data_3XF # _chem_comp.id 3XF _chem_comp.name "6-({(3S,4S)-4-[2-({2,2-difluoro-2-[(2R)-piperidin-2-yl]ethyl}amino)ethoxy]pyrrolidin-3-yl}methyl)-4-methylpyridin-2-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H33 F2 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-06-25 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3XF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3NLT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3XF O1 O1 O 0 1 N N N -0.328 4.658 64.658 -1.102 -2.500 0.066 O1 3XF 1 3XF C2 C2 C 0 1 N N N -0.221 3.351 65.218 -0.093 -3.353 0.611 C2 3XF 2 3XF C3 C3 C 0 1 N N N 1.112 2.745 64.783 1.254 -3.029 -0.038 C3 3XF 3 3XF N4 N4 N 0 1 N N N 1.024 2.097 63.481 1.659 -1.666 0.328 N4 3XF 4 3XF C5 C5 C 0 1 N N N -0.007 1.094 63.246 2.951 -1.319 -0.279 C5 3XF 5 3XF C6 C6 C 0 1 N N N 0.278 0.146 62.081 3.339 0.105 0.125 C6 3XF 6 3XF F7 F7 F 0 1 N N N -0.264 0.693 61.002 2.360 0.999 -0.322 F7 3XF 7 3XF F8 F8 F 0 1 N N N 1.589 -0.041 61.891 3.442 0.183 1.518 F8 3XF 8 3XF "N1'" "N1'" N 0 1 N N N -2.744 7.124 64.126 -4.576 -3.265 -0.251 "N1'" 3XF 9 3XF N11 N11 N 0 1 N N N -0.795 -1.378 63.748 5.713 -0.473 -0.039 N11 3XF 10 3XF C12 C12 C 0 1 N N R -0.428 -1.198 62.342 4.685 0.465 -0.507 C12 3XF 11 3XF C13 C13 C 0 1 N N N 0.258 -2.436 61.733 5.072 1.890 -0.105 C13 3XF 12 3XF C14 C14 C 0 1 N N N 1.335 -3.073 62.631 6.428 2.240 -0.723 C14 3XF 13 3XF C15 C15 C 0 1 N N N 1.360 -2.635 64.112 7.470 1.219 -0.257 C15 3XF 14 3XF C16 C16 C 0 1 N N N 0.000 -2.186 64.674 7.014 -0.187 -0.655 C16 3XF 15 3XF N1A N1A N 0 1 Y N N -0.024 9.369 66.398 -4.430 1.014 -0.589 N1A 3XF 16 3XF "C2'" "C2'" C 0 1 N N N -2.334 5.761 63.840 -3.173 -3.753 -0.247 "C2'" 3XF 17 3XF C2A C2A C 0 1 Y N N 0.432 8.154 66.684 -3.220 0.979 -0.063 C2A 3XF 18 3XF "C3'" "C3'" C 0 1 N N S -1.527 5.307 65.057 -2.405 -2.721 0.608 "C3'" 3XF 19 3XF C3A C3A C 0 1 Y N N 1.126 7.947 67.866 -2.672 2.101 0.526 C3A 3XF 20 3XF "C4'" "C4'" C 0 1 N N S -1.243 6.564 65.862 -3.245 -1.429 0.527 "C4'" 3XF 21 3XF C4A C4A C 0 1 Y N N 1.323 9.022 68.727 -3.407 3.278 0.562 C4A 3XF 22 3XF "C5'" "C5'" C 0 1 N N N -2.227 7.619 65.380 -4.450 -1.789 -0.369 "C5'" 3XF 23 3XF C5A C5A C 0 1 Y N N 0.829 10.276 68.396 -4.672 3.284 0.003 C5A 3XF 24 3XF C6A C6A C 0 1 Y N N 0.150 10.430 67.201 -5.162 2.117 -0.574 C6A 3XF 25 3XF N6A N6A N 0 1 N N N -0.358 11.624 66.795 -6.431 2.109 -1.140 N6A 3XF 26 3XF C7A C7A C 0 1 N N N 0.173 7.064 65.686 -2.427 -0.302 -0.106 C7A 3XF 27 3XF C8A C8A C 0 1 N N N 2.054 8.815 70.023 -2.839 4.521 1.198 C8A 3XF 28 3XF H2 H2 H 0 1 N N N -0.262 3.411 66.316 -0.025 -3.194 1.687 H2 3XF 29 3XF H2A H2A H 0 1 N N N -1.050 2.723 64.860 -0.352 -4.393 0.413 H2A 3XF 30 3XF H3 H3 H 0 1 N N N 1.860 3.550 64.724 2.005 -3.738 0.311 H3 3XF 31 3XF H3A H3A H 0 1 N N N 1.415 1.995 65.528 1.162 -3.102 -1.122 H3A 3XF 32 3XF HN4 HN4 H 0 1 N N N 0.862 2.826 62.816 0.949 -0.996 0.072 HN4 3XF 33 3XF H5 H5 H 0 1 N N N -0.098 0.486 64.158 3.714 -2.016 0.069 H5 3XF 34 3XF H5A H5A H 0 1 N N N -0.946 1.623 63.026 2.871 -1.380 -1.364 H5A 3XF 35 3XF "HN1'" "HN1'" H 0 0 N N N -2.406 7.714 63.393 -5.090 -3.647 -1.031 "HN1'" 3XF 36 3XF HN11 HN11 H 0 0 N N N -0.801 -0.458 64.139 5.779 -0.463 0.968 HN11 3XF 37 3XF H12 H12 H 0 1 N N N -1.366 -1.121 61.773 4.605 0.404 -1.592 H12 3XF 38 3XF H13 H13 H 0 1 N N N -0.517 -3.194 61.547 4.317 2.588 -0.466 H13 3XF 39 3XF H13A H13A H 0 0 N N N 0.741 -2.126 60.795 5.139 1.956 0.981 H13A 3XF 40 3XF H14 H14 H 0 1 N N N 1.164 -4.160 62.619 6.352 2.212 -1.810 H14 3XF 41 3XF H14A H14A H 0 0 N N N 2.312 -2.809 62.200 6.728 3.238 -0.403 H14A 3XF 42 3XF H15 H15 H 0 1 N N N 1.703 -3.492 64.710 8.429 1.437 -0.728 H15 3XF 43 3XF H15A H15A H 0 0 N N N 2.055 -1.787 64.199 7.575 1.274 0.826 H15A 3XF 44 3XF H16 H16 H 0 1 N N N 0.188 -1.582 65.574 7.747 -0.917 -0.313 H16 3XF 45 3XF H16A H16A H 0 0 N N N -0.579 -3.088 64.919 6.923 -0.245 -1.740 H16A 3XF 46 3XF "H2'" "H2'" H 0 1 N N N -3.211 5.114 63.690 -3.115 -4.741 0.208 "H2'" 3XF 47 3XF "H2'A" "H2'A" H 0 0 N N N -1.719 5.722 62.929 -2.776 -3.776 -1.262 "H2'A" 3XF 48 3XF "H3'" "H3'" H 0 1 N N N -2.081 4.572 65.659 -2.332 -3.063 1.640 "H3'" 3XF 49 3XF H3AA H3AA H 0 0 N N N 1.507 6.968 68.114 -1.681 2.062 0.954 H3AA 3XF 50 3XF "H4'" "H4'" H 0 1 N N N -1.357 6.345 66.934 -3.586 -1.137 1.520 "H4'" 3XF 51 3XF "H5'" "H5'" H 0 1 N N N -1.724 8.587 65.240 -4.253 -1.506 -1.403 "H5'" 3XF 52 3XF "H5'A" "H5'A" H 0 0 N N N -3.039 7.758 66.109 -5.353 -1.300 -0.006 "H5'A" 3XF 53 3XF H5AA H5AA H 0 0 N N N 0.972 11.116 69.059 -5.271 4.183 0.014 H5AA 3XF 54 3XF HN6A HN6A H 0 0 N N N -0.807 11.512 65.909 -6.778 1.298 -1.544 HN6A 3XF 55 3XF HN6B HN6B H 0 0 N N N -1.024 11.949 67.467 -6.971 2.915 -1.132 HN6B 3XF 56 3XF H7A H7A H 0 1 N N N 0.302 7.457 64.667 -2.201 -0.555 -1.142 H7A 3XF 57 3XF H7AA H7AA H 0 0 N N N 0.880 6.237 65.849 -1.498 -0.172 0.448 H7AA 3XF 58 3XF H8A H8A H 0 1 N N N 3.130 8.986 69.869 -2.301 5.099 0.447 H8A 3XF 59 3XF H8AA H8AA H 0 0 N N N 1.674 9.522 70.775 -3.651 5.123 1.607 H8AA 3XF 60 3XF H8AB H8AB H 0 0 N N N 1.893 7.785 70.374 -2.156 4.240 1.999 H8AB 3XF 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3XF O1 "C3'" SING N N 1 3XF O1 C2 SING N N 2 3XF C3 C2 SING N N 3 3XF C2 H2 SING N N 4 3XF C2 H2A SING N N 5 3XF N4 C3 SING N N 6 3XF C3 H3 SING N N 7 3XF C3 H3A SING N N 8 3XF