data_3VT # _chem_comp.id 3VT _chem_comp.name "[(3R)-1-hydroxy-4,5-dimethyl-6-(pyrazin-2-yloxy)-1,3-dihydro-2,1-benzoxaborol-3-yl]acetic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H15 B N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-11-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 314.101 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3VT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4WYY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3VT C1 C1 C 0 1 Y N N N N N -6.600 -12.265 19.221 0.658 1.354 -0.723 C1 3VT 1 3VT C2 C2 C 0 1 Y N N N N N -6.484 -13.589 19.572 1.454 0.260 -1.023 C2 3VT 2 3VT C3 C3 C 0 1 Y N N N N N -5.240 -14.207 19.665 0.881 -0.998 -1.158 C3 3VT 3 3VT O4 O1 O 0 1 N N N N N N -5.597 -10.012 16.921 -1.761 3.576 0.004 O4 3VT 4 3VT C7 C4 C 0 1 N N N N N N -2.614 -11.513 17.102 -3.171 -0.813 0.763 C7 3VT 5 3VT C8 C5 C 0 1 N N N N N N -1.730 -10.409 16.561 -4.670 -0.781 0.913 C8 3VT 6 3VT C9 C6 C 0 1 N N N N N N -2.711 -14.136 19.446 -1.094 -2.535 -1.135 C9 3VT 7 3VT C10 C7 C 0 1 N N N N N N -5.128 -15.634 20.139 1.748 -2.186 -1.485 C10 3VT 8 3VT C11 C8 C 0 1 Y N N N N N -8.553 -14.592 18.855 3.596 0.198 -0.115 C11 3VT 9 3VT C12 C9 C 0 1 Y N N N N N -8.232 -14.261 17.513 4.979 0.243 -0.259 C12 3VT 10 3VT C13 C10 C 0 1 Y N N N N N -10.209 -15.176 16.844 5.224 -0.239 1.965 C13 3VT 11 3VT C14 C11 C 0 1 Y N N N N N -10.504 -15.509 18.157 3.850 -0.279 2.112 C14 3VT 12 3VT O1 O2 O 0 1 N N N N N N -0.898 -9.842 17.214 -5.260 -1.469 1.903 O1 3VT 13 3VT O2 O3 O 0 1 N N N N N N -1.920 -10.127 15.338 -5.341 -0.137 0.142 O2 3VT 14 3VT C6 C12 C 0 1 N N R N N N -3.129 -11.190 18.508 -2.760 0.047 -0.433 C6 3VT 15 3VT O O4 O 0 1 N N N N N N -3.746 -9.918 18.538 -3.076 1.413 -0.169 O 3VT 16 3VT B B1 B 0 1 N N N N N N -5.201 -10.086 18.335 -1.879 2.177 -0.214 B 3VT 17 3VT C5 C13 C 0 1 Y N N N N N -4.206 -12.136 18.980 -1.281 -0.083 -0.683 C5 3VT 18 3VT C C14 C 0 1 Y N N N N N -5.459 -11.524 18.931 -0.711 1.183 -0.552 C 3VT 19 3VT C4 C15 C 0 1 Y N N N N N -4.077 -13.483 19.357 -0.482 -1.165 -0.993 C4 3VT 20 3VT O3 O5 O 0 1 N N N N N N -7.657 -14.318 19.853 2.794 0.418 -1.187 O3 3VT 21 3VT N1 N1 N 0 1 Y N N N N N -9.680 -15.205 19.178 3.065 -0.065 1.070 N1 3VT 22 3VT N N2 N 0 1 Y N N N N N -9.073 -14.558 16.511 5.757 0.024 0.784 N 3VT 23 3VT H1 H1 H 0 1 N N N N N N -7.574 -11.801 19.171 1.100 2.334 -0.617 H1 3VT 24 3VT H2 H2 H 0 1 N N N N N N -4.827 -9.866 16.383 -2.599 4.015 0.200 H2 3VT 25 3VT H3 H3 H 0 1 N N N N N N -3.474 -11.643 16.429 -2.707 -0.421 1.668 H3 3VT 26 3VT H4 H4 H 0 1 N N N N N N -2.034 -12.447 17.141 -2.843 -1.840 0.602 H4 3VT 27 3VT H5 H5 H 0 1 N N N N N N -2.306 -14.003 20.460 -1.300 -2.733 -2.187 H5 3VT 28 3VT H6 H6 H 0 1 N N N N N N -2.803 -15.210 19.226 -0.400 -3.284 -0.753 H6 3VT 29 3VT H7 H7 H 0 1 N N N N N N -2.033 -13.669 18.716 -2.024 -2.578 -0.568 H7 3VT 30 3VT H8 H8 H 0 1 N N N N N N -5.028 -15.650 21.234 2.099 -2.645 -0.560 H8 3VT 31 3VT H9 H9 H 0 1 N N N N N N -6.031 -16.190 19.845 1.168 -2.913 -2.053 H9 3VT 32 3VT H10 H10 H 0 1 N N N N N N -4.244 -16.103 19.683 2.603 -1.860 -2.076 H10 3VT 33 3VT H11 H11 H 0 1 N N N N N N -7.298 -13.763 17.295 5.416 0.457 -1.224 H11 3VT 34 3VT H12 H12 H 0 1 N N N N N N -10.918 -15.424 16.068 5.862 -0.414 2.818 H12 3VT 35 3VT H13 H13 H 0 1 N N N N N N -11.426 -16.030 18.368 3.417 -0.486 3.080 H13 3VT 36 3VT H14 H14 H 0 1 N N N N N N -0.454 -9.199 16.673 -6.224 -1.418 1.959 H14 3VT 37 3VT H15 H15 H 0 1 N N N N N N -2.285 -11.225 19.212 -3.296 -0.285 -1.322 H15 3VT 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3VT O2 C8 DOUB N N 1 3VT N C13 DOUB Y N 2 3VT N C12 SING Y N 3 3VT C8 C7 SING N N 4 3VT C8 O1 SING N N 5 3VT C13 C14 SING Y N 6 3VT O4 B SING N N 7 3VT C7 C6 SING N N 8 3VT C12 C11 DOUB Y N 9 3VT C14 N1 DOUB Y N 10 3VT B O SING N N 11 3VT B C SING N N 12 3VT C6 O SING N N 13 3VT C6 C5 SING N N 14 3VT C11 N1 SING Y N 15 3VT C11 O3 SING N N 16 3VT C C5 DOUB Y N 17 3VT C C1 SING Y N 18 3VT C5 C4 SING Y N 19 3VT C1 C2 DOUB Y N 20 3VT C4 C9 SING N N 21 3VT C4 C3 DOUB Y N 22 3VT C2 C3 SING Y N 23 3VT C2 O3 SING N N 24 3VT C3 C10 SING N N 25 3VT C1 H1 SING N N 26 3VT O4 H2 SING N N 27 3VT C7 H3 SING N N 28 3VT C7 H4 SING N N 29 3VT C9 H5 SING N N 30 3VT C9 H6 SING N N 31 3VT C9 H7 SING N N 32 3VT C10 H8 SING N N 33 3VT C10 H9 SING N N 34 3VT C10 H10 SING N N 35 3VT C12 H11 SING N N 36 3VT C13 H12 SING N N 37 3VT C14 H13 SING N N 38 3VT O1 H14 SING N N 39 3VT C6 H15 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3VT SMILES ACDLabs 12.01 "O=C(O)CC3OB(O)c2cc(Oc1nccnc1)c(c(c23)C)C" 3VT InChI InChI 1.03 "InChI=1S/C15H15BN2O5/c1-8-9(2)15-10(16(21)23-12(15)6-14(19)20)5-11(8)22-13-7-17-3-4-18-13/h3-5,7,12,21H,6H2,1-2H3,(H,19,20)/t12-/m1/s1" 3VT InChIKey InChI 1.03 MTHDAYXINWUJNY-GFCCVEGCSA-N 3VT SMILES_CANONICAL CACTVS 3.385 "Cc1c(C)c2[C@@H](CC(O)=O)OB(O)c2cc1Oc3cnccn3" 3VT SMILES CACTVS 3.385 "Cc1c(C)c2[CH](CC(O)=O)OB(O)c2cc1Oc3cnccn3" 3VT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "B1(c2cc(c(c(c2[C@H](O1)CC(=O)O)C)C)Oc3cnccn3)O" 3VT SMILES "OpenEye OEToolkits" 1.9.2 "B1(c2cc(c(c(c2C(O1)CC(=O)O)C)C)Oc3cnccn3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3VT "SYSTEMATIC NAME" ACDLabs 12.01 "[(3R)-1-hydroxy-4,5-dimethyl-6-(pyrazin-2-yloxy)-1,3-dihydro-2,1-benzoxaborol-3-yl]acetic acid" 3VT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(3R)-4,5-dimethyl-1-oxidanyl-6-pyrazin-2-yloxy-3H-2,1-benzoxaborol-3-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3VT "Create component" 2014-11-19 RCSB 3VT "Initial release" 2015-08-05 RCSB 3VT "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 3VT _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #