data_3YC # _chem_comp.id 3YC _chem_comp.name "(S)-2-({5-[4-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]-pyrimidin-6-yl)butyl]thiophene-3-carbonyl}amino)pentanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-12-10 _chem_comp.pdbx_modified_date 2016-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3YC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZYY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3YC N1 N1 N 0 1 N N N 25.694 -10.730 26.837 8.375 -1.412 0.956 N1 3YC 1 3YC C2 C1 C 0 1 N N N 24.599 -10.859 26.090 9.554 -0.832 0.954 C2 3YC 2 3YC N3 N2 N 0 1 N N N 23.976 -12.047 25.996 9.785 0.340 0.297 N3 3YC 3 3YC C4 C2 C 0 1 N N N 24.418 -13.139 26.664 8.786 0.947 -0.382 C4 3YC 4 3YC N5 N3 N 0 1 Y N N 27.239 -11.871 28.316 6.032 -1.243 0.142 N5 3YC 5 3YC C6 C3 C 0 1 Y N N 27.353 -13.115 28.788 5.372 -0.320 -0.630 C6 3YC 6 3YC C7 C4 C 0 1 Y N N 26.315 -13.887 28.270 6.219 0.661 -0.983 C7 3YC 7 3YC C8 C5 C 0 1 Y N N 25.560 -13.024 27.451 7.513 0.334 -0.388 C8 3YC 8 3YC C9 C6 C 0 1 Y N N 26.182 -11.774 27.523 7.334 -0.872 0.306 C9 3YC 9 3YC O10 O1 O 0 1 N N N 23.812 -14.197 26.555 8.978 1.995 -0.974 O10 3YC 10 3YC N11 N4 N 0 1 N N N 24.092 -9.733 25.372 10.587 -1.426 1.636 N11 3YC 11 3YC C12 C7 C 0 1 Y N N 26.399 -11.047 33.971 -1.535 0.155 0.584 C12 3YC 12 3YC C13 C8 C 0 1 Y N N 25.394 -10.161 34.415 -2.867 0.321 0.051 C13 3YC 13 3YC C14 C9 C 0 1 Y N N 24.115 -10.634 34.374 -2.978 1.390 -0.783 C14 3YC 14 3YC S15 S1 S 0 1 Y N N 24.237 -12.221 33.752 -1.486 2.201 -0.930 S15 3YC 15 3YC C16 C10 C 0 1 Y N N 25.931 -12.258 33.574 -0.685 1.082 0.159 C16 3YC 16 3YC C17 C11 C 0 1 N N N 25.721 -8.832 34.861 -3.989 -0.575 0.376 C17 3YC 17 3YC O18 O2 O 0 1 N N N 24.862 -8.140 35.387 -3.819 -1.514 1.130 O18 3YC 18 3YC N19 N5 N 0 1 N N N 27.051 -8.335 34.649 -5.205 -0.354 -0.163 N19 3YC 19 3YC C20 C12 C 0 1 N N S 27.453 -7.099 35.018 -6.321 -1.246 0.161 C20 3YC 20 3YC C21 C13 C 0 1 N N N 28.815 -7.147 35.402 -7.642 -0.496 -0.022 C21 3YC 21 3YC C22 C14 C 0 1 N N N 28.953 -7.352 36.871 -7.727 0.643 0.996 C22 3YC 22 3YC C23 C15 C 0 1 N N N 30.321 -7.872 37.162 -9.028 1.382 0.816 C23 3YC 23 3YC O24 O3 O 0 1 N N N 31.336 -7.246 36.748 -9.808 1.033 -0.038 O24 3YC 24 3YC O25 O4 O 0 1 N N N 30.459 -8.940 37.819 -9.321 2.428 1.605 O25 3YC 25 3YC C26 C16 C 0 1 N N N 27.336 -6.198 33.934 -6.291 -2.441 -0.757 C26 3YC 26 3YC O27 O5 O 0 1 N N N 26.870 -5.045 34.133 -7.226 -3.398 -0.643 O27 3YC 27 3YC O28 O6 O 0 1 N N N 27.699 -6.525 32.767 -5.426 -2.539 -1.594 O28 3YC 28 3YC C29 C17 C 0 1 N N N 28.420 -13.586 29.707 3.919 -0.397 -1.022 C29 3YC 29 3YC C30 C18 C 0 1 N N N 27.784 -14.072 30.965 3.081 0.419 -0.036 C30 3YC 30 3YC C31 C19 C 0 1 N N N 27.355 -12.898 31.768 1.606 0.342 -0.435 C31 3YC 31 3YC C32 C20 C 0 1 N N N 26.761 -13.375 33.051 0.768 1.158 0.551 C32 3YC 32 3YC H1 H1 H 0 1 N N N 23.164 -12.126 25.417 10.669 0.740 0.317 H1 3YC 33 3YC H2 H2 H 0 1 N N N 27.863 -11.119 28.531 5.631 -2.043 0.518 H2 3YC 34 3YC H3 H3 H 0 1 N N N 26.127 -14.934 28.458 5.988 1.524 -1.589 H3 3YC 35 3YC H4 H4 H 0 1 N N N 24.559 -8.851 25.431 10.440 -2.260 2.109 H4 3YC 36 3YC H5 H5 H 0 1 N N N 23.270 -9.827 24.810 11.464 -1.011 1.645 H5 3YC 37 3YC H6 H6 H 0 1 N N N 27.447 -10.785 33.949 -1.260 -0.639 1.263 H6 3YC 38 3YC H7 H7 H 0 1 N N N 23.216 -10.115 34.672 -3.889 1.685 -1.283 H7 3YC 39 3YC H8 H8 H 0 1 N N N 27.715 -8.936 34.204 -5.341 0.394 -0.764 H8 3YC 40 3YC H9 H9 H 0 1 N N N 26.848 -6.736 35.862 -6.233 -1.579 1.195 H9 3YC 41 3YC H10 H10 H 0 1 N N N 29.307 -7.978 34.876 -7.691 -0.087 -1.031 H10 3YC 42 3YC H11 H11 H 0 1 N N N 29.300 -6.199 35.125 -8.474 -1.183 0.132 H11 3YC 43 3YC H12 H12 H 0 1 N N N 28.803 -6.395 37.393 -7.678 0.234 2.005 H12 3YC 44 3YC H13 H13 H 0 1 N N N 28.202 -8.078 37.214 -6.895 1.330 0.842 H13 3YC 45 3YC H14 H14 H 0 1 N N N 31.384 -9.136 37.916 -10.167 2.870 1.452 H14 3YC 46 3YC H15 H15 H 0 1 N N N 26.862 -4.561 33.316 -7.165 -4.146 -1.254 H15 3YC 47 3YC H16 H16 H 0 1 N N N 28.981 -14.406 29.234 3.793 0.006 -2.027 H16 3YC 48 3YC H17 H17 H 0 1 N N N 29.106 -12.757 29.935 3.592 -1.436 -1.003 H17 3YC 49 3YC H18 H18 H 0 1 N N N 26.909 -14.693 30.721 3.208 0.017 0.969 H18 3YC 50 3YC H19 H19 H 0 1 N N N 28.508 -14.668 31.539 3.408 1.459 -0.055 H19 3YC 51 3YC H20 H20 H 0 1 N N N 28.225 -12.259 31.980 1.479 0.745 -1.439 H20 3YC 52 3YC H21 H21 H 0 1 N N N 26.605 -12.322 31.206 1.279 -0.697 -0.416 H21 3YC 53 3YC H22 H22 H 0 1 N N N 26.135 -14.262 32.873 1.095 2.198 0.533 H22 3YC 54 3YC H23 H23 H 0 1 N N N 27.557 -13.625 33.768 0.895 0.756 1.556 H23 3YC 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3YC N11 C2 SING N N 1 3YC N3 C2 SING N N 2 3YC N3 C4 SING N N 3 3YC C2 N1 DOUB N N 4 3YC O10 C4 DOUB N N 5 3YC C4 C8 SING N N 6 3YC N1 C9 SING N N 7 3YC C8 C9 DOUB Y N 8 3YC C8 C7 SING Y N 9 3YC C9 N5 SING Y N 10 3YC C7 C6 DOUB Y N 11 3YC N5 C6 SING Y N 12 3YC C6 C29 SING N N 13 3YC C29 C30 SING N N 14 3YC C30 C31 SING N N 15 3YC C31 C32 SING N N 16 3YC O28 C26 DOUB N N 17 3YC C32 C16 SING N N 18 3YC C16 S15 SING Y N 19 3YC C16 C12 DOUB Y N 20 3YC S15 C14 SING Y N 21 3YC C26 O27 SING N N 22 3YC C26 C20 SING N N 23 3YC C12 C13 SING Y N 24 3YC C14 C13 DOUB Y N 25 3YC C13 C17 SING N N 26 3YC N19 C17 SING N N 27 3YC N19 C20 SING N N 28 3YC C17 O18 DOUB N N 29 3YC C20 C21 SING N N 30 3YC C21 C22 SING N N 31 3YC O24 C23 DOUB N N 32 3YC C22 C23 SING N N 33 3YC C23 O25 SING N N 34 3YC N3 H1 SING N N 35 3YC N5 H2 SING N N 36 3YC C7 H3 SING N N 37 3YC N11 H4 SING N N 38 3YC N11 H5 SING N N 39 3YC C12 H6 SING N N 40 3YC C14 H7 SING N N 41 3YC N19 H8 SING N N 42 3YC C20 H9 SING N N 43 3YC C21 H10 SING N N 44 3YC C21 H11 SING N N 45 3YC C22 H12 SING N N 46 3YC C22 H13 SING N N 47 3YC O25 H14 SING N N 48 3YC O27 H15 SING N N 49 3YC C29 H16 SING N N 50 3YC C29 H17 SING N N 51 3YC C30 H18 SING N N 52 3YC C30 H19 SING N N 53 3YC C31 H20 SING N N 54 3YC C31 H21 SING N N 55 3YC C32 H22 SING N N 56 3YC C32 H23 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3YC SMILES ACDLabs 12.01 "N=2c3nc(CCCCc1cc(C(=O)NC(CCC(O)=O)C(O)=O)cs1)cc3C(NC=2N)=O" 3YC InChI InChI 1.03 "InChI=1S/C20H23N5O6S/c21-20-24-16-13(18(29)25-20)8-11(22-16)3-1-2-4-12-7-10(9-32-12)17(28)23-14(19(30)31)5-6-15(26)27/h7-9,14H,1-6H2,(H,23,28)(H,26,27)(H,30,31)(H4,21,22,24,25,29)/t14-/m0/s1" 3YC InChIKey InChI 1.03 JBVKQLSCSCXKDY-AWEZNQCLSA-N 3YC SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2[nH]c(CCCCc3scc(c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1" 3YC SMILES CACTVS 3.385 "NC1=Nc2[nH]c(CCCCc3scc(c3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1" 3YC SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(csc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O" 3YC SMILES "OpenEye OEToolkits" 1.9.2 "c1c(csc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3YC "SYSTEMATIC NAME" ACDLabs 12.01 "N-({5-[4-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-3-yl}carbonyl)-L-glutamic acid" 3YC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[5-[4-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-3-yl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3YC "Create component" 2014-12-10 RCSB 3YC "Modify name" 2015-06-09 RCSB 3YC "Initial release" 2016-04-20 RCSB #