data_3YJ # _chem_comp.id 3YJ _chem_comp.name "11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H53 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-07 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 511.779 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3YJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7R62 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3YJ N1 N1 N 0 1 N N N -34.439 8.743 14.290 10.902 -0.201 0.230 N1 3YJ 1 3YJ C4 C1 C 0 1 Y N N -27.530 2.023 26.698 -4.298 -3.605 0.775 C4 3YJ 2 3YJ C5 C2 C 0 1 Y N N -28.826 1.622 26.870 -4.497 -2.242 0.601 C5 3YJ 3 3YJ C6 C3 C 0 1 Y N N -29.157 0.194 27.048 -5.057 -1.780 -0.572 C6 3YJ 4 3YJ C7 C4 C 0 1 N N N -29.999 2.755 26.789 -4.095 -1.328 1.728 C7 3YJ 5 3YJ C8 C5 C 0 1 N N R -31.427 2.152 26.646 -4.009 0.124 1.260 C8 3YJ 6 3YJ C10 C6 C 0 1 N N S -30.563 -0.172 27.131 -5.264 -0.316 -0.830 C10 3YJ 7 3YJ C13 C7 C 0 1 N N N -32.360 -2.019 28.027 -6.697 1.455 -1.901 C13 3YJ 8 3YJ C15 C8 C 0 1 N N N -34.044 1.384 27.919 -5.469 2.899 1.326 C15 3YJ 9 3YJ C17 C9 C 0 1 N N S -34.654 -1.059 28.264 -6.902 3.658 -0.556 C17 3YJ 10 3YJ C20 C10 C 0 1 N N N -32.025 3.043 24.357 -1.515 0.058 1.138 C20 3YJ 11 3YJ C21 C11 C 0 1 N N N -32.161 2.787 22.841 -0.304 0.234 0.219 C21 3YJ 12 3YJ C22 C12 C 0 1 N N N -32.503 4.007 22.029 0.980 -0.009 1.015 C22 3YJ 13 3YJ C24 C13 C 0 1 N N N -32.700 4.901 19.706 3.474 -0.075 0.893 C24 3YJ 14 3YJ C26 C14 C 0 1 N N N -32.940 5.627 17.334 5.969 -0.142 0.770 C26 3YJ 15 3YJ C28 C15 C 0 1 N N N -32.750 7.415 15.645 8.464 -0.208 0.648 C28 3YJ 16 3YJ C1 C16 C 0 1 Y N N -28.104 -0.709 27.131 -5.432 -2.681 -1.561 C1 3YJ 17 3YJ C11 C17 C 0 1 N N S -33.046 0.521 27.542 -5.369 1.929 0.144 C11 3YJ 18 3YJ C12 C18 C 0 1 N N S -33.304 -0.918 28.466 -6.743 2.142 -0.552 C12 3YJ 19 3YJ C14 C19 C 0 1 N N N -30.776 -1.594 28.042 -6.517 -0.054 -1.652 C14 3YJ 20 3YJ C16 C20 C 0 1 N N N -35.356 0.452 28.232 -6.127 4.154 0.690 C16 3YJ 21 3YJ C18 C21 C 0 1 N N N -32.961 -0.578 29.933 -7.841 1.512 0.308 C18 3YJ 22 3YJ C19 C22 C 0 1 N N N -31.555 1.808 25.137 -2.799 0.300 0.342 C19 3YJ 23 3YJ C2 C23 C 0 1 Y N N -26.744 -0.339 27.005 -5.239 -4.035 -1.387 C2 3YJ 24 3YJ C23 C24 C 0 1 N N N -32.395 3.661 20.536 2.191 0.167 0.097 C23 3YJ 25 3YJ C25 C25 C 0 1 N N N -32.075 4.854 18.313 4.685 0.100 -0.026 C25 3YJ 26 3YJ C27 C26 C 0 1 N N N -32.391 7.016 17.065 7.180 0.034 -0.149 C27 3YJ 27 3YJ C29 C27 C 0 1 N N N -33.621 8.650 15.488 9.656 -0.035 -0.257 C29 3YJ 28 3YJ C3 C28 C 0 1 Y N N -26.488 1.084 26.781 -4.666 -4.502 -0.213 C3 3YJ 29 3YJ C30 C29 C 0 1 N N N -35.296 9.895 14.066 11.096 -0.550 1.640 C30 3YJ 30 3YJ C31 C30 C 0 1 N N N -34.399 7.659 13.319 12.061 -0.039 -0.651 C31 3YJ 31 3YJ C32 C31 C 0 1 N N N -34.142 8.169 11.901 12.521 1.420 -0.625 C32 3YJ 32 3YJ C33 C32 C 0 1 N N N -34.914 7.353 10.870 13.731 1.589 -1.546 C33 3YJ 33 3YJ C9 C33 C 0 1 N N R -31.561 0.984 27.572 -5.290 0.457 0.495 C9 3YJ 34 3YJ O1 O1 O 0 1 N N N -25.151 1.421 26.652 -4.466 -5.834 -0.034 O1 3YJ 35 3YJ O2 O2 O 0 1 N N N -35.371 -1.801 29.261 -8.283 4.010 -0.454 O2 3YJ 36 3YJ O3 O3 O 0 1 N N N -33.616 9.501 16.314 9.495 0.253 -1.424 O3 3YJ 37 3YJ H1 H1 H 0 1 N N N -27.307 3.061 26.498 -3.849 -3.968 1.687 H1 3YJ 38 3YJ H2 H2 H 0 1 N N N -29.803 3.399 25.919 -4.831 -1.403 2.528 H2 3YJ 39 3YJ H3 H3 H 0 1 N N N -29.965 3.359 27.708 -3.122 -1.637 2.109 H3 3YJ 40 3YJ H4 H4 H 0 1 N N N -32.170 2.921 26.904 -3.915 0.784 2.124 H4 3YJ 41 3YJ H5 H5 H 0 1 N N N -30.877 -0.453 26.115 -4.415 0.044 -1.411 H5 3YJ 42 3YJ H6 H6 H 0 1 N N N -32.628 -2.314 27.002 -7.629 1.633 -2.437 H6 3YJ 43 3YJ H7 H7 H 0 1 N N N -32.493 -2.877 28.702 -5.857 1.837 -2.481 H7 3YJ 44 3YJ H8 H8 H 0 1 N N N -33.747 1.941 28.820 -6.104 2.487 2.111 H8 3YJ 45 3YJ H9 H9 H 0 1 N N N -34.264 2.092 27.106 -4.481 3.138 1.717 H9 3YJ 46 3YJ H10 H10 H 0 1 N N N -34.841 -1.508 27.278 -6.471 4.080 -1.464 H10 3YJ 47 3YJ H11 H11 H 0 1 N N N -31.296 3.852 24.511 -1.522 -0.955 1.540 H11 3YJ 48 3YJ H12 H12 H 0 1 N N N -33.005 3.352 24.749 -1.455 0.774 1.958 H12 3YJ 49 3YJ H13 H13 H 0 1 N N N -32.954 2.040 22.689 -0.363 -0.482 -0.601 H13 3YJ 50 3YJ H14 H14 H 0 1 N N N -31.205 2.387 22.473 -0.297 1.247 -0.183 H14 3YJ 51 3YJ H15 H15 H 0 1 N N N -31.802 4.819 22.271 1.039 0.707 1.835 H15 3YJ 52 3YJ H16 H16 H 0 1 N N N -33.530 4.328 22.260 0.973 -1.022 1.417 H16 3YJ 53 3YJ H17 H17 H 0 1 N N N -32.310 5.782 20.236 3.534 0.640 1.713 H17 3YJ 54 3YJ H18 H18 H 0 1 N N N -33.791 4.991 19.598 3.467 -1.088 1.294 H18 3YJ 55 3YJ H19 H19 H 0 1 N N N -33.953 5.720 17.752 6.028 0.574 1.590 H19 3YJ 56 3YJ H20 H20 H 0 1 N N N -32.985 5.073 16.385 5.962 -1.155 1.172 H20 3YJ 57 3YJ H21 H21 H 0 1 N N N -33.283 6.570 15.185 8.523 0.507 1.468 H21 3YJ 58 3YJ H22 H22 H 0 1 N N N -31.811 7.597 15.101 8.456 -1.222 1.049 H22 3YJ 59 3YJ H23 H23 H 0 1 N N N -28.336 -1.750 27.301 -5.879 -2.317 -2.474 H23 3YJ 60 3YJ H24 H24 H 0 1 N N N -33.241 0.212 26.504 -4.544 2.209 -0.511 H24 3YJ 61 3YJ H25 H25 H 0 1 N N N -30.175 -2.404 27.604 -6.433 -0.569 -2.609 H25 3YJ 62 3YJ H26 H26 H 0 1 N N N -30.453 -1.417 29.079 -7.385 -0.436 -1.115 H26 3YJ 63 3YJ H27 H27 H 0 1 N N N -35.814 0.707 29.199 -6.815 4.616 1.399 H27 3YJ 64 3YJ H28 H28 H 0 1 N N N -36.111 0.532 27.436 -5.360 4.869 0.393 H28 3YJ 65 3YJ H29 H29 H 0 1 N N N -33.111 -1.468 30.561 -7.686 0.435 0.364 H29 3YJ 66 3YJ H30 H30 H 0 1 N N N -31.911 -0.256 29.999 -7.806 