data_3PT
#
_chem_comp.id 3PT
_chem_comp.name "(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H33 O19 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-07-10
_chem_comp.pdbx_modified_date 2012-08-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 634.354
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3PT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4FYG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3PT O0H O0H O 0 1 N N N 8.487 34.356 6.383 -5.669 0.791 -1.794 O0H 3PT 1
3PT C0G C0G C 0 1 N N N 8.048 34.935 5.385 -5.234 1.518 -0.933 C0G 3PT 2
3PT C0I C0I C 0 1 N N N 8.991 35.235 4.229 -5.260 3.013 -1.124 C0I 3PT 3
3PT C0J C0J C 0 1 N N N 10.430 34.908 4.628 -5.884 3.342 -2.481 C0J 3PT 4
3PT C0K C0K C 0 1 N N N 11.154 34.224 3.497 -5.910 4.860 -2.675 C0K 3PT 5
3PT O0D O0D O 0 1 N N N 6.600 35.239 5.339 -4.732 0.994 0.197 O0D 3PT 6
3PT C0C C0C C 0 1 N N R 6.002 36.551 5.170 -4.744 -0.453 0.315 C0C 3PT 7
3PT C0E C0E C 0 1 N N N 6.084 37.066 3.723 -6.055 -0.900 0.965 C0E 3PT 8
3PT O0F O0F O 0 1 N N N 6.356 36.007 2.781 -7.166 -0.576 0.088 O0F 3PT 9
3PT C0L C0L C 0 1 N N N 5.585 34.755 2.677 -8.395 -0.906 0.515 C0L 3PT 10
3PT C0N C0N C 0 1 N N N 6.258 33.371 2.737 -9.597 -0.601 -0.342 C0N 3PT 11
3PT C0P C0P C 0 1 N N N 5.452 32.262 3.450 -10.865 -1.075 0.371 C0P 3PT 12
3PT C0Q C0Q C 0 1 N N N 6.280 31.256 4.250 -12.085 -0.765 -0.499 C0Q 3PT 13
3PT O0M O0M O 0 1 N N N 4.375 34.856 2.529 -8.538 -1.446 1.586 O0M 3PT 14
3PT C0B C0B C 0 1 N N N 6.484 37.525 6.240 -3.566 -0.904 1.180 C0B 3PT 15
3PT OP1 OP1 O 0 1 N N N 5.977 37.045 7.487 -2.340 -0.590 0.516 OP1 3PT 16
3PT P1 P1 P 0 1 N N N 5.343 37.897 8.728 -0.894 -0.924 1.140 P1 3PT 17
3PT OP3 OP3 O 0 1 N N N 5.728 37.273 10.067 -0.676 -0.061 2.481 OP3 3PT 18
3PT OP2 OP2 O 0 1 N N N 5.558 39.378 8.527 -0.818 -2.367 1.464 OP2 3PT 19
3PT O1 O1 O 0 1 N N N 3.795 37.458 8.552 0.251 -0.553 0.071 O1 3PT 20
3PT C1 C1 C 0 1 N N S 2.686 38.325 8.350 1.636 -0.831 0.286 C1 3PT 21
3PT C2 C2 C 0 1 N N S 1.881 38.427 9.642 2.429 0.477 0.259 C2 3PT 22
3PT O2 O2 O 0 1 N N N 1.596 37.092 10.090 2.261 1.110 -1.011 O2 3PT 23
3PT C3 C3 C 0 1 N N S 0.557 39.181 9.446 3.912 0.180 0.489 C3 3PT 24
3PT O3 O3 O 0 1 N N N -0.244 39.085 10.640 4.652 1.402 0.465 O3 3PT 25
3PT P3 P3 P 0 1 N N N -0.087 40.007 11.960 5.521 1.926 1.714 P3 3PT 26
3PT O12 O12 O 0 1 N N N 1.350 39.959 12.463 4.542 2.257 2.948 O12 3PT 27
3PT O10 O10 O 0 1 N N N -0.527 41.298 11.379 6.486 0.879 2.118 O10 3PT 28
3PT O11 O11 O 0 1 N N N -1.089 39.402 12.896 6.320 3.258 1.291 O11 3PT 29
3PT C4 C4 C 0 1 N N S -0.261 38.509 8.342 4.423 -0.749 -0.614 C4 3PT 30
3PT O4 O4 O 0 1 N N N -1.477 39.204 8.079 5.808 -1.026 -0.399 O4 3PT 31
3PT P4 P4 P 0 1 N N N -2.881 38.412 8.065 6.953 -0.655 -1.469 P4 3PT 32
3PT OP4 OP4 O 0 1 N N N -2.538 37.001 7.660 7.044 0.945 -1.624 OP4 3PT 33
3PT OP6 OP6 O 0 1 N N N -3.398 38.531 9.475 8.369 -1.227 -0.959 OP6 3PT 34
