data_3RD
#
_chem_comp.id 3RD
_chem_comp.name "4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H14 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms FOBISIN101
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-05-21
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.261
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3RD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3RDH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3RD N1 N1 N 0 1 N Y N N N N -84.616 62.276 7.982 1.166 -1.729 -0.110 N1 3RD 1
3RD C1 C1 C 0 1 Y N N N N N -82.731 66.186 10.676 -3.675 -2.210 -0.022 C1 3RD 2
3RD C2 C2 C 0 1 Y N N N N N -83.861 65.326 10.813 -2.589 -3.033 -0.310 C2 3RD 3
3RD N2 N2 N 0 1 Y N N N N N -84.093 64.344 9.894 -1.359 -2.580 -0.237 N2 3RD 4
3RD C3 C3 C 0 1 Y N N N N N -83.286 64.119 8.812 -1.087 -1.326 0.112 C3 3RD 5
3RD C4 C4 C 0 1 Y N N N N N -82.112 64.927 8.575 -2.113 -0.431 0.418 C4 3RD 6
3RD C5 C5 C 0 1 Y N N N N N -81.850 65.985 9.546 -3.439 -0.871 0.347 C5 3RD 7
3RD C6 C6 C 0 1 N N N N N N -80.612 66.933 9.402 -4.556 0.035 0.661 C6 3RD 8
3RD O1 O1 O 0 1 N N N N N N -80.125 67.477 10.412 -5.698 -0.365 0.594 O1 3RD 9
3RD O2 O2 O 0 1 N N N N N N -82.506 67.173 11.604 -4.940 -2.688 -0.101 O2 3RD 10
3RD C7 C7 C 0 1 N N N N N N -84.839 65.475 11.989 -2.830 -4.465 -0.712 C7 3RD 11
3RD C8 C8 C 0 1 N N N N N N -81.176 64.682 7.356 -1.798 0.989 0.813 C8 3RD 12
3RD O3 O3 O 0 1 N N N N N N -80.442 63.588 7.954 -1.759 1.811 -0.355 O3 3RD 13
3RD P1 P1 P 0 1 N N N N N N -79.227 62.634 7.478 -1.449 3.390 -0.306 P1 3RD 14
3RD O4 O4 O 0 1 N N N N N N -78.655 63.052 6.178 -0.163 3.619 0.391 O4 3RD 15
3RD O5 O5 O 0 1 N N N N N N -79.935 61.190 7.299 -1.356 3.966 -1.806 O5 3RD 16
3RD O6 O6 O 0 1 N N N N N N -78.137 62.532 8.659 -2.630 4.145 0.486 O6 3RD 17
3RD N3 N3 N 0 1 N N N N N N -83.747 63.104 8.080 0.211 -0.909 0.171 N3 3RD 18
3RD H1 H1 H 0 1 N N N N N N -80.181 67.115 8.429 -4.357 1.056 0.951 H1 3RD 19
3RD H2 H2 H 0 1 N Y N N N N -81.645 67.550 11.463 -5.267 -3.071 0.725 H2 3RD 20
3RD H3 H3 H 0 1 N N N N N N -85.631 64.716 11.906 -2.934 -4.526 -1.796 H3 3RD 21
3RD H4 H4 H 0 1 N N N N N N -84.297 65.337 12.936 -1.987 -5.079 -0.394 H4 3RD 22
3RD H5 H5 H 0 1 N N N N N N -85.289 66.479 11.967 -3.742 -4.827 -0.239 H5 3RD 23
3RD H6 H6 H 0 1 N N N N N N -81.702 64.420 6.426 -2.569 1.357 1.491 H6 3RD 24
3RD H7 H7 H 0 1 N N N N N N -80.555 65.547 7.080 -0.830 1.021 1.313 H7 3RD 25
3RD H8 H8 H 0 1 N N N N N N -79.842 60.901 6.399 -1.171 4.914 -1.853 H8 3RD 26
3RD H9 H9 H 0 1 N N N N N N -77.280 62.763 8.320 -3.503 4.038 0.085 H9 3RD 27
3RD C9 C9 C 0 1 Y Y N N N N -84.607 61.331 6.856 2.465 -1.312 -0.051 C9 3RD 28
3RD C10 C10 C 0 1 Y Y N N N N -86.003 60.762 7.173 3.501 -2.202 -0.355 C10 3RD 29
3RD C11 C11 C 0 1 Y Y N N N N -86.581 59.619 6.318 4.809 -1.781 -0.295 C11 3RD 30
3RD C12 C12 C 0 1 Y Y N N N N -85.763 59.044 5.147 5.104 -0.464 0.071 C12 3RD 31
3RD C13 C13 C 0 1 Y Y N N N N -84.367 59.612 4.830 4.070 0.425 0.375 C13 3RD 32
3RD C14 C14 C 0 1 Y Y N N N N -83.789 60.756 5.685 2.761 0.007 0.310 C14 3RD 33
