data_3RD
# 
_chem_comp.id                                    3RD 
_chem_comp.name                                  "4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H14 N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         FOBISIN101 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-05-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        395.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3RD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3RDH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3RD N1  N1  N 0 1 N Y N N N N -84.616 62.276 7.982  1.166  -1.729 -0.110 N1  3RD 1  
3RD C1  C1  C 0 1 Y N N N N N -82.731 66.186 10.676 -3.675 -2.210 -0.022 C1  3RD 2  
3RD C2  C2  C 0 1 Y N N N N N -83.861 65.326 10.813 -2.589 -3.033 -0.310 C2  3RD 3  
3RD N2  N2  N 0 1 Y N N N N N -84.093 64.344 9.894  -1.359 -2.580 -0.237 N2  3RD 4  
3RD C3  C3  C 0 1 Y N N N N N -83.286 64.119 8.812  -1.087 -1.326 0.112  C3  3RD 5  
3RD C4  C4  C 0 1 Y N N N N N -82.112 64.927 8.575  -2.113 -0.431 0.418  C4  3RD 6  
3RD C5  C5  C 0 1 Y N N N N N -81.850 65.985 9.546  -3.439 -0.871 0.347  C5  3RD 7  
3RD C6  C6  C 0 1 N N N N N N -80.612 66.933 9.402  -4.556 0.035  0.661  C6  3RD 8  
3RD O1  O1  O 0 1 N N N N N N -80.125 67.477 10.412 -5.698 -0.365 0.594  O1  3RD 9  
3RD O2  O2  O 0 1 N N N N N N -82.506 67.173 11.604 -4.940 -2.688 -0.101 O2  3RD 10 
3RD C7  C7  C 0 1 N N N N N N -84.839 65.475 11.989 -2.830 -4.465 -0.712 C7  3RD 11 
3RD C8  C8  C 0 1 N N N N N N -81.176 64.682 7.356  -1.798 0.989  0.813  C8  3RD 12 
3RD O3  O3  O 0 1 N N N N N N -80.442 63.588 7.954  -1.759 1.811  -0.355 O3  3RD 13 
3RD P1  P1  P 0 1 N N N N N N -79.227 62.634 7.478  -1.449 3.390  -0.306 P1  3RD 14 
3RD O4  O4  O 0 1 N N N N N N -78.655 63.052 6.178  -0.163 3.619  0.391  O4  3RD 15 
3RD O5  O5  O 0 1 N N N N N N -79.935 61.190 7.299  -1.356 3.966  -1.806 O5  3RD 16 
3RD O6  O6  O 0 1 N N N N N N -78.137 62.532 8.659  -2.630 4.145  0.486  O6  3RD 17 
3RD N3  N3  N 0 1 N N N N N N -83.747 63.104 8.080  0.211  -0.909 0.171  N3  3RD 18 
3RD H1  H1  H 0 1 N N N N N N -80.181 67.115 8.429  -4.357 1.056  0.951  H1  3RD 19 
3RD H2  H2  H 0 1 N Y N N N N -81.645 67.550 11.463 -5.267 -3.071 0.725  H2  3RD 20 
3RD H3  H3  H 0 1 N N N N N N -85.631 64.716 11.906 -2.934 -4.526 -1.796 H3  3RD 21 
3RD H4  H4  H 0 1 N N N N N N -84.297 65.337 12.936 -1.987 -5.079 -0.394 H4  3RD 22 
3RD H5  H5  H 0 1 N N N N N N -85.289 66.479 11.967 -3.742 -4.827 -0.239 H5  3RD 23 
3RD H6  H6  H 0 1 N N N N N N -81.702 64.420 6.426  -2.569 1.357  1.491  H6  3RD 24 
3RD H7  H7  H 0 1 N N N N N N -80.555 65.547 7.080  -0.830 1.021  1.313  H7  3RD 25 
3RD H8  H8  H 0 1 N N N N N N -79.842 60.901 6.399  -1.171 4.914  -1.853 H8  3RD 26 
3RD H9  H9  H 0 1 N N N N N N -77.280 62.763 8.320  -3.503 4.038  0.085  H9  3RD 27 
3RD C9  C9  C 0 1 Y Y N N N N -84.607 61.331 6.856  2.465  -1.312 -0.051 C9  3RD 28 
3RD C10 C10 C 0 1 Y Y N N N N -86.003 60.762 7.173  3.501  -2.202 -0.355 C10 3RD 29 
3RD C11 C11 C 0 1 Y Y N N N N -86.581 59.619 6.318  4.809  -1.781 -0.295 C11 3RD 30 
3RD C12 C12 C 0 1 Y Y N N N N -85.763 59.044 5.147  5.104  -0.464 0.071  C12 3RD 31 
3RD C13 C13 C 0 1 Y Y N N N N -84.367 59.612 4.830  4.070  0.425  0.375  C13 3RD 32 
3RD C14 C14 C 0 1 Y Y N N N N -83.789 60.756 5.685  2.761  0.007  0.310  C14 3RD 33 
3RD C15 C15 C 0 1 N Y N N N N -86.341 57.901 4.292  6.509  -0.013 0.136  C15 3RD 34 
3RD O7  O7  O 0 1 N Y N N N N -86.857 56.879 5.149  6.793  1.256  0.489  O7  3RD 35 
3RD O8  O8  O 0 1 N Y N N N N -87.239 58.333 3.588  7.408  -0.786 -0.128 O8  3RD 36 
