data_3LU # _chem_comp.id 3LU _chem_comp.name ;1-({(2R)-4-carboxy-2-[(R)-carboxy{[(2R)-2-phenyl-2-sulfoacetyl]amino}methyl]-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyr idinium ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 N3 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cefsulodin, bound form" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2014-09-19 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3LU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4RDD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3LU S1 S1 S 0 1 N N N 24.330 5.446 1.352 4.324 -1.932 -0.024 S1 3LU 1 3LU C1 C1 C 0 1 Y N N 26.606 9.301 2.581 6.813 1.956 -1.639 C1 3LU 2 3LU C2 C2 C 0 1 Y N N 27.647 8.911 3.424 7.371 2.224 -0.403 C2 3LU 3 3LU C3 C3 C 0 1 Y N N 28.096 7.588 3.420 6.819 1.674 0.739 C3 3LU 4 3LU C4 C4 C 0 1 Y N N 26.446 7.047 1.721 5.145 0.596 -0.590 C4 3LU 5 3LU C5 C5 C 0 1 N N R 25.821 6.019 0.816 3.932 -0.292 -0.692 C5 3LU 6 3LU C6 C6 C 0 1 N N N 25.770 6.506 -0.611 2.798 0.314 0.095 C6 3LU 7 3LU C7 C7 C 0 1 N N R 27.992 7.747 -2.879 -0.800 0.852 -0.428 C7 3LU 8 3LU C8 C8 C 0 1 N N N 31.416 7.167 -1.338 -4.189 2.288 0.494 C8 3LU 9 3LU C9 C9 C 0 1 N N N 29.084 10.069 -1.840 -2.860 -0.332 -1.937 C9 3LU 10 3LU C10 C10 C 0 1 N N N 29.897 9.050 -1.088 -3.670 0.637 -1.126 C10 3LU 11 3LU C11 C11 C 0 1 Y N N 26.017 8.371 1.728 5.700 1.142 -1.732 C11 3LU 12 3LU N1 N1 N 0 1 N N N 26.819 6.224 -1.362 1.523 0.101 -0.287 N1 3LU 13 3LU O1 O1 O 0 1 N N N 24.605 4.541 2.485 4.715 -1.668 1.423 O1 3LU 14 3LU N3 N3 N 0 1 N N N 29.257 7.201 -2.400 -1.912 1.442 0.331 N3 3LU 15 3LU O2 O2 O 0 1 N N N 23.424 6.507 1.839 3.150 -2.727 0.070 O2 3LU 16 3LU S2 S2 S 0 1 N N N 27.550 9.246 -2.049 -1.357 -0.781 -1.016 S2 3LU 17 3LU O3 O3 O 0 1 N N N 23.716 4.661 0.238 5.509 -2.443 -0.619 O3 3LU 18 3LU O4 O4 O 0 1 N N N 24.822 7.144 -1.039 3.034 0.992 1.072 O4 3LU 19 3LU C12 C12 C 0 1 Y N N 27.493 6.669 2.568 5.710 0.855 0.645 C12 3LU 20 3LU O5 O5 O 0 1 N N N 26.554 4.477 -3.479 -0.913 0.127 2.477 O5 3LU 21 3LU O6 O6 O 0 1 N N N 27.633 5.831 -4.821 0.684 -1.243 1.801 O6 3LU 22 3LU O7 O7 O 0 1 N N N 32.487 7.719 -1.676 -4.628 2.014 1.594 O7 3LU 23 3LU O8 O8 O 0 1 N N N 31.399 6.048 -0.776 -4.594 3.410 -0.132 O8 3LU 24 3LU C13 C13 C 0 1 N N R 26.883 6.707 -2.727 0.422 0.690 0.478 C13 3LU 25 3LU C14 C14 C 0 1 N N N 27.043 5.600 -3.735 0.074 -0.213 1.634 C14 3LU 26 3LU C15 C15 C 0 1 N N N 30.145 7.840 -1.618 -3.213 1.393 -0.154 C15 3LU 27 3LU C16 C16 C 0 1 N N N 30.388 9.391 0.286 -5.136 0.754 -1.456 C16 3LU 28 3LU H1 H1 H 0 1 N N N 26.257 10.323 2.590 7.245 2.386 -2.530 H1 3LU 29 3LU H2 H2 H 0 1 N N N 28.107 9.634 4.081 8.238 2.864 -0.329 H2 3LU 30 3LU H3 H3 H 0 1 N N N 28.902 7.283 4.071 7.256 1.883 1.705 H3 3LU 31 3LU H4 H4 H 0 1 N N N 26.483 5.141 0.828 3.638 -0.387 -1.738 H4 3LU 32 3LU H5 H5 H 0 1 N N N 28.085 8.007 -3.944 -0.550 1.488 -1.277 H5 3LU 33 3LU H6 H6 H 0 1 N N N 29.543 10.307 -2.811 -3.450 -1.228 -2.128 H6 3LU 34 3LU H7 H7 H 0 1 N N N 28.964 10.993 -1.255 -2.582 0.130 -2.884 H7 3LU 35 3LU H9 H9 H 0 1 N N N 25.221 8.680 1.067 5.259 0.939 -2.697 H9 3LU 36 3LU H10 H10 H 0 1 N N N 27.569 5.677 -0.989 1.335 -0.441 -1.069 H10 3LU 37 3LU H11 H11 H 0 1 N N N 27.839 5.646 2.560 5.276 0.428 1.537 H11 3LU 38 3LU H12 H12 H 0 1 N N N 26.708 3.890 -4.210 -1.100 -0.484 3.203 H12 3LU 39 3LU H13 H13 H 0 1 N N N 32.289 5.733 -0.669 -5.234 3.966 0.332 H13 3LU 40 3LU H14 H14 H 0 1 N N N 25.934 7.216 -2.950 0.724 1.666 0.858 H14 3LU 41 3LU H15 H15 H 0 1 N N N 29.529 9.599 0.941 -5.276 0.646 -2.532 H15 3LU 42 3LU N2 N2 N 1 1 Y N N 31.034 10.280 0.234 -5.879 -0.299 -0.759 N2 3LU 43 3LU H17 H17 H 0 1 N N N 30.961 8.544 0.691 -5.503 1.730 -1.138 H17 3LU 44 3LU H8 H8 H 0 1 N N N 24.141 4.847 3.255 4.955 -2.464 1.917 H8 3LU 45 3LU C19 C19 C 0 1 Y N N ? ? ? -6.461 -0.020 0.391 C19 3LU 46 3LU C17 C17 C 0 1 Y N N ? ? ? -7.171 -0.987 1.077 C17 3LU 47 3LU C20 C20 C 0 1 Y N N ? ? ? -7.266 -2.263 0.541 C20 3LU 48 3LU C21 C21 C 0 1 Y N N ? ? ? -6.641 -2.518 -0.670 C21 3LU 49 3LU C22 C22 C 0 1 Y N N ? ? ? -5.952 -1.499 -1.301 C22 3LU 50 3LU H16 H16 H 0 1 N N N ? ? ? -6.383 0.976 0.801 H16 3LU 51 3LU H18 H18 H 0 1 N N N ? ? ? -7.645 -0.753 2.018 H18 3LU 52 3LU H19 H19 H 0 1 N N N ? ? ? -7.813 -3.039 1.055 H19 3LU 53 3LU H20 H20 H 0 1 N N N ? ? ? -6.693 -3.500 -1.116 H20 3LU 54 3LU H21 H21 H 0 1 N N N ? ? ? -5.463 -1.689 -2.244 H21 3LU 55 3LU H22 H22 H 0 1 N N N 29.012 6.373 -1.896 -1.735 1.872 1.182 H22 3LU 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3LU O6 C14 DOUB N N 1 3LU C14 O5 SING N N 2 3LU C14 C13 SING N N 3 3LU C7 C13 SING N N 4 3LU C7 N3 SING N N 5 3LU C7 S2 SING N N 6 3LU C13 N1 SING N N 7 3LU N3 C15 SING N N 8 3LU S2 C9 SING N N 9 3LU C9 C10 SING N N 10 3LU O7 C8 DOUB N N 11 3LU C15 C8 SING N N 12 3LU C15 C10 DOUB N N 13 3LU N1 C6 SING N N 14 3LU C8 O8 SING N N 15 3LU C10 C16 SING N N 16 3LU O4 C6 DOUB N N 17 3LU C6 C5 SING N N 18 3LU O3 S1 DOUB N N 19 3LU C5 S1 SING N N 20 3LU C5 C4 SING N N 21 3LU S1 O2 DOUB N N 22 3LU S1 O1 SING N N 23 3LU C4 C11 DOUB Y N 24 3LU C4 C12 SING Y N 25 3LU C11 C1 SING Y N 26 3LU C12 C3 DOUB Y N 27 3LU C1 C2 DOUB Y N 28 3LU C3 C2 SING Y N 29 3LU C1 H1 SING N N 30 3LU C2 H2 SING N N 31 3LU C3 H3 SING N N 32 3LU C5 H4 SING N N 33 3LU C7 H5 SING N N 34 3LU C9 H6 SING N N 35 3LU C9 H7 SING N N 36 3LU C11 H9 SING N N 37 3LU N1 H10 SING N N 38 3LU C12 H11 SING N N 39 3LU O5 H12 SING N N 40 3LU O8 H13 SING N N 41 3LU C13 H14 SING N N 42 3LU C16 H15 SING N N 43 3LU C16 N2 SING N N 44 3LU C16 H17 SING N N 45 3LU O1 H8 SING N N 46 3LU N2 C19 SING Y N 47 3LU C19 C17 DOUB Y N 48 3LU C17 C20 SING Y N 49 3LU C20 C21 DOUB Y N 50 3LU C21 C22 SING Y N 51 3LU C22 N2 DOUB Y N 52 3LU C19 H16 SING N N 53 3LU C17 H18 SING N N 54 3LU C20 H19 SING N N 55 3LU C21 H20 SING N N 56 3LU C22 H21 SING N N 57 3LU N3 H22 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3LU SMILES ACDLabs 12.01 "O=S(=O)(O)C(c1ccccc1)C(=O)NC(C(=O)O)C2SCC(=C(N2)C(=O)O)C[n+]3ccccc3" 3LU InChI InChI 1.03 "InChI=1S/C21H21N3O8S2/c25-18(17(34(30,31)32)13-7-3-1-4-8-13)22-16(21(28)29)19-23-15(20(26)27)14(12-33-19)11-24-9-5-2-6-10-24/h1-10,16-17,19,23H,11-12H2,(H3-,22,25,26,27,28,29,30,31,32)/p+1/t16-,17+,19+/m0/s1" 3LU InChIKey InChI 1.03 UZIDEBFKNVWIPU-YQVWRLOYSA-O 3LU SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H](NC(=O)[C@@H](c1ccccc1)[S](O)(=O)=O)[C@@H]2NC(=C(CS2)C[n+]3ccccc3)C(O)=O" 3LU SMILES CACTVS 3.385 "OC(=O)[CH](NC(=O)[CH](c1ccccc1)[S](O)(=O)=O)[CH]2NC(=C(CS2)C[n+]3ccccc3)C(O)=O" 3LU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)[C@H](C(=O)N[C@@H]([C@@H]2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O)S(=O)(=O)O" 3LU SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(C(=O)NC(C2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O)S(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3LU "SYSTEMATIC NAME" ACDLabs 12.01 "1-({(2R)-4-carboxy-2-[(R)-carboxy{[(2R)-2-phenyl-2-sulfoacetyl]amino}methyl]-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyridinium" 3LU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-[[(2R)-2-phenyl-2-sulfo-ethanoyl]amino]ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3LU "Create component" 2014-09-19 RCSB 3LU "Other modification" 2014-09-23 RCSB 3LU "Other modification" 2014-12-11 RCSB 3LU "Initial release" 2015-07-01 RCSB 3LU "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3LU _pdbx_chem_comp_synonyms.name "Cefsulodin, bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##