3RD C15 C15 C 0 1 N Y N N N N -86.341 57.901 4.292 6.509 -0.013 0.136 C15 3RD 34
3RD O7 O7 O 0 1 N Y N N N N -86.857 56.879 5.149 6.793 1.256 0.489 O7 3RD 35
3RD O8 O8 O 0 1 N Y N N N N -87.239 58.333 3.588 7.408 -0.786 -0.128 O8 3RD 36
3RD H10 H10 H 0 1 N Y N N N N -86.576 61.165 7.995 3.273 -3.219 -0.637 H10 3RD 37
3RD H11 H11 H 0 1 N Y N N N N -87.560 59.221 6.540 5.609 -2.467 -0.530 H11 3RD 38
3RD H12 H12 H 0 1 N Y N N N N -83.793 59.209 4.009 4.298 1.442 0.658 H12 3RD 39
3RD H13 H13 H 0 1 N Y N N N N -82.810 61.155 5.463 1.962 0.696 0.540 H13 3RD 40
3RD H14 H14 H 0 1 N Y N N N N -87.785 56.762 4.981 7.727 1.504 0.518 H14 3RD 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3RD N1 N3 DOUB N N 1
3RD C1 C2 DOUB Y N 2
3RD C1 O2 SING N N 3
3RD C2 C7 SING N N 4
3RD N2 C2 SING Y N 5
3RD C3 N2 DOUB Y N 6
3RD C4 C3 SING Y N 7
3RD C4 C5 DOUB Y N 8
3RD C5 C1 SING Y N 9
3RD C6 C5 SING N N 10
3RD C6 O1 DOUB N N 11
3RD C6 H1 SING N N 12
3RD O2 H2 SING N N 13
3RD C7 H3 SING N N 14
3RD C7 H4 SING N N 15
3RD C7 H5 SING N N 16
3RD C8 C4 SING N N 17
3RD C8 O3 SING N N 18
3RD C8 H6 SING N N 19
3RD C8 H7 SING N N 20
3RD P1 O3 SING N N 21
3RD P1 O6 SING N N 22
3RD O4 P1 DOUB N N 23
3RD O5 P1 SING N N 24
3RD O5 H8 SING N N 25
3RD O6 H9 SING N N 26
3RD N3 C3 SING N N 27
3RD N1 C9 SING N N 28
3RD C9 C10 DOUB Y N 29
3RD C9 C14 SING Y N 30
3RD C10 C11 SING Y N 31
3RD C11 C12 DOUB Y N 32
3RD C12 C13 SING Y N 33
3RD C13 C14 DOUB Y N 34
3RD C12 C15 SING N N 35
3RD C15 O7 SING N N 36
3RD C15 O8 DOUB N N 37
3RD C10 H10 SING N N 38
3RD C11 H11 SING N N 39
3RD C13 H12 SING N N 40
3RD C14 H13 SING N N 41
3RD O7 H14 SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3RD SMILES ACDLabs 12.01 "O=C(O)c2ccc(/N=N/c1nc(c(O)c(c1COP(=O)(O)O)C=O)C)cc2"
3RD InChI InChI 1.03 "InChI=1S/C15H14N3O8P/c1-8-13(20)11(6-19)12(7-26-27(23,24)25)14(16-8)18-17-10-4-2-9(3-5-10)15(21)22/h2-6,20H,7H2,1H3,(H,21,22)(H2,23,24,25)/b18-17+"
3RD InChIKey InChI 1.03 NPBWMMRUXMTIRC-ISLYRVAYSA-N
3RD SMILES_CANONICAL CACTVS 3.370 "Cc1nc(N=Nc2ccc(cc2)C(O)=O)c(CO[P](O)(O)=O)c(C=O)c1O"
3RD SMILES CACTVS 3.370 "Cc1nc(N=Nc2ccc(cc2)C(O)=O)c(CO[P](O)(O)=O)c(C=O)c1O"
3RD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1c(c(c(c(n1)/N=N/c2ccc(cc2)C(=O)O)COP(=O)(O)O)C=O)O"
3RD SMILES "OpenEye OEToolkits" 1.7.2 "Cc1c(c(c(c(n1)N=Nc2ccc(cc2)C(=O)O)COP(=O)(O)O)C=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3RD "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid"
3RD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "4-[(E)-[4-methanoyl-6-methyl-5-oxidanyl-3-(phosphonooxymethyl)pyridin-2-yl]diazenyl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3RD "Create component" 2011-05-21 RCSB
3RD "Other modification" 2011-09-20 RCSB
3RD "Modify synonyms" 2020-06-05 PDBE
3RD "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 3RD
_pdbx_chem_comp_synonyms.name FOBISIN101
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 3RD
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom N3
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#