data_412
#
_chem_comp.id 412
_chem_comp.name "(R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENETHYL)GUANIDINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H18 B N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-06-02
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 263.101
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 412
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZML
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
412 C01 C01 C 0 1 Y N N N N N 8.898 72.039 81.736 1.509 0.610 -0.832 C01 412 1
412 C02 C02 C 0 1 Y N N N N N 7.772 72.542 82.488 0.725 -0.441 -1.274 C02 412 2
412 C03 C03 C 0 1 Y N N N N N 7.798 72.564 83.938 -0.625 -0.464 -0.991 C03 412 3
412 C04 C04 C 0 1 Y N N N N N 8.952 72.089 84.665 -1.201 0.579 -0.269 C04 412 4
412 C05 C05 C 0 1 Y N N N N N 10.062 71.591 83.899 -0.408 1.639 0.169 C05 412 5
412 C06 C06 C 0 1 Y N N N N N 10.035 71.569 82.462 0.942 1.649 -0.115 C06 412 6
412 C07 C07 C 0 1 N N N N N N 8.874 72.028 80.212 2.984 0.627 -1.140 C07 412 7
412 C08 C08 C 0 1 N N N N N N 9.636 73.178 79.562 3.748 -0.072 -0.013 C08 412 8
412 B B B 0 1 N N N N N N 9.030 72.107 86.212 -2.738 0.562 0.052 B 412 9
412 O10 O10 O 0 1 N N N N N N 8.032 72.913 86.868 -3.655 -0.459 -0.344 O10 412 10
412 C11 C11 C 0 1 N N R N N N 7.357 72.090 87.765 -4.732 -0.384 0.624 C11 412 11
412 C12 C12 C 0 1 N N N N N N 8.265 70.901 87.971 -4.819 1.144 0.868 C12 412 12
412 O13 O13 O 0 1 N N N N N N 8.963 70.788 86.746 -3.442 1.564 0.778 O13 412 13
412 C14 C14 C 0 1 N N N N N N 7.036 72.790 89.090 -6.038 -0.919 0.032 C14 412 14
412 O15 O15 O 0 1 N N N N N N 6.206 73.904 88.857 -5.965 -2.343 -0.071 O15 412 15
412 N16 N16 N 0 1 N N N N N N 11.072 73.032 79.826 5.182 -0.056 -0.312 N16 412 16
412 C17 C17 C 0 1 N N N N N N 11.930 72.243 79.011 6.073 -0.630 0.564 C17 412 17
412 N18 N18 N 0 1 N N N N N N 13.182 72.146 79.278 5.642 -1.190 1.659 N18 412 18
412 N19 N19 N 0 1 N N N N N N 11.416 71.553 77.895 7.419 -0.615 0.284 N19 412 19
412 H02 H02 H 0 1 N N N N N N 6.900 72.906 81.964 1.173 -1.249 -1.834 H02 412 20
412 H03 H03 H 0 1 N N N N N N 6.944 72.940 84.481 -1.235 -1.287 -1.332 H03 412 21
412 H05 H05 H 0 1 N N N N N N 10.937 71.225 84.416 -0.849 2.450 0.729 H05 412 22
412 H06 H06 H 0 1 N N N N N N 10.890 71.190 81.921 1.558 2.469 0.223 H06 412 23
412 H071 1H07 H 0 0 N N N N N N 7.821 72.135 79.911 3.326 1.659 -1.224 H071 412 24
412 H072 2H07 H 0 0 N N N N N N 9.331 71.086 79.874 3.166 0.106 -2.080 H072 412 25
412 H081 1H08 H 0 0 N N N N N N 9.284 74.132 79.982 3.406 -1.104 0.071 H081 412 26
412 H082 2H08 H 0 0 N N N N N N 9.461 73.164 78.476 3.566 0.449 0.927 H082 412 27
412 H11 H11 H 0 1 N N N N N N 6.375 71.798 87.365 -4.476 -0.912 1.542 H11 412 28
412 H121 1H12 H 0 0 N N N N N N 7.710 69.986 88.226 -5.222 1.354 1.859 H121 412 29
