data_3OD # _chem_comp.id 3OD _chem_comp.name "(2S,3S,4R,5S)-2-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-4,5-DIHYDROXYTETRAHYDROFURAN-3-YL ACETATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H25 N5 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-05-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 601.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3OD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2H59 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3OD O15 O15 O 0 1 N N N -7.759 -11.813 -22.463 8.716 -0.151 -2.266 O15 3OD 1 3OD C16 C16 C 0 1 N N N -8.717 -11.648 -23.217 7.806 0.643 -2.222 C16 3OD 2 3OD C17 C17 C 0 1 N N N -9.587 -12.800 -23.632 7.437 1.435 -3.450 C17 3OD 3 3OD O13 O13 O 0 1 N N N -8.959 -10.322 -23.798 7.124 0.820 -1.080 O13 3OD 4 3OD C13 C13 C 0 1 N N S -10.077 -9.437 -23.632 7.480 0.058 0.104 C13 3OD 5 3OD C14 C14 C 0 1 N N R -11.350 -9.944 -22.961 8.459 0.854 1.001 C14 3OD 6 3OD O10 O10 O 0 1 N N N -11.011 -11.005 -22.105 9.129 1.860 0.239 O10 3OD 7 3OD C15 C15 C 0 1 N N S -11.764 -8.786 -22.061 7.554 1.496 2.070 C15 3OD 8 3OD O14 O14 O 0 1 N N N -12.561 -9.283 -20.981 7.697 2.918 2.036 O14 3OD 9 3OD O12 O12 O 0 1 N N N -10.554 -8.095 -21.628 6.199 1.131 1.759 O12 3OD 10 3OD C12 C12 C 0 1 N N S -9.754 -8.223 -22.802 6.254 -0.119 1.036 C12 3OD 11 3OD C11 C11 C 0 1 N N N -8.337 -7.784 -22.661 4.977 -0.327 0.221 C11 3OD 12 3OD O11 O11 O 0 1 N N N -8.660 -6.532 -23.276 3.869 -0.500 1.107 O11 3OD 13 3OD P2 P2 P 0 1 N N S -7.924 -5.800 -24.501 2.565 -0.712 0.186 P2 3OD 14 3OD O8 O8 O 0 1 N N N -7.097 -4.783 -23.778 2.277 0.631 -0.654 O8 3OD 15 3OD O9 O9 O 0 1 N N N -7.422 -6.879 -25.392 2.799 -1.836 -0.748 O9 3OD 16 3OD O7 O7 O 0 1 N N N -9.153 -4.976 -25.188 1.297 -1.044 1.120 O7 3OD 17 3OD P1 P1 P 0 1 N N S -9.768 -3.534 -24.922 0.199 -1.752 0.179 P1 3OD 18 3OD O2 O2 O 0 1 N N N -9.958 -3.300 -23.447 0.582 -3.303 -0.020 O2 3OD 19 3OD O1 O1 O 0 1 N N N -10.949 -3.476 -25.872 0.170 -1.078 -1.139 O1 3OD 20 3OD O3 O3 O 0 1 N N N -8.732 -2.487 -25.476 -1.251 -1.641 0.870 O3 3OD 21 3OD C1 C1 C 0 1 N N N -8.483 -2.373 -26.872 -2.194 -2.178 -0.061 C1 3OD 22 3OD C2 C2 C 0 1 N N R -7.677 -1.130 -27.077 -3.600 -2.102 0.537 C2 3OD 23 3OD C3 C3 C 0 1 N N S -8.545 0.091 -26.775 -4.609 -2.784 -0.407 C3 3OD 24 3OD O5 O5 O 0 1 N N N -7.857 1.053 -25.973 -5.257 -3.877 0.247 O5 3OD 25 3OD C4 C4 C 0 1 N N R -8.871 0.633 -28.135 -5.631 -1.665 -0.738 C4 3OD 26 3OD O6 O6 O 0 1 N N N -9.009 2.034 -28.179 -6.964 -2.179 -0.744 O6 3OD 27 3OD C5 C5 C 0 1 N N R -7.530 0.298 -28.853 -5.424 -0.678 0.439 C5 3OD 28 3OD O4 O4 O 0 1 N N N -7.269 -1.037 -28.448 -4.000 -0.728 0.674 O4 3OD 29 3OD N1 N1 N 0 1 Y N N -7.689 0.098 -30.271 -5.837 0.675 0.061 N1 3OD 30 3OD C10 C10 C 0 1 Y N N -6.732 0.373 -31.190 -7.095 1.207 0.194 C10 3OD 31 3OD