data_3YF # _chem_comp.id 3YF _chem_comp.name "(S)-2-({4-[3-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)-propyl]-thiophene-2-carbonyl}-amino)-pentanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-12-10 _chem_comp.pdbx_modified_date 2015-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 447.465 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3YF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZZ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3YF N1 N1 N 0 1 N N N 25.652 -10.874 -23.871 7.476 -0.300 1.337 N1 3YF 1 3YF C2 C1 C 0 1 N N N 24.582 -11.017 -24.644 8.234 0.770 1.265 C2 3YF 2 3YF N3 N2 N 0 1 N N N 23.947 -12.196 -24.773 8.047 1.729 0.314 N3 3YF 3 3YF C4 C2 C 0 1 N N N 24.383 -13.307 -24.140 7.056 1.598 -0.597 C4 3YF 4 3YF N5 N3 N 0 1 Y N N 27.201 -12.027 -22.382 5.551 -1.493 0.312 N5 3YF 5 3YF C6 C3 C 0 1 Y N N 27.331 -13.270 -21.927 4.731 -1.210 -0.752 C6 3YF 6 3YF C7 C4 C 0 1 Y N N 26.309 -14.072 -22.485 5.097 -0.042 -1.305 C7 3YF 7 3YF C8 C5 C 0 1 Y N N 25.536 -13.200 -23.304 6.234 0.452 -0.531 C8 3YF 8 3YF C9 C6 C 0 1 Y N N 26.159 -11.932 -23.196 6.473 -0.501 0.469 C9 3YF 9 3YF O10 O1 O 0 1 N N N 23.801 -14.386 -24.270 6.878 2.448 -1.453 O10 3YF 10 3YF N11 N4 N 0 1 N N N 24.079 -9.906 -25.325 9.247 0.928 2.178 N11 3YF 11 3YF C12 C7 C 0 1 Y N N 26.133 -11.431 -17.581 -0.955 -1.049 -1.068 C12 3YF 12 3YF C13 C8 C 0 1 Y N N 25.400 -10.925 -16.539 -2.078 -0.754 -0.348 C13 3YF 13 3YF S14 S1 S 0 1 Y N N 24.206 -12.079 -16.190 -2.085 -1.715 1.125 S14 3YF 14 3YF C15 C9 C 0 1 Y N N 24.663 -13.221 -17.381 -0.605 -2.452 0.707 C15 3YF 15 3YF C16 C10 C 0 1 Y N N 25.742 -12.707 -18.057 -0.157 -1.995 -0.469 C16 3YF 16 3YF C17 C11 C 0 1 N N N 25.564 -9.668 -15.857 -3.111 0.209 -0.739 C17 3YF 17 3YF O18 O2 O 0 1 N N N 24.673 -9.263 -15.088 -3.005 0.824 -1.785 O18 3YF 18 3YF N19 N5 N 0 1 N N N 26.756 -8.920 -16.090 -4.178 0.415 0.058 N19 3YF 19 3YF C20 C12 C 0 1 N N S 26.924 -7.664 -15.422 -5.210 1.378 -0.333 C20 3YF 20 3YF C21 C13 C 0 1 N N N 28.135 -7.721 -14.571 -6.535 1.005 0.334 C21 3YF 21 3YF C22 C14 C 0 1 N N N 27.874 -8.525 -13.305 -7.016 -0.344 -0.204 C22 3YF 22 3YF C23 C15 C 0 1 N N N 29.180 -8.983 -12.613 -8.321 -0.712 0.454 C23 3YF 23 3YF O24 O3 O 0 1 N N N 29.234 -10.128 -12.033 -8.933 -1.863 0.134 O24 3YF 24 3YF O25 O4 O 0 1 N N N 30.229 -8.200 -12.618 -8.816 0.029 1.270 O25 3YF 25 3YF C26 C16 C 0 1 N N N 27.069 -6.590 -16.501 -4.799 2.760 0.104 C26 3YF 26 3YF O27 O5 O 0 1 N N N 26.682 -5.374 -16.254 -5.597 3.809 -0.150 O27 3YF 27 3YF O28 O6 O 0 1 N N N 27.559 -6.895 -17.648 -3.752 2.924 0.683 O28 3YF 28 3YF C29 C17 C 0 1 N N N 28.416 -13.683 -20.908 3.595 -2.078 -1.228 C29 3YF 29 3YF C30 C18 C 0 1 N N N 27.907 -13.103 -19.518 2.286 -1.592 -0.602 C30 3YF 30 3YF C31 C19 C 0 1 N N N 26.425 -13.423 -19.226 1.132 -2.473 -1.085 C31 3YF 31 3YF H1 H1 H 0 1 N N N 23.133 -12.251 -25.351 8.626 2.507 0.291 H1 3YF 32 3YF H2 H2 H 0 1 N N N 27.806 -11.268 -22.143 5.484 -2.284 0.870 H2 3YF 33 3YF H3 H3 H 0 1 N N N 26.148 -15.128 -22.324 4.639 0.440 -2.156 H3 3YF 34 3YF H4 H4 H 0 1 N N N 24.524 -9.016 -25.227 9.393 0.256 2.862 H4 3YF 35 3YF H5 H5 H 0 1 N N N 23.274 -10.001 -25.910 9.816 1.713 2.139 H5 3YF 36 3YF H6 H6 H 0 1 N N N 26.960 -10.889 -18.014 -0.719 -0.588 -2.016 H6 3YF 37 3YF H7 H7 H 0 1 N N N 24.189 -14.173 -17.567 -0.098 -3.192 1.308 H7 3YF 38 3YF H8 H8 H 0 1 N N N 27.462 -9.266 -16.708 -4.262 -0.075 0.891 H8 3YF 39 3YF H9 H9 H 0 1 N N N 26.044 -7.437 -14.803 -5.332 1.360 -1.416 H9 3YF 40 3YF H10 H10 H 0 1 N N N 28.950 -8.195 -15.137 -6.392 0.936 1.413 H10 3YF 41 3YF H11 H11 H 0 1 N N N 28.428 -6.698 -14.293 -7.281 1.770 0.115 H11 3YF 42 3YF H12 H12 H 0 1 N N N 27.303 -7.901 -12.602 -7.159 -0.275 -1.282 H12 3YF 43 3YF H13 H13 H 0 1 N N N 27.283 -9.415 -13.568 -6.270 -1.109 0.015 H13 3YF 44 3YF H14 H14 H 0 1 N N N 30.098 -10.254 -11.660 -9.768 -2.055 0.582 H14 3YF 45 3YF H15 H15 H 0 1 N N N 26.827 -4.833 -17.021 -5.291 4.676 0.149 H15 3YF 46 3YF H16 H16 H 0 1 N N N 28.507 -14.778 -20.861 3.522 -2.019 -2.314 H16 3YF 47 3YF H17 H17 H 0 1 N N N 29.388 -13.245 -21.178 3.778 -3.111 -0.932 H17 3YF 48 3YF H18 H18 H 0 1 N N N 28.522 -13.534 -18.714 2.358 -1.651 0.484 H18 3YF 49 3YF H19 H19 H 0 1 N N N 28.032 -12.010 -19.529 2.103 -0.559 -0.898 H19 3YF 50 3YF H20 H20 H 0 1 N N N 25.855 -13.180 -20.134 1.315 -3.506 -0.789 H20 3YF 51 3YF H21 H21 H 0 1 N N N 26.358 -14.503 -19.030 1.059 -2.414 -2.171 H21 3YF 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3YF N11 C2 SING N N 1 3YF N3 C2 SING N N 2 3YF N3 C4 SING N N 3 3YF C2 N1 DOUB N N 4 3YF O10 C4 DOUB N N 5 3YF C4 C8 SING N N 6 3YF N1 C9 SING N N 7 3YF C8 C9 DOUB Y N 8 3YF C8 C7 SING Y N 9 3YF C9 N5 SING Y N 10 3YF C7 C6 DOUB Y N 11 3YF N5 C6 SING Y N 12 3YF C6 C29 SING N N 13 3YF C29 C30 SING N N 14 3YF C30 C31 SING N N 15 3YF C31 C16 SING N N 16 3YF C16 C12 SING Y N 17 3YF C16 C15 DOUB Y N 18 3YF O28 C26 DOUB N N 19 3YF C12 C13 DOUB Y N 20 3YF C15 S14 SING Y N 21 3YF C13 S14 SING Y N 22 3YF C13 C17 SING N N 23 3YF C26 O27 SING N N 24 3YF C26 C20 SING N N 25 3YF N19 C17 SING N N 26 3YF N19 C20 SING N N 27 3YF C17 O18 DOUB N N 28 3YF C20 C21 SING N N 29 3YF C21 C22 SING N N 30 3YF C22 C23 SING N N 31 3YF O25 C23 DOUB N N 32 3YF C23 O24 SING N N 33 3YF N3 H1 SING N N 34 3YF N5 H2 SING N N 35 3YF C7 H3 SING N N 36 3YF N11 H4 SING N N 37 3YF N11 H5 SING N N 38 3YF C12 H6 SING N N 39 3YF C15 H7 SING N N 40 3YF N19 H8 SING N N 41 3YF C20 H9 SING N N 42 3YF C21 H10 SING N N 43 3YF C21 H11 SING N N 44 3YF C22 H12 SING N N 45 3YF C22 H13 SING N N 46 3YF O24 H14 SING N N 47 3YF O27 H15 SING N N 48 3YF C29 H16 SING N N 49 3YF C29 H17 SING N N 50 3YF C30 H18 SING N N 51 3YF C30 H19 SING N N 52 3YF C31 H20 SING N N 53 3YF C31 H21 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3YF SMILES ACDLabs 12.01 "N=2c3nc(CCCc1cc(sc1)C(=O)NC(CCC(O)=O)C(O)=O)cc3C(NC=2N)=O" 3YF InChI InChI 1.03 "InChI=1S/C19H21N5O6S/c20-19-23-15-11(16(27)24-19)7-10(21-15)3-1-2-9-6-13(31-8-9)17(28)22-12(18(29)30)4-5-14(25)26/h6-8,12H,1-5H2,(H,22,28)(H,25,26)(H,29,30)(H4,20,21,23,24,27)/t12-/m0/s1" 3YF InChIKey InChI 1.03 UNSSSMUKJOLMJV-LBPRGKRZSA-N 3YF SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2[nH]c(CCCc3csc(c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1" 3YF SMILES CACTVS 3.385 "NC1=Nc2[nH]c(CCCc3csc(c3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1" 3YF SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCc2cc3c([nH]2)N=C(NC3=O)N" 3YF SMILES "OpenEye OEToolkits" 1.9.2 "c1c(csc1C(=O)NC(CCC(=O)O)C(=O)O)CCCc2cc3c([nH]2)N=C(NC3=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3YF "SYSTEMATIC NAME" ACDLabs 12.01 "N-({4-[3-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)propyl]thiophen-2-yl}carbonyl)-L-glutamic acid" 3YF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[4-[3-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)propyl]thiophen-2-yl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3YF "Create component" 2014-12-10 RCSB 3YF "Modify name" 2015-06-09 RCSB 3YF "Initial release" 2015-12-16 RCSB #