1.937 1.311 H30 3YJ 67 3YJ H31 H31 H 0 1 N N N -33.616 0.233 30.284 -8.814 1.716 -0.139 H31 3YJ 68 3YJ H32 H32 H 0 1 N N N -32.286 0.996 25.009 -2.858 -0.415 -0.478 H32 3YJ 69 3YJ H33 H33 H 0 1 N N N -30.576 1.485 24.753 -2.791 1.313 -0.060 H33 3YJ 70 3YJ H34 H34 H 0 1 N N N -25.945 -1.062 27.070 -5.533 -4.729 -2.161 H34 3YJ 71 3YJ H35 H35 H 0 1 N N N -33.117 2.868 20.290 2.131 -0.549 -0.724 H35 3YJ 72 3YJ H36 H36 H 0 1 N N N -31.376 3.312 20.313 2.198 1.180 -0.305 H36 3YJ 73 3YJ H37 H37 H 0 1 N N N -31.996 3.808 17.983 4.626 -0.615 -0.846 H37 3YJ 74 3YJ H38 H38 H 0 1 N N N -31.072 5.304 18.348 4.693 1.114 -0.428 H38 3YJ 75 3YJ H39 H39 H 0 1 N N N -31.297 7.011 17.183 7.120 -0.682 -0.969 H39 3YJ 76 3YJ H40 H40 H 0 1 N N N -32.833 7.732 17.774 7.187 1.047 -0.550 H40 3YJ 77 3YJ H41 H41 H 0 1 N N N -35.189 10.601 14.903 11.106 -1.634 1.748 H41 3YJ 78 3YJ H42 H42 H 0 1 N N N -35.005 10.392 13.129 12.045 -0.141 1.987 H42 3YJ 79 3YJ H43 H43 H 0 1 N N N -36.343 9.565 13.996 10.282 -0.133 2.233 H43 3YJ 80 3YJ H44 H44 H 0 1 N N N -35.364 7.131 13.337 12.871 -0.682 -0.308 H44 3YJ 81 3YJ H45 H45 H 0 1 N N N -33.594 6.963 13.597 11.785 -0.315 -1.669 H45 3YJ 82 3YJ H46 H46 H 0 1 N N N -33.066 8.096 11.683 11.710 2.063 -0.969 H46 3YJ 83 3YJ H47 H47 H 0 1 N N N -34.458 9.220 11.836 12.797 1.696 0.393 H47 3YJ 84 3YJ H48 H48 H 0 1 N N N -34.708 7.744 9.863 13.455 1.314 -2.563 H48 3YJ 85 3YJ H49 H49 H 0 1 N N N -34.600 6.300 10.926 14.059 2.629 -1.527 H49 3YJ 86 3YJ H50 H50 H 0 1 N N N -35.992 7.425 11.078 14.542 0.947 -1.202 H50 3YJ 87 3YJ H51 H51 H 0 1 N N N -31.305 1.293 28.596 -6.158 0.155 1.081 H51 3YJ 88 3YJ H52 H52 H 0 1 N N N -24.617 0.640 26.740 -5.210 -6.292 0.382 H52 3YJ 89 3YJ H53 H53 H 0 1 N N N -35.011 -2.678 29.324 -8.447 4.964 -0.451 H53 3YJ 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3YJ C33 C32 SING N N 1 3YJ C32 C31 SING N N 2 3YJ C31 N1 SING N N 3 3YJ C30 N1 SING N N 4 3YJ N1 C29 SING N N 5 3YJ C29 C28 SING N N 6 3YJ C29 O3 DOUB N N 7 3YJ C28 C27 SING N N 8 3YJ C27 C26 SING N N 9 3YJ C26 C25 SING N N 10 3YJ C25 C24 SING N N 11 3YJ C24 C23 SING N N 12 3YJ C23 C22 SING N N 13 3YJ C22 C21 SING N N 14 3YJ C21 C20 SING N N 15 3YJ C20 C19 SING N N 16 3YJ C19 C8 SING N N 17 3YJ C8 C7 SING N N 18 3YJ C8 C9 SING N N 19 3YJ O1 C3 SING N N 20 3YJ C4 C3 DOUB Y N 21 3YJ C4 C5 SING Y N 22 3YJ C3 C2 SING Y N 23 3YJ C7 C5 SING N N 24 3YJ C5 C6 DOUB Y N 25 3YJ C2 C1 DOUB Y N 26 3YJ C6 C1 SING Y N 27 3YJ C6 C10 SING N N 28 3YJ C10 C9 SING N N 29 3YJ C10 C14 SING N N 30 3YJ C11 C9 SING N N 31 3YJ C11 C15 SING N N 32 3YJ C11 C12 SING N N 33 3YJ C15 C16 SING N N 34 3YJ C13 C14 SING N N 35 3YJ C13 C12 SING N N 36 3YJ C16 C17 SING N N 37 3YJ C17 C12 SING