C7 C7 C 0 1 Y N N -7.275 -0.051 -32.464 -7.013 2.522 -0.295 C7 3OD 32 3OD N2 N2 N 0 1 Y N N -8.495 -0.565 -32.200 -5.736 2.718 -0.702 N2 3OD 33 3OD C6 C6 C 0 1 Y N N -8.750 -0.472 -30.871 -5.044 1.635 -0.494 C6 3OD 34 3OD N5 N5 N 0 1 Y N N -5.476 0.875 -31.119 -8.256 0.764 0.665 N5 3OD 35 3OD C9 C9 C 0 1 Y N N -4.743 1.044 -32.259 -9.320 1.540 0.665 C9 3OD 36 3OD N4 N4 N 0 1 Y N N -5.182 0.662 -33.480 -9.293 2.780 0.211 N4 3OD 37 3OD C8 C8 C 0 1 Y N N -6.416 0.091 -33.662 -8.175 3.311 -0.274 C8 3OD 38 3OD N3 N3 N 0 1 N N N -6.894 -0.277 -34.890 -8.157 4.611 -0.748 N3 3OD 39 3OD H171 1H17 H 0 0 N N N -10.532 -12.767 -23.069 8.097 1.157 -4.273 H171 3OD 40 3OD H172 2H17 H 0 0 N N N -9.067 -13.746 -23.422 6.404 1.220 -3.724 H172 3OD 41 3OD H173 3H17 H 0 0 N N N -9.800 -12.730 -24.709 7.544 2.499 -3.242 H173 3OD 42 3OD H13 H13 H 0 1 N N N -10.271 -9.263 -24.701 7.902 -0.909 -0.171 H13 3OD 43 3OD H14 H14 H 0 1 N N N -12.115 -10.264 -23.684 9.182 0.183 1.465 H14 3OD 44 3OD HO10 HO10 H 0 0 N N N -10.934 -11.807 -22.609 9.723 2.321 0.847 HO10 3OD 45 3OD H15 H15 H 0 1 N N N -12.392 -8.055 -22.592 7.822 1.120 3.057 H15 3OD 46 3OD HO14 HO14 H 0 0 N N N -12.017 -9.393 -20.210 7.113 3.273 2.721 HO14 3OD 47 3OD H12 H12 H 0 1 N N N -10.084 -7.431 -23.490 6.410 -0.952 1.722 H12 3OD 48 3OD H111 1H11 H 0 0 N N N -7.525 -8.404 -23.067 4.804 0.544 -0.412 H111 3OD 49 3OD H112 2H11 H 0 0 N N N -7.936 -7.739 -21.638 5.084 -1.214 -0.404 H112 3OD 50 3OD HO8 HO8 H 0 1 N N N -6.922 -5.086 -22.895 2.131 1.337 -0.009 HO8 3OD 51 3OD HO2 HO2 H 0 1 N N N -9.998 -4.135 -22.996 0.589 -3.704 0.860 HO2 3OD 52 3OD H11 1H1 H 0 1 N N N -9.428 -2.322 -27.433 -2.161 -1.601 -0.985 H11 3OD 53 3OD H12A 2H1 H 0 0 N N N -7.927 -3.251 -27.232 -1.944 -3.217 -0.272 H12A 3OD 54 3OD H2 H2 H 0 1 N N N -6.800 -1.165 -26.414 -3.615 -2.592 1.511 H2 3OD 55 3OD H3 H3 H 0 1 N N N -9.441 -0.163 -26.190 -4.110 -3.126 -1.315 H3 3OD 56 3OD HO5 HO5 H 0 1 N N N -7.704 0.693 -25.107 -5.916 -4.222 -0.372 HO5 3OD 57 3OD H4 H4 H 0 1 N N N -9.814 0.231 -28.534 -5.395 -1.190 -1.690 H4 3OD 58 3OD HO6 HO6 H 0 1 N N N -9.040 2.378 -27.294 -7.028 -2.784 -1.496 HO6 3OD 59 3OD H5 H5 H 0 1 N N N -6.804 1.095 -28.634 -5.970 -1.013 1.321 H5 3OD 60 3OD H6 H6 H 0 1 N N N -9.653 -0.800 -30.377 -3.996 1.515 -0.726 H6 3OD 61 3OD H9 H9 H 0 1 N N N -3.769 1.503 -32.182 -10.249 1.148 1.051 H9 3OD 62 3OD HN31 1HN3 H 0 0 N N N -6.407 -0.200 -35.760 -7.335 4.988 -1.100 HN31 3OD 63 3OD HN32 2HN3 H 0 0 N N N -7.818 -0.637 -34.761 -8.966 5.146 -0.728 HN32 3OD 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3OD O15 C16 DOUB N N 1 3OD C16 C17 SING N N 2 3OD C16 O13 SING N N 3 3OD C17 H171 SING N N 4 3OD C17 H172 SING N N 5 3OD C17 H173 SING N N 6 3OD O13 C13 SING N N 7 3OD C13 C14 SING N N 8 3OD C13 C12 SING N N 9 3OD C13 H13 SING N N 10 3OD C14 O10 