data_3Z0 # _chem_comp.id 3Z0 _chem_comp.name "[(3R)-3-aminopiperidin-1-yl][2-(1-ethyl-1H-pyrrolo[2,3-b]pyridin-2-yl)-7-methoxy-1-methyl-1H-benzimidazol-5-yl]methanone" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-12-10 _chem_comp.pdbx_modified_date 2015-01-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 432.518 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3Z0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4X8G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3Z0 C8 C1 C 0 1 Y N N 31.869 45.258 32.888 -7.771 0.658 0.689 C8 3Z0 1 3Z0 C7 C2 C 0 1 Y N N 30.648 44.668 32.681 -6.836 -0.302 1.024 C7 3Z0 2 3Z0 C5 C3 C 0 1 Y N N 28.983 44.064 30.787 -4.257 -0.807 0.874 C5 3Z0 3 3Z0 C15 C4 C 0 1 Y N N 27.137 42.514 25.414 1.644 -0.023 0.932 C15 3Z0 4 3Z0 C17 C5 C 0 1 Y N N 24.956 43.589 25.332 2.372 -2.094 -0.090 C17 3Z0 5 3Z0 C9 C6 C 0 1 Y N N 32.546 45.735 31.793 -7.360 1.813 0.040 C9 3Z0 6 3Z0 C6 C7 C 0 1 Y N N 30.154 44.578 31.398 -5.498 -0.060 0.694 C6 3Z0 7 3Z0 C16 C8 C 0 1 Y N N 25.914 42.745 24.827 2.666 -0.901 0.583 C16 3Z0 8 3Z0 C14 C9 C 0 1 Y N N 27.385 43.192 26.591 0.322 -0.336 0.609 C14 3Z0 9 3Z0 C21 C10 C 0 1 Y N N 26.433 44.044 27.110 0.037 -1.533 -0.072 C21 3Z0 10 3Z0 C18 C11 C 0 1 Y N N 25.222 44.253 26.502 1.069 -2.403 -0.422 C18 3Z0 11 3Z0 C4 C12 C 0 1 Y N N 29.099 44.292 29.434 -3.261 -0.047 0.348 C4 3Z0 12 3Z0 C11 C13 C 0 1 Y N N 30.945 45.102 30.399 -5.152 1.140 0.039 C11 3Z0 13 3Z0 C12 C14 C 0 1 Y N N 28.223 43.987 28.371 -1.836 -0.417 0.313 C12 3Z0 14 3Z0 C24 C15 C 0 1 N N N 25.618 42.049 23.583 4.065 -0.573 0.923 C24 3Z0 15 3Z0 C28 C16 C 0 1 N N N 24.342 44.915 21.878 4.288 2.318 -1.091 C28 3Z0 16 3Z0 C29 C17 C 0 1 N N N 24.140 44.365 20.489 5.714 2.781 -0.782 C29 3Z0 17 3Z0 C27 C18 C 0 1 N N N 25.522 44.232 22.520 3.663 1.723 0.175 C27 3Z0 18 3Z0 C32 C19 C 0 1 N N N 25.046 42.190 21.215 5.958 0.979 0.931 C32 3Z0 19 3Z0 C30 C20 C 0 1 N N R 23.873 42.883 20.567 6.558 1.582 -0.343 C30 3Z0 20 3Z0 C1 C21 C 0 1 N N N 32.113 44.661 27.663 -3.055 1.967 -2.333 C1 3Z0 21 3Z0 C23 C22 C 0 1 N N N 26.378 45.484 29.165 -2.102 -2.618 -0.908 C23 3Z0 22 3Z0 C20 C23 C 0 1 N N N 23.659 46.043 26.284 1.895 -4.414 -1.386 C20 3Z0 23 3Z0 C2 C24 C 0 1 N N N 30.787 45.330 27.922 -3.024 2.178 -0.818 C2 3Z0 24 3Z0 N10 N1 N 0 1 Y N N 32.136 45.687 30.524 -6.096 2.022 -0.262 N10 3Z0 25 3Z0 N13 N2 N 0 1 Y N N 28.502 43.165 27.386 -0.858 0.300 0.815 N13 3Z0 26 3Z0 N22 N3 N 0 1 Y N N 26.985 44.543 28.251 -1.332 -1.562 -0.247 N22 3Z0 27 3Z0 N3 N4 N 0 1 Y N N 30.291 44.920 29.216 -3.793 1.119 -0.161 N3 3Z0 28 3Z0 N26 N5 N 0 1 N N N 25.349 42.808 22.475 4.544 0.664 0.685 N26 3Z0 29 3Z0 N31 N6 N 0 1 N N N 23.814 42.395 19.170 7.934 2.022 -0.077 N31 3Z0 30 3Z0 O25 O1 O 0 1 N N N 25.624 40.827 23.556 4.784 -1.419 1.418 O25 3Z0 31 3Z0 O19 O2 O 0 1 N N N 24.354 45.126 27.113 0.791 -3.562 -1.076 O19 3Z0 32 3Z0 H1 H1 H 0 1 N N N 32.285 45.345 33.881 -8.814 0.509 0.927 H1 3Z0 33 3Z0 H2 H2 H 0 1 N N N 30.081 44.279 33.514 -7.129 -1.212 1.526 H2 3Z0 34 3Z0 H3 H3 H 0 1 N N N 28.156 43.584 31.288 -4.150 -1.775 1.342 H3 3Z0 35 3Z0 H4 H4 H 0 1 N N N 27.861 41.841 24.979 1.872 0.894 1.454 H4 3Z0 36 3Z0 H5 H5 H 0 1 N N N 24.015 43.727 24.820 3.171 -2.769 -0.361 H5 3Z0 37 3Z0 H6 H6 H 0 1 N N N 33.506 46.195 31.977 -8.095 2.559 -0.224 H6 3Z0 38 3Z0 H7 H7 H 0 1 N N N 24.531 45.997 21.820 3.694 3.168 -1.426 H7 3Z0 39 3Z0 H8 H8 H 0 1 N N N 23.440 44.732 22.480 4.314 1.560 -1.875 H8 3Z0 40 3Z0 H9 H9 H 0 1 N N N 25.045 44.543 19.889 6.153 3.227 -1.674 H9 3Z0 41 3Z0 H10 H10 H 0 1 N N N 23.283 44.867 20.017 5.690 3.520 0.019 H10 3Z0 42 3Z0 H11 H11 H 0 1 N N N 26.440 44.505 21.978 3.553 2.502 0.929 H11 3Z0 43 3Z0 H12 H12 H 0 1 N N N 25.605 44.556 23.568 2.685 1.304 -0.063 H12 3Z0 44 3Z0 H13 H13 H 0 1 N N N 24.798 41.131 21.379 6.496 0.067 1.192 H13 3Z0 45 3Z0 H14 H14 H 0 1 N N N 25.922 42.263 20.554 6.036 1.696 1.748 H14 3Z0 46 3Z0 H15 H15 H 0 1 N N N 22.939 42.675 21.109 6.562 0.832 -1.134 H15 3Z0 47 3Z0 H16 H16 H 0 1 N N N 32.494 44.970 26.679 -2.558 2.802 -2.827 H16 3Z0 48 3Z0 H17 H17 H 0 1 N N N 32.831 44.955 28.443 -2.539 1.039 -2.581 H17 3Z0 49 3Z0 H18 H18 H 0 1 N N N 31.982 43.569 27.679 -4.089 1.908 -2.671 H18 3Z0 50 3Z0 H19 H19 H 0 1 N N N 27.073 45.693 29.992 -2.468 -3.322 -0.161 H19 3Z0 51 3Z0 H20 H20 H 0 1 N N N 26.151 46.419 28.631 -2.947 -2.175 -1.436 H20 3Z0 52 3Z0 H21 H21 H 0 1 N N N 25.448 45.056 29.567 -1.463 -3.142 -1.619 H21 3Z0 53 3Z0 H22 H22 H 0 1 N N N 23.005 46.675 26.903 2.396 -4.710 -0.464 H22 3Z0 54 3Z0 H23 H23 H 0 1 N N N 24.383 46.677 25.751 1.535 -5.301 -1.906 H23 3Z0 55 3Z0 H24 H24 H 0 1 N N N 23.050 45.489 25.555 2.598 -3.879 -2.025 H24 3Z0 56 3Z0 H25 H25 H 0 1 N N N 30.917 46.422 27.907 -1.992 2.148 -0.468 H25 3Z0 57 3Z0 H26 H26 H 0 1 N N N 30.068 45.036 27.143 -3.461 3.148 -0.578 H26 3Z0 58 3Z0 H27 H27 H 0 1 N N N 23.638 41.411 19.167 8.511 1.248 0.215 H27 3Z0 59 3Z0 H28 H28 H 0 1 N N N 23.079 42.866 18.683 8.328 2.484 -0.883 H28 3Z0 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3Z0 N31 C30 SING N N 1 3Z0 C29 C30 SING N N 2 3Z0 C29 C28 SING N N 3 3Z0 C30 C32 SING N N 4 3Z0 C32 N26 SING N N 5 3Z0 C28 C27 SING N N 6 3Z0 N26 C27 SING N N 7 3Z0 N26 C24 SING N N 8 3Z0 O25 C24 DOUB N N 9 3Z0 C24 C16 SING N N 10 3Z0 C16 C17 DOUB Y N 11 3Z0 C16 C15 SING Y N 12 3Z0 C17 C18 SING Y N 13 3Z0 C15 C14 DOUB Y N 14 3Z0 C20 O19 SING N N 15 3Z0 C18 C21 DOUB Y N 16 3Z0 C18 O19 SING N N 17 3Z0 C14 C21 SING Y N 18 3Z0 C14 N13 SING Y N 19 3Z0 C21 N22 SING Y N 20 3Z0 N13 C12 DOUB Y N 21 3Z0 C1 C2 SING N N 22 3Z0 C2 N3 SING N N 23 3Z0 N22 C12 SING Y N 24 3Z0 N22 C23 SING N N 25 3Z0 C12 C4 SING N N 26 3Z0 N3 C4 SING Y N 27 3Z0 N3 C11 SING Y N 28 3Z0 C4 C5 DOUB Y N 29 3Z0 C11 N10 DOUB Y N 30 3Z0 C11 C6 SING Y N 31 3Z0 N10 C9 SING Y N 32 3Z0 C5 C6 SING Y N 33 3Z0 C6 C7 DOUB Y N 34 3Z0 C9 C8 DOUB Y N 35 3Z0 C7 C8 SING Y N 36 3Z0 C8 H1 SING N N 37 3Z0 C7 H2 SING N N 38 3Z0 C5 H3 SING N N 39 3Z0 C15 H4 SING N N 40 3Z0 C17 H5 SING N N 41 3Z0 C9 H6 SING N N 42 3Z0 C28 H7 SING N N 43 3Z0 C28 H8 SING N N 44 3Z0 C29 H9 SING N N 45 3Z0 C29 H10 SING N N 46 3Z0 C27 H11 SING N N 47 3Z0 C27 H12 SING N N 48 3Z0 C32 H13 SING N N 49 3Z0 C32 H14 SING N N 50 3Z0 C30 H15 SING N N 51 3Z0 C1 H16 SING N N 52 3Z0 C1 H17 SING N N 53 3Z0 C1 H18 SING N N 54 3Z0 C23 H19 SING N N 55 3Z0 C23 H20 SING N N 56 3Z0 C23 H21 SING N N 57 3Z0 C20 H22 SING N N 58 3Z0 C20 H23 SING N N 59 3Z0 C20 H24 SING N N 60 3Z0 C2 H25 SING N N 61 3Z0 C2 H26 SING N N 62 3Z0 N31 H27 SING N N 63 3Z0 N31 H28 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3Z0 SMILES ACDLabs 12.01 "O=C(c4cc3nc(c2cc1cccnc1n2CC)n(c3c(OC)c4)C)N5CCCC(N)C5" 3Z0 InChI InChI 1.03 "InChI=1S/C24H28N6O2/c1-4-30-19(12-15-7-5-9-26-22(15)30)23-27-18-11-16(13-20(32-3)21(18)28(23)2)24(31)29-10-6-8-17(25)14-29/h5,7,9,11-13,17H,4,6,8,10,14,25H2,1-3H3/t17-/m1/s1" 3Z0 InChIKey InChI 1.03 JCCVZBCVMBEDEN-QGZVFWFLSA-N 3Z0 SMILES_CANONICAL CACTVS 3.385 "CCn1c(cc2cccnc12)c3nc4cc(cc(OC)c4n3C)C(=O)N5CCC[C@@H](N)C5" 3Z0 SMILES CACTVS 3.385 "CCn1c(cc2cccnc12)c3nc4cc(cc(OC)c4n3C)C(=O)N5CCC[CH](N)C5" 3Z0 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCn1c(cc2c1nccc2)c3nc4cc(cc(c4n3C)OC)C(=O)N5CCC[C@H](C5)N" 3Z0 SMILES "OpenEye OEToolkits" 1.9.2 "CCn1c(cc2c1nccc2)c3nc4cc(cc(c4n3C)OC)C(=O)N5CCCC(C5)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3Z0 "SYSTEMATIC NAME" ACDLabs 12.01 "[(3R)-3-aminopiperidin-1-yl][2-(1-ethyl-1H-pyrrolo[2,3-b]pyridin-2-yl)-7-methoxy-1-methyl-1H-benzimidazol-5-yl]methanone" 3Z0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(3R)-3-azanylpiperidin-1-yl]-[2-(1-ethylpyrrolo[2,3-b]pyridin-2-yl)-7-methoxy-1-methyl-benzimidazol-5-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3Z0 "Create component" 2014-12-10 RCSB 3Z0 "Initial release" 2015-01-28 RCSB #