data_3YE # _chem_comp.id 3YE _chem_comp.name "(S)-2-(8-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)octanamido)pentanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-12-10 _chem_comp.pdbx_modified_date 2020-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3YE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZZ0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3YE N1 N1 N 0 1 N N N -22.213 16.911 -26.485 -8.532 -1.246 0.264 N1 3YE 1 3YE C2 C1 C 0 1 N N N -21.798 15.874 -25.685 -9.511 -0.885 -0.534 C2 3YE 2 3YE N3 N2 N 0 1 N N N -22.537 14.709 -25.607 -9.487 0.290 -1.226 N3 3YE 3 3YE C4 C2 C 0 1 N N N -23.693 14.565 -26.354 -8.434 1.129 -1.104 C4 3YE 4 3YE N5 N3 N 0 1 Y N N -23.989 17.672 -28.116 -6.318 -0.587 1.183 N5 3YE 5 3YE C6 C3 C 0 1 Y N N -25.065 17.053 -28.584 -5.516 0.512 0.999 C6 3YE 6 3YE C7 C4 C 0 1 Y N N -25.176 15.867 -28.051 -6.104 1.361 0.140 C7 3YE 7 3YE C8 C5 C 0 1 Y N N -24.136 15.613 -27.187 -7.375 0.752 -0.249 C8 3YE 8 3YE C9 C6 C 0 1 Y N N -23.329 16.793 -27.218 -7.453 -0.468 0.437 C9 3YE 9 3YE O10 O1 O 0 1 N N N -24.288 13.509 -26.237 -8.399 2.182 -1.717 O10 3YE 10 3YE N11 N4 N 0 1 N N N -20.625 16.009 -24.921 -10.593 -1.717 -0.676 N11 3YE 11 3YE C12 C7 C 0 1 N N N -21.954 17.151 -35.711 3.236 -0.020 0.875 C12 3YE 12 3YE C13 C8 C 0 1 N N N -22.244 16.452 -34.365 1.880 -0.244 0.203 C13 3YE 13 3YE C14 C9 C 0 1 N N N -23.084 17.422 -33.507 0.764 0.230 1.137 C14 3YE 14 3YE C17 C10 C 0 1 N N N -20.873 18.225 -35.521 4.335 -0.487 -0.045 C17 3YE 15 3YE O18 O2 O 0 1 N N N -20.842 19.182 -36.296 4.060 -0.953 -1.130 O18 3YE 16 3YE N19 N5 N 0 1 N N N -19.922 18.074 -34.429 5.623 -0.387 0.339 N19 3YE 17 3YE C20 C11 C 0 1 N N S -18.851 19.011 -34.132 6.691 -0.841 -0.555 C20 3YE 18 3YE C21 C12 C 0 1 N N N -17.937 19.179 -35.329 7.986 -0.097 -0.222 C21 3YE 19 3YE C22 C13 C 0 1 N N N -17.529 17.806 -35.848 7.810 1.393 -0.525 C22 3YE 20 3YE C23 C14 C 0 1 N N N -17.690 17.753 -37.345 9.085 2.126 -0.197 C23 3YE 21 3YE O24 O3 O 0 1 N N N -17.979 18.809 -37.992 10.037 1.520 0.235 O24 3YE 22 3YE O25 O4 O 0 1 N N N -17.534 16.649 -37.966 9.163 3.453 -0.385 O25 3YE 23 3YE C26 C15 C 0 1 N N N -19.409 20.336 -33.671 6.903 -2.322 -0.373 C26 3YE 24 3YE O27 O5 O 0 1 N N N -19.205 20.726 -32.477 7.838 -2.960 -1.094 O27 3YE 25 3YE O28 O6 O 0 1 N N N -20.077 21.055 -34.458 6.230 -2.936 0.421 O28 3YE 26 3YE C29 C16 C 0 1 N N N -26.053 17.669 -29.581 -4.180 0.732 1.660 C29 3YE 27 3YE C30 C17 C 0 1 N N N -25.855 17.059 -30.938 -3.064 0.258 0.727 C30 3YE 28 3YE C16 C18 C 0 1 N N N -24.490 17.439 -31.446 -1.708 0.481 1.398 C16 3YE 29 3YE C15 C19 C 0 1 N N N -24.170 16.633 -32.721 -0.592 0.007 0.465 C15 3YE 30 3YE H1 H1 H 0 1 N N N -22.235 13.967 -25.008 -10.228 0.524 -1.807 H1 3YE 31 3YE H2 H2 H 0 1 N N N -23.694 18.597 -28.355 -6.107 -1.339 1.758 H2 3YE 32 3YE H3 H3 H 0 1 N N N -25.979 15.176 -28.261 -5.713 2.310 -0.197 H3 3YE 33 3YE H4 H4 H 0 1 N N N -20.097 16.857 -24.961 -10.626 -2.557 -0.191 H4 3YE 34 3YE H5 H5 H 0 1 N N N -20.319 15.257 -24.337 -11.324 -1.466 -1.261 H5 3YE 35 3YE H6 H6 H 0 1 N N N -22.875 17.623 -36.083 3.366 1.041 1.086 H6 3YE 36 3YE H7 H7 H 0 1 N N N -21.604 16.406 -36.441 3.278 -0.584 1.806 H7 3YE 37 3YE H8 H8 H 0 1 N N N -22.806 15.522 -34.539 1.838 0.320 -0.729 H8 3YE 38 3YE H9 H9 H 0 1 N N N -21.299 16.219 -33.852 1.750 -1.305 -0.009 H9 3YE 39 3YE H10 H10 H 0 1 N N N -22.426 17.943 -32.796 0.806 -0.334 2.068 H10 3YE 40 3YE H11 H11 H 0 1 N N N -23.572 18.159 -34.162 0.894 1.292 1.348 H11 3YE 41 3YE H12 H12 H 0 1 N N N -20.012 17.269 -33.842 5.843 -0.015 1.207 H12 3YE 42 3YE H13 H13 H 0 1 N N N -18.248 18.599 -33.309 6.411 -0.638 -1.588 H13 3YE 43 3YE H14 H14 H 0 1 N N N -17.039 19.740 -35.030 8.219 -0.227 0.835 H14 3YE 44 3YE H15 H15 H 0 1 N N N -18.466 19.729 -36.121 8.800 -0.497 -0.825 H15 3YE 45 3YE H16 H16 H 0 1 N N N -18.166 17.038 -35.386 7.577 1.523 -1.582 H16 3YE 46 3YE H17 H17 H 0 1 N N N -16.477 17.616 -35.588 6.995 1.793 0.079 H17 3YE 47 3YE H18 H18 H 0 1 N N N -17.667 16.787 -38.896 10.002 3.879 -0.160 H18 3YE 48 3YE H19 H19 H 0 1 N N N -19.620 21.570 -32.344 7.937 -3.910 -0.943 H19 3YE 49 3YE H20 H20 H 0 1 N N N -25.883 18.754 -29.640 -4.050 1.793 1.872 H20 3YE 50 3YE H21 H21 H 0 1 N N N -27.082 17.477 -29.241 -4.138 0.168 2.592 H21 3YE 51 3YE H22 H22 H 0 1 N N N -26.624 17.435 -31.628 -3.194 -0.804 0.515 H22 3YE 52 3YE H23 H23 H 0 1 N N N -25.931 15.964 -30.866 -3.106 0.822 -0.205 H23 3YE 53 3YE H24 H24 H 0 1 N N N -23.738 17.218 -30.675 -1.578 1.542 1.610 H24 3YE 54 3YE H25 H25 H 0 1 N N N -24.472 18.514 -31.678 -1.666 -0.083 2.330 H25 3YE 55 3YE H26 H26 H 0 1 N N N -25.076 16.526 -33.336 -0.634 0.571 -0.467 H26 3YE 56 3YE H27 H27 H 0 1 N N N -23.790 15.637 -32.451 -0.722 -1.054 0.253 H27 3YE 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3YE O24 C23 DOUB N N 1 3YE O25 C23 SING N N 2 3YE C23 C22 SING N N 3 3YE O18 C17 DOUB N N 4 3YE C22 C21 SING N N 5 3YE C12 C17 SING N N 6 3YE C12 C13 SING N N 7 3YE C17 N19 SING N