3RD H10 H10 H 0 1 N Y N N N N -86.576 61.165 7.995  3.273  -3.219 -0.637 H10 3RD 37 
3RD H11 H11 H 0 1 N Y N N N N -87.560 59.221 6.540  5.609  -2.467 -0.530 H11 3RD 38 
3RD H12 H12 H 0 1 N Y N N N N -83.793 59.209 4.009  4.298  1.442  0.658  H12 3RD 39 
3RD H13 H13 H 0 1 N Y N N N N -82.810 61.155 5.463  1.962  0.696  0.540  H13 3RD 40 
3RD H14 H14 H 0 1 N Y N N N N -87.785 56.762 4.981  7.727  1.504  0.518  H14 3RD 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3RD N1  N3  DOUB N N 1  
3RD C1  C2  DOUB Y N 2  
3RD C1  O2  SING N N 3  
3RD C2  C7  SING N N 4  
3RD N2  C2  SING Y N 5  
3RD C3  N2  DOUB Y N 6  
3RD C4  C3  SING Y N 7  
3RD C4  C5  DOUB Y N 8  
3RD C5  C1  SING Y N 9  
3RD C6  C5  SING N N 10 
3RD C6  O1  DOUB N N 11 
3RD C6  H1  SING N N 12 
3RD O2  H2  SING N N 13 
3RD C7  H3  SING N N 14 
3RD C7  H4  SING N N 15 
3RD C7  H5  SING N N 16 
3RD C8  C4  SING N N 17 
3RD C8  O3  SING N N 18 
3RD C8  H6  SING N N 19 
3RD C8  H7  SING N N 20 
3RD P1  O3  SING N N 21 
3RD P1  O6  SING N N 22 
3RD O4  P1  DOUB N N 23 
3RD O5  P1  SING N N 24 
3RD O5  H8  SING N N 25 
3RD O6  H9  SING N N 26 
3RD N3  C3  SING N N 27 
3RD N1  C9  SING N N 28 
3RD C9  C10 DOUB Y N 29 
3RD C9  C14 SING Y N 30 
3RD C10 C11 SING Y N 31 
3RD C11 C12 DOUB Y N 32 
3RD C12 C13 SING Y N 33 
3RD C13 C14 DOUB Y N 34 
3RD C12 C15 SING N N 35 
3RD C15 O7  SING N N 36 
3RD C15 O8  DOUB N N 37 
3RD C10 H10 SING N N 38 
3RD C11 H11 SING N N 39 
3RD C13 H12 SING N N 40 
3RD C14 H13 SING N N 41 
3RD O7  H14 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3RD SMILES           ACDLabs              12.01 "O=C(O)c2ccc(/N=N/c1nc(c(O)c(c1COP(=O)(O)O)C=O)C)cc2"                                                                                                
3RD InChI            InChI                1.03  "InChI=1S/C15H14N3O8P/c1-8-13(20)11(6-19)12(7-26-27(23,24)25)14(16-8)18-17-10-4-2-9(3-5-10)15(21)22/h2-6,20H,7H2,1H3,(H,21,22)(H2,23,24,25)/b18-17+" 
3RD InChIKey         InChI                1.03  NPBWMMRUXMTIRC-ISLYRVAYSA-N                                                                                                                          
3RD SMILES_CANONICAL CACTVS               3.370 "Cc1nc(N=Nc2ccc(cc2)C(O)=O)c(CO[P](O)(O)=O)c(C=O)c1O"                                                                                                
3RD SMILES           CACTVS               3.370 "Cc1nc(N=Nc2ccc(cc2)C(O)=O)c(CO[P](O)(O)=O)c(C=O)c1O"                                                                                                
3RD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1c(c(c(c(n1)/N=N/c2ccc(cc2)C(=O)O)COP(=O)(O)O)C=O)O"                                                                                              
3RD SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1c(c(c(c(n1)N=Nc2ccc(cc2)C(=O)O)COP(=O)(O)O)C=O)O"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3RD "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid"   
3RD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "4-[(E)-[4-methanoyl-6-methyl-5-oxidanyl-3-(phosphonooxymethyl)pyridin-2-yl]diazenyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3RD "Create component"   2011-05-21 RCSB 
3RD "Other modification" 2011-09-20 RCSB 
3RD "Modify synonyms"    2020-06-05 PDBE 
3RD "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      3RD 
_pdbx_chem_comp_synonyms.name         FOBISIN101 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3RD 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#