data_3U0 # _chem_comp.id 3U0 _chem_comp.name "2-[4-(carbamimidamidomethyl)phenyl]ethanoic acid" _chem_comp.type "L-peptide NH3 amino terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H13 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[4-[(diaminomethylideneamino)methyl]phenyl]acetic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-24 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 207.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3U0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YD4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3U0 CA C1 C 0 1 N N N N N N 53.686 -35.183 -4.191 3.456 0.759 0.002 CA 3U0 1 3U0 N1 N1 N 0 1 N N N N N N 53.827 -30.562 0.471 -2.843 -0.469 0.001 N1 3U0 2 3U0 O O1 O 0 1 N N N Y N Y 51.539 -35.998 -3.493 3.116 -1.572 -0.003 O 3U0 3 3U0 C C2 C 0 1 N N N Y N Y 52.153 -35.278 -4.274 3.923 -0.673 -0.000 C 3U0 4 3U0 N2 N2 N 0 1 N N N N N N 51.817 -30.288 1.616 -5.068 0.380 -0.002 N2 3U0 5 3U0 C3 C3 C 0 1 Y N N N N N 53.964 -34.000 -3.258 1.949 0.796 0.001 C3 3U0 6 3U0 N3 N3 N 0 1 N N N N N N 51.855 -30.120 -0.698 -4.666 -1.905 0.003 N3 3U0 7 3U0 C4 C4 C 0 1 Y N N N N N 54.278 -32.765 -3.809 1.259 0.809 -1.196 C4 3U0 8 3U0 C5 C5 C 0 1 Y N N N N N 53.858 -34.143 -1.882 1.257 0.810 1.198 C5 3U0 9 3U0 C6 C6 C 0 1 Y N N N N N 54.516 -31.679 -2.989 -0.123 0.843 -1.197 C6 3U0 10 3U0 C7 C7 C 0 1 Y N N N N N 54.409 -31.818 -1.604 -0.815 0.863 -0.001 C7 3U0 11 3U0 C8 C8 C 0 1 Y N N N N N 54.089 -33.050 -1.045 -0.125 0.844 1.197 C8 3U0 12 3U0 C9 C9 C 0 1 N N N N N N 54.693 -30.593 -0.719 -2.321 0.900 -0.002 C9 3U0 13 3U0 C10 C10 C 0 1 N N N N N N 52.501 -30.321 0.459 -4.201 -0.687 0.001 C10 3U0 14 3U0 HA2 H1 H 0 1 N N N N N N 54.108 -36.110 -3.775 3.831 1.262 0.893 HA2 3U0 15 3U0 HA1 H2 H 0 1 N N N N N N 54.116 -34.999 -5.187 3.832 1.266 -0.886 HA1 3U0 16 3U0 H3 H3 H 0 1 N N N N N N 54.256 -30.733 1.358 -2.231 -1.222 0.003 H3 3U0 17 3U0 H5 H5 H 0 1 N N N N N N 52.292 -30.442 2.482 -6.026 0.226 -0.003 H5 3U0 18 3U0 H6 H6 H 0 1 N N N N N N 50.833 -30.109 1.610 -4.723 1.286 -0.004 H6 3U0 19 3U0 H7 H7 H 0 1 N N N N N N 50.878 -29.959 -0.558 -5.623 -2.058 0.003 H7 3U0 20 3U0 H8 H8 H 0 1 N N N N N N 54.336 -32.653 -4.882 1.799 0.794 -2.131 H8 3U0 21 3U0 H9 H9 H 0 1 N N N N N N 53.596 -35.101 -1.458 1.796 0.795 2.134 H9 3U0 22 3U0 H10 H10 H 0 1 N N N N N N 54.784 -30.725 -3.418 -0.662 0.854 -2.133 H10 3U0 23 3U0 H11 H11 H 0 1 N N N N N N 54.020 -33.160 0.027 -0.665 0.855 2.132 H11 3U0 24 3U0 H12 H12 H 0 1 N N N N N N 55.743 -30.625 -0.394 -2.671 1.421 -0.893 H12 3U0 25 3U0 H13 H13 H 0 1 N N N N N N 54.520 -29.681 -1.309 -2.672 1.424 0.887 H13 3U0 26 3U0 OXT O2 O 0 1 N Y N Y N Y 51.558 -34.477 -5.163 5.237 -0.951 0.000 OXT 3U0 27 3U0 HXT H4 H 0 1 N Y N Y N Y 50.615 -34.562 -5.085 5.488 -1.884 -0.002 HXT 3U0 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3U0 C CA SING N N 1 3U0 C O DOUB N N 2 3U0 CA C3 SING N N 3 3U0 C4 C3 DOUB Y N 4 3U0 C4 C6 SING Y N 5 3U0 C3 C5 SING Y N 6 3U0 C6 C7 DOUB Y N 7 3U0 C5 C8 DOUB Y N 8 3U0 C7 C8 SING Y N 9 3U0 C7 C9 SING N N 10 3U0 C9 N1 SING N N 11 3U0 N3 C10 DOUB N N 12 3U0 C10 N1 SING N N 13 3U0 C10 N2 SING N N 14 3U0 CA HA2 SING N N 15 3U0 CA HA1 SING N N 16 3U0 N1 H3 SING N N 17 3U0 N2 H5 SING N N 18 3U0 N2 H6 SING N N 19 3U0 N3 H7 SING N N 20 3U0 C4 H8 SING N N 21 3U0 C5 H9 SING N N 22 3U0 C6 H10 SING N N 23 3U0 C8 H11 SING N N 24 3U0 C9 H12 SING N N 25 3U0 C9 H13 SING N N 26 3U0 C OXT SING N N 27 3U0 OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3U0 InChI InChI 1.06 "InChI=1S/C10H13N3O2/c11-10(12)13-6-8-3-1-7(2-4-8)5-9(14)15/h1-4H,5-6H2,(H,14,15)(H4,11,12,13)" 3U0 InChIKey InChI 1.06 VRFIQGHKZCJHDG-UHFFFAOYSA-N 3U0 SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCc1ccc(CC(O)=O)cc1" 3U0 SMILES CACTVS 3.385 "NC(=N)NCc1ccc(CC(O)=O)cc1" 3U0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C(\N)/NCc1ccc(cc1)CC(=O)O" 3U0 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1CC(=O)O)CNC(=N)N" # _pdbx_chem_comp_identifier.comp_id 3U0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "2-[4-(carbamimidamidomethyl)phenyl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3U0 "Create component" 2022-10-06 PDBE 3U0 "Modify leaving atom flag" 2022-10-10 PDBE 3U0 "Initial release" 2022-10-19 RCSB 3U0 "Modify backbone" 2023-11-03 PDBE 3U0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 3U0 _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #