD 3LT 31 3LT CG C19 C 0 1 N N N -6.116 7.595 -13.509 -6.988 -1.073 0.273 CG 3LT 32 3LT OE2 O10 O 0 1 N N N -5.666 6.276 -11.487 -9.066 -0.628 -0.745 OE2 3LT 33 3LT OE1 O11 O 0 1 N N N -5.557 8.478 -11.406 -8.778 -2.728 -0.120 OE1 3LT 34 3LT H1 H1 H 0 1 N N N 0.022 4.895 -9.880 5.361 1.325 1.442 H1 3LT 35 3LT H2 H2 H 0 1 N N N -3.049 5.060 -10.133 4.140 0.839 -1.314 H2 3LT 36 3LT H3 H3 H 0 1 N N N -0.697 5.338 -12.124 3.837 -0.705 1.304 H3 3LT 37 3LT H4 H4 H 0 1 N N N -2.646 7.461 -11.073 5.195 -1.476 -1.321 H4 3LT 38 3LT H5 H5 H 0 1 N N N 0.321 6.990 -10.482 6.369 -0.886 1.436 H5 3LT 39 3LT H6 H6 H 0 1 N N N -0.069 8.789 -8.646 7.520 -2.676 0.100 H6 3LT 40 3LT H7 H7 H 0 1 N N N 0.009 9.392 -10.337 7.722 -1.508 -1.228 H7 3LT 41 3LT H8 H8 H 0 1 N N N -3.725 0.627 -11.641 1.789 4.294 0.706 H8 3LT 42 3LT H9 H9 H 0 1 N N N -2.249 1.217 -12.476 0.884 3.938 -0.785 H9 3LT 43 3LT H10 H10 H 0 1 N N N -2.148 0.630 -10.781 0.730 2.866 0.628 H10 3LT 44 3LT H11 H11 H 0 1 N N N -1.653 3.809 -13.385 1.673 -0.365 1.182 H11 3LT 45 3LT H12 H12 H 0 1 N N N -0.795 5.760 -14.665 1.412 -3.346 0.586 H12 3LT 46 3LT H13 H13 H 0 1 N N N -1.389 4.440 -15.728 2.506 -2.649 1.804 H13 3LT 47 3LT H14 H14 H 0 1 N N N -2.390 5.910 -15.477 0.744 -2.483 1.992 H14 3LT 48 3LT H15 H15 H 0 1 N N N -0.540 4.399 -7.695 6.430 3.081 0.225 H15 3LT 49 3LT H16 H16 H 0 1 N N N -1.117 8.808 -12.268 5.752 -3.395 -0.010 H16 3LT 50 3LT H17 H17 H 0 1 N N N -1.996 10.078 -9.230 9.623 -1.550 0.217 H17 3LT 51 3LT H18 H18 H 0 1 N N N -1.096 2.982 -11.109 2.537 1.359 1.091 H18 3LT 52 3LT H19 H19 H 0 1 N N N -4.822 5.104 -13.306 -0.900 -0.947 1.247 H19 3LT 53 3LT H20 H20 H 0 1 N N N -5.739 2.497 -14.439 -1.857 -0.250 -1.423 H20 3LT 54 3LT H22 H22 H 0 1 N N N -6.191 3.002 -12.042 -3.484 -2.119 -1.501 H22 3LT 55 3LT H23 H23 H 0 1 N N N -7.242 4.366 -12.554 -1.811 -2.728 -1.491 H23 3LT 56 3LT H24 H24 H 0 1 N N N -7.677 2.681 -12.999 -2.789 -2.786 -0.004 H24 3LT 57 3LT H26 H26 H 0 1 N N N -5.630 5.223 -16.646 -4.537 -0.172 -1.152 H26 3LT 58 3LT H28 H28 H 0 1 N N N -9.782 5.740 -17.559 -5.903 4.101 0.955 H28 3LT 59 3LT H29 H29 H 0 1 N N N -8.284 4.895 -17.352 -6.739 2.789 1.589 H29 3LT 60 3LT H30 H30 H 0 1 N N N -6.520 7.309 -15.907 -5.276 0.526 1.585 H30 3LT 61 3LT H31 H31 H 0 1 N N N -8.114 6.786 -13.643 -7.514 0.998 0.545 H31 3LT 62 3LT H32 H32 H 0 1 N N N -6.812 5.551 -13.560 -6.815 0.621 -1.048 H32 3LT 63 3LT H33 H33 H 0 1 N N N -5.205 7.537 -14.122 -6.228 -1.653 -0.251 H33 3LT 64 3LT H34 H34 H 0 1 N N N -6.579 8.585 -13.633 -6.927 -1.275 1.342 H34 3LT 65 3LT H35 H35 H 0 1 N N N -5.370 8.288 -10.494 -9.661 -2.928 -0.460 H35 3LT 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3LT NBH C SING N N 1 3LT OAX CAW DOUB N N 2 3LT C O DOUB N N 3 3LT C CA SING N N 4 3LT N CA SING N N 5 3LT N CAW SING N N 6 3LT CA CB SING N N 7 3LT CAW CAU SING N N 8 3LT CAQ CAP SING N N 9 3LT OAS CAR DOUB N N 10 3LT CAR NAT SING N N 11 3LT CAR CAP SING N N 12 3LT CAU NAT SING N N 13 3LT CAU CAV SING N N 14 3LT CB CG SING N N 15 3LT CAP OAO SING N N 16 3LT CG CD SING N N 17 3LT OAO CAI SING N N 18 3LT OAH CAG SING N N 19 3LT CD OE2 DOUB N N 20 3LT CD OE1 SING N N 21 3LT CAI CAG SING N N 22 3LT CAI CAJ SING N N 23 3LT CAN CAL SING N N 24 3LT CAG CAD SING N N 25 3LT CAL NAK SING N N 26 3LT CAL OAM DOUB N N 27 3LT NAK CAJ SING N N 28 3LT CAJ CAA SING N N 29 3LT CAD CAE SING N N 30 3LT CAD OAC SING N N 31 3LT CAE OAF SING N N 32 3LT CAA OAC SING N N 33 3LT CAA OAB SING N N 34 3LT CAA H1 SING N N 35 3LT CAJ H2 SING N N 36 3LT CAI H3 SING N N 37 3LT CAG H4 SING N N 38 3LT CAD H5 SING N N 39 3LT CAE H6 SING N N 40 3LT CAE H7 SING N N 41 3LT CAN H8 SING N N 42 3LT CAN H9 SING N N 43 3LT CAN H10 SING N N 44 3LT CAP H11 SING N N 45 3LT CAQ H12 SING N N 46 3LT CAQ H13 SING N N 47 3LT CAQ H14 SING N N 48 3LT OAB H15 SING N N 49 3LT OAH H16 SING N N 50 3LT OAF H17 SING N N 51 3LT NAK H18 SING N N 52 3LT NAT H19 SING N N 53 3LT CAU H20 SING N N 54 3LT CAV H22 SING N N 55 3LT CAV H23 SING N N 56 3LT CAV H24 SING N N 57 3LT N H26 SING N N 58 3LT NBH H28 SING N N 59 3LT NBH H29 SING N N 60 3LT CA H30 SING N N 61 3LT CB H31 SING N N 62 3LT CB H32 SING N N 63 3LT CG H33 SING N N 64 3LT CG H34 SING N N 65 3LT OE1 H35 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3LT SMILES ACDLabs 12.01 "C1(OC(C(C(C1NC(=O)C)OC(C(NC(C)C(=O)NC(C(=O)N)CCC(=O)O)=O)C)O)CO)O" 3LT InChI InChI 1.03 "InChI=1S/C19H32N4O11/c1-7(17(30)23-10(16(20)29)4-5-12(26)27)21-18(31)8(2)33-15-13(22-9(3)25)19(32)34-11(6-24)14(15)28/h7-8,10-11,13-15,19,24,28,32H,4-6H2,1-3H3,(H2,20,29)(H,21,31)(H,22,25)(H,23,30)(H,26,27)/t7-,8+,10+,11+,13+,14+,15+,19+/m0/s1" 3LT InChIKey InChI 1.03 BSOQXXWZTUDTEL-ZUYCGGNHSA-N 3LT SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@@H](O)[C@@H]1NC(C)=O)C(=O)N[C@H](CCC(O)=O)C(N)=O" 3LT SMILES CACTVS 3.385 "C[CH](NC(=O)[CH](C)O[CH]1[CH](O)[CH](CO)O[CH](O)[CH]1NC(C)=O)C(=O)N[CH](CCC(O)=O)C(N)=O" 3LT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H](C(=O)N[C@H](CCC(=O)O)C(=O)N)NC(=O)[C@@H](C)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)CO)O)NC(=O)C" 3LT SMILES "OpenEye OEToolkits" 1.9.2 "CC(C(=O)NC(CCC(=O)O)C(=O)N)NC(=O)C(C)OC1C(C(OC(C1O)CO)O)NC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3LT "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-4-{[(2S)-2-{[(2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoyl]amino}propanoyl]amino}-5-amino-5-oxopentanoic acid (non-preferred name)" 3LT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(4R)-4-[[(2S)-2-[[(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanoyl]amino]propanoyl]amino]-5-azanyl-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3LT "Create component" 2014-09-19 RCSB 3LT "Other modification" 2015-10-03 RCSB 3LT "Initial release" 2015-10-14 RCSB #