3PT OP5 OP5 O 0 1 N N N -3.682 39.143 7.026 6.620 -1.260 -2.778 OP5 3PT 35
3PT C5 C5 C 0 1 N N R 0.476 38.181 7.039 3.630 -2.057 -0.588 C5 3PT 36
3PT O5 O5 O 0 1 N N N -0.264 37.101 6.491 4.108 -2.924 -1.618 O5 3PT 37
3PT C6 C6 C 0 1 N N R 1.879 37.628 7.256 2.147 -1.760 -0.818 C6 3PT 38
3PT O6 O6 O 0 1 N N N 2.619 37.621 6.035 1.407 -2.982 -0.793 O6 3PT 39
3PT H1 H1 H 0 1 N N N 8.919 36.301 3.968 -5.852 3.470 -0.331 H1 3PT 40
3PT H2 H2 H 0 1 N N N 8.707 34.624 3.359 -4.242 3.401 -1.087 H2 3PT 41
3PT H3 H3 H 0 1 N N N 10.420 34.243 5.504 -5.291 2.885 -3.274 H3 3PT 42
3PT H4 H4 H 0 1 N N N 10.955 35.841 4.881 -6.901 2.954 -2.518 H4 3PT 43
3PT H5 H5 H 0 1 N N N 12.186 33.998 3.805 -6.354 5.095 -3.643 H5 3PT 44
3PT H6 H6 H 0 1 N N N 10.634 33.289 3.242 -6.502 5.317 -1.883 H6 3PT 45
3PT H7 H7 H 0 1 N N N 11.170 34.886 2.619 -4.892 5.248 -2.639 H7 3PT 46
3PT H8 H8 H 0 1 N N N 4.927 36.420 5.365 -4.660 -0.899 -0.676 H8 3PT 47
3PT H9 H9 H 0 1 N N N 6.889 37.813 3.658 -6.028 -1.976 1.135 H9 3PT 48
3PT H10 H10 H 0 1 N N N 5.125 37.536 3.460 -6.182 -0.385 1.918 H10 3PT 49
3PT H11 H11 H 0 1 N N N 6.445 33.042 1.704 -9.657 0.474 -0.515 H11 3PT 50
3PT H12 H12 H 0 1 N N N 7.216 33.484 3.265 -9.502 -1.118 -1.297 H12 3PT 51
3PT H13 H13 H 0 1 N N N 4.747 32.747 4.142 -10.805 -2.149 0.544 H13 3PT 52
3PT H14 H14 H 0 1 N N N 4.891 31.706 2.685 -10.960 -0.558 1.326 H14 3PT 53
3PT H15 H15 H 0 1 N N N 5.611 30.516 4.713 -11.991 -1.282 -1.454 H15 3PT 54
3PT H16 H16 H 0 1 N N N 6.984 30.744 3.578 -12.988 -1.103 0.009 H16 3PT 55
3PT H17 H17 H 0 1 N N N 6.841 31.785 5.035 -12.145 0.309 -0.672 H17 3PT 56
3PT H18 H18 H 0 1 N N N 7.583 37.551 6.262 -3.602 -0.389 2.140 H18 3PT 57
3PT H19 H19 H 0 1 N N N 6.097 38.534 6.036 -3.625 -1.980 1.342 H19 3PT 58
3PT H20 H20 H 0 1 N N N 6.078 37.944 10.641 -0.713 0.895 2.344 H20 3PT 59
3PT H21 H21 H 0 1 N N N 3.001 39.324 8.015 1.764 -1.314 1.255 H21 3PT 60
3PT H22 H22 H 0 1 N N N 2.482 38.958 10.395 2.064 1.138 1.045 H22 3PT 61
3PT H23 H23 H 0 1 N N N 1.094 37.128 10.896 1.344 1.328 -1.224 H23 3PT 62
3PT H24 H24 H 0 1 N N N 0.758 40.230 9.182 4.039 -0.303 1.458 H24 3PT 63
3PT H25 H25 H 0 1 N N N 1.764 40.802 12.321 3.882 2.936 2.755 H25 3PT 64
3PT H26 H26 H 0 1 N N N -1.850 39.967 12.954 6.867 3.630 1.997 H26 3PT 65
3PT H27 H27 H 0 1 N N N -0.551 37.533 8.757 4.295 -0.266 -1.583 H27 3PT 66
3PT H28 H28 H 0 1 N N N -2.898 36.822 6.799 7.260 1.408 -0.803 H28 3PT 67
3PT H29 H29 H 0 1 N N N -4.179 39.071 9.482 9.107 -1.040 -1.555 H29 3PT 68
3PT H30 H30 H 0 1 N N N 0.498 39.056 6.373 3.758 -2.540 0.381 H30 3PT 69
3PT H31 H31 H 0 1 N N N -1.158 37.379 6.329 3.649 -3.774 -1.661 H31 3PT 70
3PT H32 H32 H 0 1 N N N 1.756 36.583 7.577 2.020 -1.277 -1.787 H32 3PT 71
3PT H33 H33 H 0 1 N N N 3.489 37.273 6.193 1.678 -3.619 -1.468 H33 3PT 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3PT O0M C0L DOUB N N 1
3PT C0L C0N SING N N 2
3PT C0L O0F SING N N 3
3PT C0N C0P SING N N 4
3PT O0F C0E SING N N 5
3PT C0P C0Q SING N N 6
3PT C0K C0J SING N N 7
3PT C0E C0C SING N N 8
3PT C0I C0J SING N N 9
3PT C0I C0G SING N N 10
3PT C0C O0D SING N N 11
3PT C0C C0B SING N N 12
3PT O0D C0G SING N N 13
3PT C0G O0H DOUB N N 14
3PT O6 C6 SING N N 15
3PT C0B OP1 SING N N 16
3PT O5 C5 SING N N 17
3PT OP5 P4 DOUB N N 18
3PT C5 C6 SING N N 19
3PT C5 C4 SING N N 20
3PT C6 C1 SING N N 21
3PT OP1 P1 SING N N 22
3PT OP4 P4 SING N N 23
3PT P4 O4 SING N N 24
3PT P4 OP6 SING N N 25
3PT O4 C4 SING N N 26
3PT C4 C3 SING N N 27
3PT C1 O1 SING N N 28
3PT C1 C2 SING N N 29
3PT OP2 P1 DOUB N N 30
3PT O1 P1 SING N N 31
3PT P1 OP3 SING N N 32
3PT C3 C2 SING N N 33
3PT C3 O3 SING N N 34
3PT C2 O2 SING N N 35
3PT O3 P3 SING N N 36
3PT O10 P3 DOUB N N 37
3PT P3 O12 SING N N 38
3PT P3 O11 SING N N 39
3PT C0I H1 SING N N 40
3PT C0I H2 SING N N 41
3PT C0J H3 SING N N 42
3PT C0J H4 SING N N 43
3PT C0K H5 SING N N 44
3PT C0K H6 SING N N 45
3PT C0K H7 SING N N 46
3PT C0C H8 SING N N 47
3PT C0E H9 SING N N 48
3PT C0E H10 SING N N 49
3PT C0N H11 SING N N 50
3PT C0N H12 SING N N 51
3PT C0P H13 SING N N 52
3PT C0P H14 SING N N 53
3PT C0Q H15 SING N N 54
3PT C0Q H16 SING N N 55
3PT C0Q H17 SING N N 56
3PT C0B H18 SING N N 57
3PT C0B H19 SING N N 58
3PT OP3 H20 SING N N 59
3PT C1 H21 SING N N 60
3PT C2 H22 SING N N 61
3PT O2 H23 SING N N 62
3PT C3 H24 SING N N 63
3PT O12 H25 SING N N 64
3PT O11 H26 SING N N 65
3PT C4 H27 SING N N 66
3PT OP4 H28 SING N N 67
3PT OP6 H29 SING N N 68
3PT C5 H30 SING N N 69
3PT O5 H31 SING N N 70
3PT C6 H32 SING N N 71
3PT O6 H33 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3PT SMILES ACDLabs 12.01 "O=C(OCC(OC(=O)CCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)C1O)CCC"
3PT InChI InChI 1.03
"InChI=1S/C17H33O19P3/c1-3-5-10(18)31-7-9(33-11(19)6-4-2)8-32-39(29,30)36-15-12(20)13(21)16(34-37(23,24)25)17(14(15)22)35-38(26,27)28/h9,12-17,20-22H,3-8H2,1-2H3,(H,29,30)(H2,23,24,25)(H2,26,27,28)/t9-,12-,13-,14+,15+,16+,17+/m1/s1"
3PT InChIKey InChI 1.03 DHAFWWKSHUBGAH-DXOPXGNRSA-N
3PT SMILES_CANONICAL CACTVS 3.370 "CCCC(=O)OC[C@H](CO[P](O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]1O)OC(=O)CCC"
3PT SMILES CACTVS 3.370 "CCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O)OC(=O)CCC"
3PT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC(=O)OC[C@H](COP(=O)(O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@H]1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCC"
3PT SMILES "OpenEye OEToolkits" 1.7.6 "CCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCC"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3PT "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate"
3PT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2-butanoyloxy-3-[oxidanyl-[(1S,2R,3R,4S,5S,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] butanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3PT "Create component" 2012-07-10 RCSB
#