N 8 3YE C21 C20 SING N N 9 3YE O28 C26 DOUB N N 10 3YE N19 C20 SING N N 11 3YE C13 C14 SING N N 12 3YE C20 C26 SING N N 13 3YE C26 O27 SING N N 14 3YE C14 C15 SING N N 15 3YE C15 C16 SING N N 16 3YE C16 C30 SING N N 17 3YE C30 C29 SING N N 18 3YE C29 C6 SING N N 19 3YE C6 N5 SING Y N 20 3YE C6 C7 DOUB Y N 21 3YE N5 C9 SING Y N 22 3YE C7 C8 SING Y N 23 3YE C9 C8 DOUB Y N 24 3YE C9 N1 SING N N 25 3YE C8 C4 SING N N 26 3YE N1 C2 DOUB N N 27 3YE C4 O10 DOUB N N 28 3YE C4 N3 SING N N 29 3YE C2 N3 SING N N 30 3YE C2 N11 SING N N 31 3YE N3 H1 SING N N 32 3YE N5 H2 SING N N 33 3YE C7 H3 SING N N 34 3YE N11 H4 SING N N 35 3YE N11 H5 SING N N 36 3YE C12 H6 SING N N 37 3YE C12 H7 SING N N 38 3YE C13 H8 SING N N 39 3YE C13 H9 SING N N 40 3YE C14 H10 SING N N 41 3YE C14 H11 SING N N 42 3YE N19 H12 SING N N 43 3YE C20 H13 SING N N 44 3YE C21 H14 SING N N 45 3YE C21 H15 SING N N 46 3YE C22 H16 SING N N 47 3YE C22 H17 SING N N 48 3YE O25 H18 SING N N 49 3YE O27 H19 SING N N 50 3YE C29 H20 SING N N 51 3YE C29 H21 SING N N 52 3YE C30 H22 SING N N 53 3YE C30 H23 SING N N 54 3YE C16 H24 SING N N 55 3YE C16 H25 SING N N 56 3YE C15 H26 SING N N 57 3YE C15 H27 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3YE SMILES ACDLabs 12.01 "N1=C(NC(=O)c2cc(nc12)CCCCCCCC(NC(C(O)=O)CCC(=O)O)=O)N" 3YE InChI InChI 1.03 "InChI=1S/C19H27N5O6/c20-19-23-16-12(17(28)24-19)10-11(21-16)6-4-2-1-3-5-7-14(25)22-13(18(29)30)8-9-15(26)27/h10,13H,1-9H2,(H,22,25)(H,26,27)(H,29,30)(H4,20,21,23,24,28)/t13-/m0/s1" 3YE InChIKey InChI 1.03 MZFFIVGWDCAMQT-ZDUSSCGKSA-N 3YE SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2[nH]c(CCCCCCCC(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1" 3YE SMILES CACTVS 3.385 "NC1=Nc2[nH]c(CCCCCCCC(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1" 3YE SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCCC(=O)N[C@@H](CCC(=O)O)C(=O)O" 3YE SMILES "OpenEye OEToolkits" 1.9.2 "c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCCC(=O)NC(CCC(=O)O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3YE "SYSTEMATIC NAME" ACDLabs 12.01 "N-[8-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)octanoyl]-L-glutamic acid" 3YE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[8-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)octanoylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3YE "Create component" 2014-12-10 RCSB 3YE "Modify name" 2015-06-08 RCSB 3YE "Initial release" 2016-04-20 RCSB 3YE "Other modification" 2020-06-27 RCSB ##