data_3VI # _chem_comp.id 3VI _chem_comp.name "1,1'-methylenebis{4-[(E)-(hydroxyimino)methyl]pyridin-1-ium}" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2021-07-06 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3VI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RB7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3VI CAC C1 C 0 1 N N N 94.141 49.344 -11.237 4.603 0.995 0.554 CAC 3VI 1 3VI CAD C2 C 0 1 N N N 91.975 52.762 -2.840 -4.600 1.001 -0.551 CAD 3VI 2 3VI CAE C3 C 0 1 Y N N 91.930 49.743 -10.374 2.682 -0.278 1.531 CAE 3VI 3 3VI CAF C4 C 0 1 Y N N 93.697 51.323 -9.940 2.961 -0.266 -0.854 CAF 3VI 4 3VI CAG C5 C 0 1 Y N N 91.879 51.569 -4.928 -2.679 -0.271 -1.532 CAG 3VI 5 3VI CAH C6 C 0 1 Y N N 91.012 53.813 -4.779 -2.969 -0.279 0.852 CAH 3VI 6 3VI CAI C7 C 0 1 Y N N 91.040 50.532 -9.655 1.569 -1.073 1.349 CAI 3VI 7 3VI CAJ C8 C 0 1 Y N N 92.816 52.119 -9.218 1.844 -1.070 -0.942 CAJ 3VI 8 3VI CAK C9 C 0 1 Y N N 91.528 51.517 -6.272 -1.567 -1.068 -1.352 CAK 3VI 9 3VI CAL C10 C 0 1 Y N N 90.657 53.771 -6.123 -1.843 -1.071 0.940 CAL 3VI 10 3VI CAM C11 C 0 1 N N N 90.538 52.570 -8.306 -0.000 -2.285 -0.003 CAM 3VI 11 3VI CAP C12 C 0 1 Y N N 93.256 50.137 -10.516 3.405 0.143 0.409 CAP 3VI 12 3VI CAQ C13 C 0 1 Y N N 91.622 52.715 -4.184 -3.406 0.143 -0.409 CAQ 3VI 13 3VI NAN N1 N 0 1 N N N 93.772 49.085 -12.498 5.255 1.378 -0.495 NAN 3VI 14 3VI NAO N2 N 0 1 N N N 90.944 52.783 -1.984 -5.257 1.373 0.498 NAO 3VI 15 3VI NAR N3 N 1 1 Y N N 91.481 51.726 -9.073 1.188 -1.440 0.141 NAR 3VI 16 3VI NAS N4 N 1 1 Y N N 90.914 52.620 -6.875 -1.187 -1.438 -0.144 NAS 3VI 17 3VI OAA O1 O 0 1 N N N 94.671 48.255 -13.295 6.403 2.195 -0.356 OAA 3VI 18 3VI OAB O2 O 0 1 N N N 91.266 52.833 -0.561 -6.402 2.196 0.361 OAB 3VI 19 3VI H1 H1 H 0 1 N N N 95.058 48.965 -10.812 4.932 1.302 1.536 H1 3VI 20 3VI H2 H2 H 0 1 N N N 93.003 52.780 -2.510 -4.923 1.318 -1.532 H2 3VI 21 3VI H3 H3 H 0 1 N N N 91.591 48.821 -10.824 2.988 0.018 2.524 H3 3VI 22 3VI H4 H4 H 0 1 N N N 94.727 51.627 -10.054 3.493 0.033 -1.745 H4 3VI 23 3VI H5 H5 H 0 1 N N N 92.352 50.718 -4.461 -2.982 0.032 -2.523 H5 3VI 24 3VI H6 H6 H 0 1 N N N 90.813 54.700 -4.197 -3.501 0.018 1.744 H6 3VI 25 3VI H7 H7 H 0 1 N N N 90.010 50.224 -9.546 1.001 -1.400 2.208 H7 3VI 26 3VI H8 H8 H 0 1 N N N 93.161 53.039 -8.770 1.501 -1.401 -1.911 H8 3VI 27 3VI H9 H9 H 0 1 N N N 91.729 50.627 -6.850 -1.000 -1.393 -2.212 H9 3VI 28 3VI H10 H10 H 0 1 N N N 90.184 54.625 -6.585 -1.498 -1.401 1.908 H10 3VI 29 3VI H11 H11 H 0 1 N N N 90.552 53.590 -8.717 0.106 -2.913 -0.887 H11 3VI 30 3VI H12 H12 H 0 1 N N N 89.525 52.152 -8.397 -0.107 -2.915 0.880 H12 3VI 31 3VI H13 H13 H 0 1 N N N 94.308 48.140 -14.165 6.822 2.430 -1.195 H13 3VI 32 3VI H14 H14 H 0 1 N N N 90.463 52.844 -0.054 -6.826 2.421 1.200 H14 3VI 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3VI OAA NAN SING N N 1 3VI NAN CAC DOUB N E 2 3VI CAC CAP SING N N 3 3VI CAP CAE DOUB Y N 4 3VI CAP CAF SING Y N 5 3VI CAE CAI SING Y N 6 3VI CAF CAJ DOUB Y N 7 3VI CAI NAR DOUB Y N 8 3VI CAJ NAR SING Y N 9 3VI NAR CAM SING N N 10 3VI CAM NAS SING N N 11 3VI NAS CAK DOUB Y N 12 3VI NAS CAL SING Y N 13 3VI CAK CAG SING Y N 14 3VI CAL CAH DOUB Y N 15 3VI CAG CAQ DOUB Y N 16 3VI CAH CAQ SING Y N 17 3VI CAQ CAD SING N N 18 3VI CAD NAO DOUB N E 19 3VI NAO OAB SING N N 20 3VI CAC H1 SING N N 21 3VI CAD H2 SING N N 22 3VI CAE H3 SING N N 23 3VI CAF H4 SING N N 24 3VI CAG H5 SING N N 25 3VI CAH H6 SING N N 26 3VI CAI H7 SING N N 27 3VI CAJ H8 SING N N 28 3VI CAK H9 SING N N 29 3VI CAL H10 SING N N 30 3VI CAM H11 SING N N 31 3VI CAM H12 SING N N 32 3VI OAA H13 SING N N 33 3VI OAB H14 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3VI SMILES ACDLabs 12.01 "O\N=C\c1cc[n+](C[n+]2ccc(\C=N\O)cc2)cc1" 3VI InChI InChI 1.03 "InChI=1S/C13H12N4O2/c18-14-9-12-1-5-16(6-2-12)11-17-7-3-13(4-8-17)10-15-19/h1-10H,11H2/p+2" 3VI InChIKey InChI 1.03 CMMIGIRGSXYBDN-UHFFFAOYSA-P 3VI SMILES_CANONICAL CACTVS 3.385 "O\N=C\c1cc[n+](C[n+]2ccc(cc2)\C=N\O)cc1" 3VI SMILES CACTVS 3.385 "ON=Cc1cc[n+](C[n+]2ccc(cc2)C=NO)cc1" 3VI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc[n+](c1)C[n+]2ccc(cc2)/C=N/O)/C=N/O" 3VI SMILES "OpenEye OEToolkits" 2.0.7 "c1c[n+](ccc1C=NO)C[n+]2ccc(cc2)C=NO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3VI "SYSTEMATIC NAME" ACDLabs 12.01 "1,1'-methylenebis{4-[(E)-(hydroxyimino)methyl]pyridin-1-ium}" 3VI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{N}~{E})-~{N}-[[1-[[4-[(~{E})-hydroxyiminomethyl]pyridin-1-ium-1-yl]methyl]pyridin-1-ium-4-yl]methylidene]hydroxylamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3VI "Create component" 2021-07-06 RCSB 3VI "Initial release" 2021-09-22 RCSB ##