C5 N4 SING N N 9 3XF N4 HN4 SING N N 10 3XF C6 C5 SING N N 11 3XF C5 H5 SING N N 12 3XF C5 H5A SING N N 13 3XF F7 C6 SING N N 14 3XF F8 C6 SING N N 15 3XF C6 C12 SING N N 16 3XF "C2'" "N1'" SING N N 17 3XF "N1'" "C5'" SING N N 18 3XF "N1'" "HN1'" SING N N 19 3XF C12 N11 SING N N 20 3XF N11 C16 SING N N 21 3XF N11 HN11 SING N N 22 3XF C13 C12 SING N N 23 3XF C12 H12 SING N N 24 3XF C13 C14 SING N N 25 3XF C13 H13 SING N N 26 3XF C13 H13A SING N N 27 3XF C14 C15 SING N N 28 3XF C14 H14 SING N N 29 3XF C14 H14A SING N N 30 3XF C15 C16 SING N N 31 3XF C15 H15 SING N N 32 3XF C15 H15A SING N N 33 3XF C16 H16 SING N N 34 3XF C16 H16A SING N N 35 3XF N1A C2A DOUB Y N 36 3XF N1A C6A SING Y N 37 3XF "C2'" "C3'" SING N N 38 3XF "C2'" "H2'" SING N N 39 3XF "C2'" "H2'A" SING N N 40 3XF C7A C2A SING N N 41 3XF C2A C3A SING Y N 42 3XF "C3'" "C4'" SING N N 43 3XF "C3'" "H3'" SING N N 44 3XF C3A C4A DOUB Y N 45 3XF C3A H3AA SING N N 46 3XF "C5'" "C4'" SING N N 47 3XF C7A "C4'" SING N N 48 3XF "C4'" "H4'" SING N N 49 3XF C5A C4A SING Y N 50 3XF C4A C8A SING N N 51 3XF "C5'" "H5'" SING N N 52 3XF "C5'" "H5'A" SING N N 53 3XF C6A C5A DOUB Y N 54 3XF C5A H5AA SING N N 55 3XF N6A C6A SING N N 56 3XF N6A HN6A SING N N 57 3XF N6A HN6B SING N N 58 3XF C7A H7A SING N N 59 3XF C7A H7AA SING N N 60 3XF C8A H8A SING N N 61 3XF C8A H8AA SING N N 62 3XF C8A H8AB SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3XF SMILES ACDLabs 12.01 "FC(F)(C1NCCCC1)CNCCOC3C(Cc2nc(N)cc(c2)C)CNC3" 3XF SMILES_CANONICAL CACTVS 3.370 "Cc1cc(N)nc(C[C@H]2CNC[C@H]2OCCNCC(F)(F)[C@H]3CCCCN3)c1" 3XF SMILES CACTVS 3.370 "Cc1cc(N)nc(C[CH]2CNC[CH]2OCCNCC(F)(F)[CH]3CCCCN3)c1" 3XF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)C[C@H]2CNC[C@H]2OCCNCC([C@H]3CCCCN3)(F)F" 3XF SMILES "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)CC2CNCC2OCCNCC(C3CCCCN3)(F)F" 3XF InChI InChI 1.03 "InChI=1S/C20H33F2N5O/c1-14-8-16(27-19(23)9-14)10-15-11-25-12-17(15)28-7-6-24-13-20(21,22)18-4-2-3-5-26-18/h8-9,15,17-18,24-26H,2-7,10-13H2,1H3,(H2,23,27)/t15-,17+,18+/m0/s1" 3XF InChIKey InChI 1.03 PYDITBVREMCKIX-CGTJXYLNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3XF "SYSTEMATIC NAME" ACDLabs 12.01 "6-({(3S,4S)-4-[2-({2,2-difluoro-2-[(2R)-piperidin-2-yl]ethyl}amino)ethoxy]pyrrolidin-3-yl}methyl)-4-methylpyridin-2-amine" 3XF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "6-[[(3S,4S)-4-[2-[[2,2-difluoro-2-[(2R)-piperidin-2-yl]ethyl]amino]ethoxy]pyrrolidin-3-yl]methyl]-4-methyl-pyridin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3XF "Create component" 2010-06-25 RCSB 3XF "Modify aromatic_flag" 2011-06-04 RCSB 3XF "Modify descriptor" 2011-06-04 RCSB #