data_413
#
_chem_comp.id 413
_chem_comp.name "(S)-[(R)-2-(4-BENZYLOXY-3-METHOXY-PHENYL)-2-(4-CARBAMIMIDOYL-PHENYLAMINO)-ACETYLAMINO]-PHENYL-ACETIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H30 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-09-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 538.594
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 413
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1W7X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
413 O31 O31 O 0 1 N N N 9.651 39.613 34.601 2.213 -0.641 1.617 O31 413 1
413 C31 C31 C 0 1 N N N 9.190 40.034 33.544 1.586 -0.663 0.579 C31 413 2
413 N4 N4 N 0 1 N N N 7.925 40.453 33.455 1.164 -1.838 0.071 N4 413 3
413 C23 C23 C 0 1 N N S 7.061 40.480 34.621 1.463 -3.088 0.773 C23 413 4
413 C24 C24 C 0 1 Y N N 7.588 41.532 35.540 0.435 -4.128 0.406 C24 413 5
413 C25 C25 C 0 1 Y N N 8.214 42.678 35.024 -0.056 -4.985 1.373 C25 413 6
413 C26 C26 C 0 1 Y N N 8.723 43.665 35.870 -0.999 -5.939 1.036 C26 413 7
413 C27 C27 C 0 1 Y N N 8.587 43.510 37.249 -1.450 -6.035 -0.267 C27 413 8
413 C28 C28 C 0 1 Y N N 7.975 42.368 37.778 -0.959 -5.177 -1.234 C28 413 9
413 C29 C29 C 0 1 Y N N 7.477 41.376 36.921 -0.020 -4.220 -0.896 C29 413 10
413 C30 C30 C 0 1 N N N 5.673 40.908 34.260 2.833 -3.573 0.375 C30 413 11
413 O30 O30 O 0 1 N N N 5.466 41.304 33.092 3.320 -4.710 0.897 O30 413 12
413 O40 O40 O 0 1 N N N 4.795 40.851 35.153 3.492 -2.939 -0.415 O40 413 13
413 C8 C8 C 0 1 N N R 10.010 40.125 32.289 1.279 0.624 -0.144 C8 413 14
413 N3 N3 N 0 1 N N N 11.201 39.287 32.388 1.842 1.751 0.605 N3 413 15
413 C5 C5 C 0 1 Y N N 11.927 38.826 31.331 3.172 2.118 0.416 C5 413 16
413 C4 C4 C 0 1 Y N N 11.521 39.027 30.009 3.705 3.188 1.128 C4 413 17
413 C3 C3 C 0 1 Y N N 12.288 38.550 28.961 5.019 3.553 0.943 C3 413 18
413 C6 C6 C 0 1 Y N N 13.144 38.166 31.570 3.967 1.410 -0.480 C6 413 19
413 C7 C7 C 0 1 Y N N 13.933 37.684 30.524 5.281 1.774 -0.673 C7 413 20
413 C2 C2 C 0 1 Y N N 13.502 37.890 29.206 5.818 2.848 0.040 C2 413 21
413 C1 C1 C 0 1 N N N 14.290 37.400 28.032 7.230 3.238 -0.161 C1 413 22
413 N2 N2 N 0 1 N N N 15.468 36.780 28.185 8.017 2.541 -1.052 N2 413 23
413 N1 N1 N 0 1 N N N 13.773 37.604 26.810 7.730 4.241 0.505 N1 413 24
413 C9 C9 C 0 1 Y N N 10.353 41.562 32.072 -0.214 0.792 -0.258 C9 413 25
413 C14 C14 C 0 1 Y N N 11.240 42.245 32.910 -0.855 0.474 -1.440 C14 413 26
413 C13 C13 C 0 1 Y N N 11.528 43.590 32.707 -2.228 0.628 -1.547 C13 413 27
413 O3 O3 O 0 1 N N N 12.417 44.259 33.519 -2.861 0.315 -2.710 O3 413 28
413 C15 C15 C 0 1 N N N 12.906 43.662 34.729 -1.855 -0.137 -3.618 C15 413 29
413 C12 C12 C 0 1 Y N N 10.935 44.274 31.640 -2.958 1.107 -0.463 C12 413 30
413 C11 C11 C 0 1 Y N N 10.045 43.598 30.800 -2.309 1.419 0.721 C11 413 31
413 C10 C10 C 0 1 Y N N 9.747 42.255 31.006 -0.939 1.263 0.821 C10 413 32