N N 38 3YJ C17 O2 SING N N 39 3YJ C12 C18 SING N N 40 3YJ C4 H1 SING N N 41 3YJ C7 H2 SING N N 42 3YJ C7 H3 SING N N 43 3YJ C8 H4 SING N N 44 3YJ C10 H5 SING N N 45 3YJ C13 H6 SING N N 46 3YJ C13 H7 SING N N 47 3YJ C15 H8 SING N N 48 3YJ C15 H9 SING N N 49 3YJ C17 H10 SING N N 50 3YJ C20 H11 SING N N 51 3YJ C20 H12 SING N N 52 3YJ C21 H13 SING N N 53 3YJ C21 H14 SING N N 54 3YJ C22 H15 SING N N 55 3YJ C22 H16 SING N N 56 3YJ C24 H17 SING N N 57 3YJ C24 H18 SING N N 58 3YJ C26 H19 SING N N 59 3YJ C26 H20 SING N N 60 3YJ C28 H21 SING N N 61 3YJ C28 H22 SING N N 62 3YJ C1 H23 SING N N 63 3YJ C11 H24 SING N N 64 3YJ C14 H25 SING N N 65 3YJ C14 H26 SING N N 66 3YJ C16 H27 SING N N 67 3YJ C16 H28 SING N N 68 3YJ C18 H29 SING N N 69 3YJ C18 H30 SING N N 70 3YJ C18 H31 SING N N 71 3YJ C19 H32 SING N N 72 3YJ C19 H33 SING N N 73 3YJ C2 H34 SING N N 74 3YJ C23 H35 SING N N 75 3YJ C23 H36 SING N N 76 3YJ C25 H37 SING N N 77 3YJ C25 H38 SING N N 78 3YJ C27 H39 SING N N 79 3YJ C27 H40 SING N N 80 3YJ C30 H41 SING N N 81 3YJ C30 H42 SING N N 82 3YJ C30 H43 SING N N 83 3YJ C31 H44 SING N N 84 3YJ C31 H45 SING N N 85 3YJ C32 H46 SING N N 86 3YJ C32 H47 SING N N 87 3YJ C33 H48 SING N N 88 3YJ C33 H49 SING N N 89 3YJ C33 H50 SING N N 90 3YJ C9 H51 SING N N 91 3YJ O1 H52 SING N N 92 3YJ O2 H53 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3YJ SMILES ACDLabs 12.01 "CCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(O)ccc2C2CCC3(C)C(CCC3O)C21" 3YJ InChI InChI 1.03 "InChI=1S/C33H53NO3/c1-4-21-34(3)31(37)14-12-10-8-6-5-7-9-11-13-24-22-25-23-26(35)15-16-27(25)28-19-20-33(2)29(32(24)28)17-18-30(33)36/h15-16,23-24,28-30,32,35-36H,4-14,17-22H2,1-3H3/t24-,28-,29+,30+,32-,33+/m1/s1" 3YJ InChIKey InChI 1.03 UUJHTDRJNXJHMK-XEXYCPDTSA-N 3YJ SMILES_CANONICAL CACTVS 3.385 "CCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(O)ccc2[C@H]3CC[C@]4(C)[C@@H](O)CC[C@H]4[C@H]13" 3YJ SMILES CACTVS 3.385 "CCCN(C)C(=O)CCCCCCCCCC[CH]1Cc2cc(O)ccc2[CH]3CC[C]4(C)[CH](O)CC[CH]4[CH]13" 3YJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3[C@@H]1[C@@H]4CC[C@@H]([C@]4(CC3)C)O)O" 3YJ SMILES "OpenEye OEToolkits" 2.0.7 "CCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(ccc2C3C1C4CCC(C4(CC3)C)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3YJ "SYSTEMATIC NAME" ACDLabs 12.01 "11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide" 3YJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-11-[(7~{R},8~{R},9~{S},13~{S},14~{S},17~{S})-13-methyl-3,17-bis(oxidanyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-7-yl]-~{N}-propyl-undecanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3YJ "Create component" 2021-07-07 RCSB 3YJ "Initial release" 2022-07-06 RCSB #