412 H122 2H12 H 0 0 N N N N N N 8.955 71.065 88.812 -5.420 1.625 0.097 H122 412 30
412 H141 1H14 H 0 0 N N N N N N 7.973 73.128 89.556 -6.870 -0.644 0.680 H141 412 31
412 H142 2H14 H 0 0 N N N N N N 6.519 72.085 89.758 -6.191 -0.490 -0.958 H142 412 32
412 H15 H15 H 0 1 N N N N N N 6.019 74.338 89.681 -6.805 -2.639 -0.447 H15 412 33
412 H16 H16 H 0 1 N N N N N N 11.464 73.508 80.613 5.503 0.360 -1.127 H16 412 34
412 H18 H18 H 0 1 N N N N N N 13.633 71.556 78.608 4.692 -1.201 1.857 H18 412 35
412 H191 1H19 H 0 0 N N N N N N 11.956 70.981 77.278 8.047 -1.020 0.901 H191 412 36
412 H192 2H19 H 0 0 N N N N N N 10.434 71.718 77.809 7.739 -0.202 -0.534 H192 412 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
412 C01 C02 SING Y N 1
412 C01 C06 DOUB Y N 2
412 C01 C07 SING N N 3
412 C02 C03 DOUB Y N 4
412 C02 H02 SING N N 5
412 C03 C04 SING Y N 6
412 C03 H03 SING N N 7
412 C04 C05 DOUB Y N 8
412 C04 B SING N N 9
412 C05 C06 SING Y N 10
412 C05 H05 SING N N 11
412 C06 H06 SING N N 12
412 C07 C08 SING N N 13
412 C07 H071 SING N N 14
412 C07 H072 SING N N 15
412 C08 N16 SING N N 16
412 C08 H081 SING N N 17
412 C08 H082 SING N N 18
412 B O10 SING N N 19
412 B O13 SING N N 20
412 O10 C11 SING N N 21
412 C11 C12 SING N N 22
412 C11 C14 SING N N 23
412 C11 H11 SING N N 24
412 C12 O13 SING N N 25
412 C12 H121 SING N N 26
412 C12 H122 SING N N 27
412 C14 O15 SING N N 28
412 C14 H141 SING N N 29
412 C14 H142 SING N N 30
412 O15 H15 SING N N 31
412 N16 C17 SING N N 32
412 N16 H16 SING N N 33
412 C17 N18 DOUB N N 34
412 C17 N19 SING N N 35
412 N18 H18 SING N N 36
412 N19 H191 SING N N 37
412 N19 H192 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
412 SMILES ACDLabs 10.04 "OCC1OB(OC1)c2ccc(cc2)CCNC(=[N@H])N"
412 SMILES_CANONICAL CACTVS 3.341 "NC(=N)NCCc1ccc(cc1)B2OC[C@@H](CO)O2"
412 SMILES CACTVS 3.341 "NC(=N)NCCc1ccc(cc1)B2OC[CH](CO)O2"
412 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\N)/NCCc1ccc(cc1)B2OC[C@H](O2)CO"
412 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(N)NCCc1ccc(cc1)B2OCC(O2)CO"
412 InChI InChI 1.03 "InChI=1S/C12H18BN3O3/c14-12(15)16-6-5-9-1-3-10(4-2-9)13-18-8-11(7-17)19-13/h1-4,11,17H,5-8H2,(H4,14,15,16)/t11-/m1/s1"
412 InChIKey InChI 1.03 ZYCNKSJMJFKCBX-LLVKDONJSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
412 "SYSTEMATIC NAME" ACDLabs 10.04 "1-(2-{4-[(4R)-4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl]phenyl}ethyl)guanidine"
412 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[2-[4-[(4R)-4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl]phenyl]ethyl]guanidine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
412 "Create component" 2005-06-02 RCSB
412 "Modify descriptor" 2011-06-04 RCSB
412 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 412
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom B
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#