413 O4 O4 O 0 1 N N N 11.246 45.607 31.443 -4.305 1.260 -0.563 O4 413 33
413 C16 C16 C 0 1 N N N 10.442 46.491 30.659 -4.760 1.750 0.700 C16 413 34
413 C17 C17 C 0 1 Y N N 10.715 46.324 29.178 -6.254 1.942 0.656 C17 413 35
413 C22 C22 C 0 1 Y N N 11.771 45.542 28.707 -7.095 0.905 1.017 C22 413 36
413 C21 C21 C 0 1 Y N N 11.992 45.398 27.337 -8.465 1.081 0.976 C21 413 37
413 C20 C20 C 0 1 Y N N 11.168 46.045 26.416 -8.995 2.293 0.576 C20 413 38
413 C19 C19 C 0 1 Y N N 10.112 46.829 26.880 -8.155 3.330 0.216 C19 413 39
413 C18 C18 C 0 1 Y N N 9.888 46.978 28.251 -6.784 3.156 0.261 C18 413 40
413 H4 H4 H 0 1 N N N 7.560 40.759 32.553 0.663 -1.855 -0.759 H4 413 41
413 H23 H23 H 0 1 N N N 7.048 39.486 35.126 1.437 -2.916 1.849 H23 413 42
413 H25 H25 H 0 1 N N N 8.305 42.800 33.932 0.296 -4.910 2.391 H25 413 43
413 H26 H26 H 0 1 N N N 9.225 44.554 35.454 -1.382 -6.609 1.791 H26 413 44
413 H27 H27 H 0 1 N N N 8.965 44.293 37.928 -2.185 -6.780 -0.530 H27 413 45
413 H28 H28 H 0 1 N N N 7.884 42.248 38.871 -1.311 -5.252 -2.252 H28 413 46
413 H29 H29 H 0 1 N N N 6.998 40.474 37.339 0.364 -3.550 -1.651 H29 413 47
413 H40 H40 H 0 1 N N N 3.914 41.123 34.924 ? ? ? H40 413 48
413 H8 H8 H 0 1 N N N 9.393 39.770 31.431 1.719 0.595 -1.141 H8 413 49
413 H3 H3 H 0 1 N N N 11.515 39.026 33.323 1.288 2.241 1.232 H3 413 50
413 HA HA H 0 1 N N N 10.583 39.569 29.800 3.086 3.733 1.826 HA 413 51
413 HB HB H 0 1 N N N 11.942 38.690 27.923 5.433 4.384 1.495 HB 413 52
413 H6 H6 H 0 1 N N N 13.484 38.025 32.610 3.551 0.580 -1.031 H6 413 53
413 H7 H7 H 0 1 N N N 14.877 37.152 30.730 5.896 1.228 -1.372 H7 413 54
413 HN2 HN2 H 0 1 N N N 15.508 35.767 28.069 8.944 2.797 -1.184 HN2 413 55
413 H1N1 1H1N H 0 0 N N N 14.310 37.270 26.010 ? ? ? H1N1 413 56
413 H1N2 2H1N H 0 0 N N N 12.876 38.076 26.694 8.657 4.497 0.373 H1N2 413 57
413 H14 H14 H 0 1 N N N 11.719 41.708 33.746 -0.286 0.106 -2.281 H14 413 58
413 H151 1H15 H 0 0 N N N 13.626 44.204 35.386 -1.356 -1.012 -3.202 H151 413 59
413 H152 2H15 H 0 0 N N N 13.349 42.672 34.472 -2.317 -0.400 -4.570 H152 413 60
413 H153 3H15 H 0 0 N N N 12.028 43.365 35.348 -1.125 0.657 -3.776 H153 413 61
413 H11 H11 H 0 1 N N N 9.572 44.137 29.962 -2.874 1.787 1.565 H11 413 62
413 H10 H10 H 0 1 N N N 9.040 41.735 30.338 -0.435 1.510 1.743 H10 413 63
413 H161 1H16 H 0 0 N N N 10.569 47.551 30.980 -4.509 1.032 1.480 H161 413 64
413 H162 2H16 H 0 0 N N N 9.358 46.369 30.890 -4.278 2.704 0.915 H162 413 65
413 H22 H22 H 0 1 N N N 12.437 45.033 29.424 -6.681 -0.042 1.329 H22 413 66
413 H21 H21 H 0 1 N N N 12.824 44.768 26.980 -9.122 0.271 1.257 H21 413 67
413 H20 H20 H 0 1 N N N 11.349 45.938 25.333 -10.066 2.430 0.544 H20 413 68
413 H19 H19 H 0 1 N N N 9.448 47.335 26.159 -8.569 4.277 -0.097 H19 413 69
