data_3SP
#
_chem_comp.id 3SP
_chem_comp.name "N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({5-[(E)-AMINO(IMINO)METHYL]THIEN-2-YL}METHYL)-L-PROLINAMIDE"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H33 N5 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-01-06
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 463.594
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3SP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2FES
_chem_comp.pdbx_subcomponent_list "01N PRO 02D"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3SP C18 C18 C 0 1 N N N 17.508 19.648 22.662 1.529 -0.504 0.411 C 01N 1
3SP O19 O19 O 0 1 N N N 16.617 20.308 23.168 0.733 0.407 0.507 O 01N 2
3SP C20 C20 C 0 1 N N R 17.787 18.250 23.191 3.008 -0.222 0.474 CA 01N 3
3SP C24 C24 C 0 1 N N N 18.336 18.310 24.638 3.569 -0.125 -0.946 CB 01N 4
3SP C25 C25 C 0 1 N N N 19.733 18.952 24.668 5.082 0.097 -0.882 CG 01N 5
3SP C26 C26 C 0 1 N N N 20.056 19.431 26.094 5.754 -1.139 -0.280 CD1 01N 6
3SP C27 C27 C 0 1 N N N 21.442 20.125 26.111 7.266 -0.916 -0.216 CE1 01N 7
3SP C28 C28 C 0 1 N N N 22.543 19.153 25.619 7.807 -0.678 -1.628 CZ 01N 8
3SP C29 C29 C 0 1 N N N 22.203 18.611 24.208 7.135 0.558 -2.230 CE2 01N 9
3SP C30 C30 C 0 1 N N N 20.807 17.933 24.212 5.622 0.335 -2.293 CD2 01N 10
3SP N21 N21 N 0 1 N N N 16.538 17.477 23.168 3.235 1.047 1.178 N 01N 11
3SP C22 C22 C 0 1 N N N 15.969 17.042 21.879 2.722 2.181 0.397 C1 01N 12
3SP C23 C23 C 0 1 N N N 14.515 16.670 22.049 3.092 3.471 1.082 C2 01N 13
3SP O31 O31 O 0 1 N N N 14.098 16.302 23.137 2.725 4.646 0.545 O21 01N 14
3SP O32 O32 O 0 1 N N N 13.753 16.733 21.090 3.719 3.448 2.115 O22 01N 15
3SP N17 N17 N 0 1 N N N 18.239 20.161 21.621 1.090 -1.768 0.247 N PRO 16
3SP C13 C13 C 0 1 N N S 18.049 21.509 21.005 -0.317 -2.173 0.076 CA PRO 17
3SP C11 C11 C 0 1 N N N 16.642 21.602 20.450 -1.217 -1.321 0.934 C PRO 18
3SP O12 O12 O 0 1 N N N 16.213 20.688 19.755 -0.796 -0.845 1.967 O PRO 19
3SP C14 C14 C 0 1 N N N 19.090 21.624 19.854 -0.364 -3.649 0.545 CB PRO 20
3SP C15 C15 C 0 1 N N N 20.165 20.576 20.244 0.998 -4.183 0.029 CG PRO 21
3SP C16 C16 C 0 1 N N N 19.335 19.479 20.915 1.935 -2.970 0.208 CD PRO 22
3SP C1 C1 C 0 1 Y N N 11.987 22.183 23.007 -6.789 0.378 -0.525 C1 02D 23
3SP C2 C2 C 0 1 Y N N 12.340 20.938 22.463 -6.889 -0.724 0.273 C2 02D 24
3SP C3 C3 C 0 1 Y N N 13.293 21.060 21.433 -5.732 -1.002 0.966 C3 02D 25
3SP C4 C4 C 0 1 Y N N 13.654 22.401 21.205 -4.721 -0.156 0.743 C4 02D 26
3SP S5 S5 S 0 1 Y N N 12.824 23.451 22.252 -5.174 1.056 -0.369 S5 02D 27
3SP C6 C6 C 0 1 N N N 11.002 22.381 24.095 -7.859 0.910 -1.383 C6 02D 28
3SP N7 N7 N 0 1 N N N 10.354 21.335 24.617 -9.021 0.316 -1.421 N7 02D 29
3SP N8 N8 N 0 1 N N N 10.754 23.611 24.552 -7.634 2.037 -2.147 N8 02D 30
3SP C9 C9 C 0 1 N N N 14.528 22.806 20.270 -3.363 -0.260 1.387 C9 02D 31
3SP N10 N10 N 0 1 N N N 15.855 22.688 20.750 -2.488 -1.088 0.553 N10 02D 32
3SP H20 H20 H 0 1 N N N 18.544 17.768 22.555 3.509 -1.029 1.009 H13 01N 33
3SP H241 H241 H 0 0 N N N 17.652 18.911 25.256 3.361 -1.051 -1.483 H141 01N 34
3SP H242 H242 H 0 0 N N N 18.403 17.288 25.038 3.101 0.710 -1.466 H142 01N 35
3SP H25 H25 H 0 1 N N N 19.739 19.810 23.980 5.295 0.966 -0.260 H15 01N 36
3SP H261 H261 H 0 0 N N N 19.286 20.145 26.423 5.369 -1.308 0.725 H161 01N 37
3SP H262 H262 H 0 0 N N N 20.072 18.567 26.775 5.541 -2.008 -0.902 H162 01N 38
3SP H271 H271 H 0 0 N N N 21.414 21.002 25.448 7.480 -0.047 0.406 H171 01N 39
3SP H272 H272 H 0 0 N N N 21.674 20.441 27.139 7.745 -1.796 0.213 H172 01N 40
3SP H281 H281 H 0 0 N N N 23.503 19.689 25.577 8.884 -0.520 -1.582 H181 01N 41
3SP H282 H282 H 0 0 N N N 22.617 18.309 26.320 7.594 -1.547 -2.250 H182 01N 42
3SP H291 H291 H 0 0 N N N 22.197 19.446 23.492 7.348 1.427 -1.607 H191 01N 43
3SP H292 H292 H 0 0 N N N 22.963 17.872 23.912 7.520 0.727 -3.235 H192 01N 44
3SP H301 H301 H 0 0 N N N 20.818 17.079 24.905 5.409 -0.534 -2.916 H201 01N 45
3SP H302 H302 H 0 0 N N N 20.569 17.581 23.197 5.143 1.215 -2.722 H202 01N 46
3SP HN21 HN21 H 0 0 N N N 16.717 16.642 23.689 2.825 1.028 2.099 H5 01N 47
3SP H221 H221 H 0 0 N N N 16.050 17.863 21.152 3.158 2.162 -0.602 H211 01N 48
3SP H222 H222 H 0 0 N N N 16.526 16.167 21.514 1.637 2.109 0.321 H212 01N 49
3SP HO31 HO31 H 0 0 N N N 13.171 16.104 23.071 2.986 5.446 1.021 HO2 01N 50
3SP H13 H13 H 0 1 N N N 18.189 22.318 21.737 -0.611 -2.098 -0.971 HA PRO 51
3SP H141 H141 H 0 0 N N N 18.640 21.398 18.876 -0.423 -3.712 1.631 HB2 PRO 52
3SP H142 H142 H 0 0 N N N 19.515 22.637 19.791 -1.194 -4.181 0.079 HB3 PRO 53
3SP H151 H151 H 0 0 N N N 20.706 20.199 19.364 1.336 -5.024 0.635 HG2 PRO 54
3SP H152 H152 H 0 0 N N N 20.917 20.996 20.928 0.929 -4.466 -1.021 HG3 PRO 55
3SP H161 H161 H 0 0 N N N 18.935 18.784 20.162 2.489 -3.064 1.142 HD2 PRO 56
3SP H162 H162 H 0 0 N N N 19.953 18.907 21.623 2.627 -2.909 -0.632 HD3 PRO 57
3SP H2 H2 H 0 1 N N N 11.929 19.996 22.795 -7.787 -1.319 0.353 H2 02D 58
3SP H3 H3 H 0 1 N N N 13.699 20.224 20.883 -5.648 -1.841 1.641 H3 02D 59
3SP HN7 HN7 H 0 1 N N N 9.716 21.610 25.336 -9.727 0.666 -1.987 HN7 02D 60
3SP HN81 HN81 H 0 0 N N N 10.085 23.747 25.283 -6.770 2.478 -2.118 HN81 02D 61
3SP HN82 HN82 H 0 0 N N N 11.237 24.396 24.164 -8.339 2.388 -2.713 HN82 02D 62
3SP H91 H91 H 0 1 N N N 14.412 22.181 19.372 -2.932 0.736 1.489 H91 02D 63
3SP H92 H92 H 0 1 N N N 14.327 23.858 20.020 -3.462 -0.715 2.373 H92 02D 64
3SP HN10 HN10 H 0 0 N N N 16.230 23.416 21.324 -2.825 -1.469 -0.273 HN10 02D 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3SP C1 C2 DOUB Y N 1
3SP C1 S5 SING Y N 2
3SP C1 C6 SING N N 3
3SP C2 C3 SING Y N 4
3SP C2 H2 SING N N 5
3SP C3 C4 DOUB Y N 6
3SP C3 H3 SING N N 7
3SP C4 S5 SING Y N 8
3SP C4 C9 SING N N 9
3SP C6 N7 DOUB N N 10
3SP C6 N8 SING N N 11
3SP N7 HN7 SING N N 12
3SP N8 HN81 SING N N 13
3SP N8 HN82 SING N N 14
3SP C9 N10 SING N N 15
3SP C9 H91 SING N N 16
3SP C9 H92 SING N N 17
3SP N10 C11 SING N N 18
3SP N10 HN10 SING N N 19
3SP C11 O12 DOUB N N 20
3SP C11 C13 SING N N 21
3SP C13 C14 SING N N 22
3SP C13 N17 SING N N 23
3SP C13 H13 SING N N 24
3SP C14 C15 SING N N 25
3SP C14 H141 SING N N 26
3SP C14 H142 SING N N 27
3SP C15 C16 SING N N 28
3SP C15 H151 SING N N 29
3SP C15 H152 SING N N 30
3SP C16 N17 SING N N 31
3SP C16 H161 SING N N 32
3SP C16 H162 SING N N 33
3SP N17 C18 SING N N 34
3SP C18 O19 DOUB N N 35
3SP C18 C20 SING N N 36
3SP C20 N21 SING N N 37
3SP C20 C24 SING N N 38
3SP C20 H20 SING N N 39
3SP N21 C22 SING N N 40
3SP N21 HN21 SING N N 41
3SP C22 C23 SING N N 42
3SP C22 H221 SING N N 43
3SP C22 H222 SING N N 44
3SP C23 O31 SING N N 45
3SP C23 O32 DOUB N N 46
3SP C24 C25 SING N N 47
3SP C24 H241 SING N N 48
3SP C24 H242 SING N N 49
3SP C25 C26 SING N N 50
3SP C25 C30 SING N N 51
3SP C25 H25 SING N N 52
3SP C26 C27 SING N N 53
3SP C26 H261 SING N N 54
3SP C26 H262 SING N N 55
3SP C27 C28 SING N N 56
3SP C27 H271 SING N N 57
3SP C27 H272 SING N N 58
3SP C28 C29 SING N N 59
3SP C28 H281 SING N N 60
3SP C28 H282 SING N N 61
3SP C29 C30 SING N N 62
3SP C29 H291 SING N N 63
3SP C29 H292 SING N N 64
3SP C30 H301 SING N N 65
3SP C30 H302 SING N N 66
3SP O31 HO31 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3SP SMILES ACDLabs 12.01 "O=C(NCc1sc(cc1)C(=[N@H])N)C3N(C(=O)C(NCC(=O)O)CC2CCCCC2)CCC3"
3SP InChI InChI 1.03 "InChI=1S/C22H33N5O4S/c23-20(24)18-9-8-15(32-18)12-26-21(30)17-7-4-10-27(17)22(31)16(25-13-19(28)29)11-14-5-2-1-3-6-14/h8-9,14,16-17,25H,1-7,10-13H2,(H3,23,24)(H,26,30)(H,28,29)/t16-,17+/m1/s1"
3SP InChIKey InChI 1.03 WWADFOUMUCMPEO-SJORKVTESA-N
3SP SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1sc(CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](CC3CCCCC3)NCC(O)=O)cc1"
3SP SMILES CACTVS 3.385 "NC(=N)c1sc(CNC(=O)[CH]2CCCN2C(=O)[CH](CC3CCCCC3)NCC(O)=O)cc1"
3SP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(/c1ccc(s1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](CC3CCCCC3)NCC(=O)O)\N"
3SP SMILES "OpenEye OEToolkits" 1.7.5 "c1cc(sc1CNC(=O)C2CCCN2C(=O)C(CC3CCCCC3)NCC(=O)O)C(=N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3SP "SYSTEMATIC NAME" ACDLabs 12.01 "N-(carboxymethyl)-3-cyclohexyl-D-alanyl-N-[(5-carbamimidoylthiophen-2-yl)methyl]-L-prolinamide"
3SP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[[(2R)-1-[(2S)-2-[(5-carbamimidoylthiophen-2-yl)methylcarbamoyl]pyrrolidin-1-yl]-3-cyclohexyl-1-oxo-propan-2-yl]amino]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3SP "Create component" 2006-01-06 RCSB
3SP "Modify subcomponent list" 2011-02-24 RCSB
3SP "Modify descriptor" 2011-06-04 RCSB
3SP "Modify descriptor" 2012-01-05 RCSB
#