SING N N 11 3OD C14 C15 SING N N 12 3OD C14 H14 SING N N 13 3OD O10 HO10 SING N N 14 3OD C15 O14 SING N N 15 3OD C15 O12 SING N N 16 3OD C15 H15 SING N N 17 3OD O14 HO14 SING N N 18 3OD O12 C12 SING N N 19 3OD C12 C11 SING N N 20 3OD C12 H12 SING N N 21 3OD C11 O11 SING N N 22 3OD C11 H111 SING N N 23 3OD C11 H112 SING N N 24 3OD O11 P2 SING N N 25 3OD P2 O8 SING N N 26 3OD P2 O9 DOUB N N 27 3OD P2 O7 SING N N 28 3OD O8 HO8 SING N N 29 3OD O7 P1 SING N N 30 3OD P1 O2 SING N N 31 3OD P1 O1 DOUB N N 32 3OD P1 O3 SING N N 33 3OD O2 HO2 SING N N 34 3OD O3 C1 SING N N 35 3OD C1 C2 SING N N 36 3OD C1 H11 SING N N 37 3OD C1 H12A SING N N 38 3OD C2 C3 SING N N 39 3OD C2 O4 SING N N 40 3OD C2 H2 SING N N 41 3OD C3 O5 SING N N 42 3OD C3 C4 SING N N 43 3OD C3 H3 SING N N 44 3OD O5 HO5 SING N N 45 3OD C4 O6 SING N N 46 3OD C4 C5 SING N N 47 3OD C4 H4 SING N N 48 3OD O6 HO6 SING N N 49 3OD C5 O4 SING N N 50 3OD C5 N1 SING N N 51 3OD C5 H5 SING N N 52 3OD N1 C10 SING Y N 53 3OD N1 C6 SING Y N 54 3OD C10 C7 DOUB Y N 55 3OD C10 N5 SING Y N 56 3OD C7 N2 SING Y N 57 3OD C7 C8 SING Y N 58 3OD N2 C6 DOUB Y N 59 3OD C6 H6 SING N N 60 3OD N5 C9 DOUB Y N 61 3OD C9 N4 SING Y N 62 3OD C9 H9 SING N N 63 3OD N4 C8 DOUB Y N 64 3OD C8 N3 SING N N 65 3OD N3 HN31 SING N N 66 3OD N3 HN32 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3OD SMILES ACDLabs 10.04 "O=P(O)(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)OP(=O)(O)OCC4OC(O)C(O)C4OC(=O)C" 3OD SMILES_CANONICAL CACTVS 3.341 "CC(=O)O[C@H]1[C@@H](O)[C@@H](O)O[C@H]1CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" 3OD SMILES CACTVS 3.341 "CC(=O)O[CH]1[CH](O)[CH](O)O[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" 3OD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)O[C@@H]1[C@@H](O[C@@H]([C@@H]1O)O)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 3OD SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)OC1C(OC(C1O)O)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" 3OD InChI InChI 1.03 "InChI=1S/C17H25N5O15P2/c1-6(23)34-13-8(36-17(27)12(13)26)3-33-39(30,31)37-38(28,29)32-2-7-10(24)11(25)16(35-7)22-5-21-9-14(18)19-4-20-15(9)22/h4-5,7-8,10-13,16-17,24-27H,2-3H2,1H3,(H,28,29)(H,30,31)(H2,18,19,20)/t7-,8+,10-,11-,12-,13-,16-,17+/m1/s1" 3OD InChIKey InChI 1.03 HNHCIVXQBMBKPQ-ARMUENPQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3OD "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S,4R,5S)-2-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-4,5-dihydroxytetrahydrofuran-3-yl acetate (non-preferred name)" 3OD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,4R,5S)-2-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxymethyl]-4,5-dihydroxy-oxolan-3-yl] ethanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3OD "Create component" 2006-05-26 RCSB 3OD "Modify descriptor" 2011-06-04 RCSB #