413 H18 H18 H 0 1 N N N 9.058 47.612 28.606 -6.127 3.966 -0.020 H18 413 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
413 O31 C31 DOUB N N 1
413 C31 N4 SING N N 2
413 C31 C8 SING N N 3
413 N4 C23 SING N N 4
413 N4 H4 SING N N 5
413 C23 C24 SING N N 6
413 C23 C30 SING N N 7
413 C23 H23 SING N N 8
413 C24 C25 DOUB Y N 9
413 C24 C29 SING Y N 10
413 C25 C26 SING Y N 11
413 C25 H25 SING N N 12
413 C26 C27 DOUB Y N 13
413 C26 H26 SING N N 14
413 C27 C28 SING Y N 15
413 C27 H27 SING N N 16
413 C28 C29 DOUB Y N 17
413 C28 H28 SING N N 18
413 C29 H29 SING N N 19
413 C30 O30 DOUB N N 20
413 C30 O40 SING N N 21
413 O40 H40 SING N N 22
413 C8 N3 SING N N 23
413 C8 C9 SING N N 24
413 C8 H8 SING N N 25
413 N3 C5 SING N N 26
413 N3 H3 SING N N 27
413 C5 C4 DOUB Y N 28
413 C5 C6 SING Y N 29
413 C4 C3 SING Y N 30
413 C4 HA SING N N 31
413 C3 C2 DOUB Y N 32
413 C3 HB SING N N 33
413 C6 C7 DOUB Y N 34
413 C6 H6 SING N N 35
413 C7 C2 SING Y N 36
413 C7 H7 SING N N 37
413 C2 C1 SING N N 38
413 C1 N2 DOUB N N 39
413 C1 N1 SING N N 40
413 N2 HN2 SING N N 41
413 N1 H1N1 SING N N 42
413 N1 H1N2 SING N N 43
413 C9 C14 DOUB Y N 44
413 C9 C10 SING Y N 45
413 C14 C13 SING Y N 46
413 C14 H14 SING N N 47
413 C13 O3 SING N N 48
413 C13 C12 DOUB Y N 49
413 O3 C15 SING N N 50
413 C15 H151 SING N N 51
413 C15 H152 SING N N 52
413 C15 H153 SING N N 53
413 C12 C11 SING Y N 54
413 C12 O4 SING N N 55
413 C11 C10 DOUB Y N 56
413 C11 H11 SING N N 57
413 C10 H10 SING N N 58
413 O4 C16 SING N N 59
413 C16 C17 SING N N 60
413 C16 H161 SING N N 61
413 C16 H162 SING N N 62
413 C17 C22 DOUB Y N 63
413 C17 C18 SING Y N 64
413 C22 C21 SING Y N 65
413 C22 H22 SING N N 66
413 C21 C20 DOUB Y N 67
413 C21 H21 SING N N 68
413 C20 C19 SING Y N 69
413 C20 H20 SING N N 70
413 C19 C18 DOUB Y N 71
413 C19 H19 SING N N 72
413 C18 H18 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
413 SMILES ACDLabs 10.04 "O=C(O)C(c1ccccc1)NC(=O)C(c3cc(OC)c(OCc2ccccc2)cc3)Nc4ccc(C(=[N@H])N)cc4"
413 SMILES_CANONICAL CACTVS 3.341 "COc1cc(ccc1OCc2ccccc2)[C@@H](Nc3ccc(cc3)C(N)=N)C(=O)N[C@H](C(O)=O)c4ccccc4"
413 SMILES CACTVS 3.341 "COc1cc(ccc1OCc2ccccc2)[CH](Nc3ccc(cc3)C(N)=N)C(=O)N[CH](C(O)=O)c4ccccc4"
413 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1cc(ccc1OCc2ccccc2)[C@H](C(=O)N[C@@H](c3ccccc3)C(=O)O)Nc4ccc(cc4)C(=N)N"
413 SMILES "OpenEye OEToolkits" 1.5.0 "COc1cc(ccc1OCc2ccccc2)C(C(=O)NC(c3ccccc3)C(=O)O)Nc4ccc(cc4)C(=N)N"
413 InChI InChI 1.03
"InChI=1S/C31H30N4O5/c1-39-26-18-23(14-17-25(26)40-19-20-8-4-2-5-9-20)27(34-24-15-12-22(13-16-24)29(32)33)30(36)35-28(31(37)38)21-10-6-3-7-11-21/h2-18,27-28,34H,19H2,1H3,(H3,32,33)(H,35,36)(H,37,38)/t27-,28+/m1/s1"
413 InChIKey InChI 1.03 WGEGXJPYFSZDMU-IZLXSDGUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
413 "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-({(2R)-2-[4-(benzyloxy)-3-methoxyphenyl]-2-[(4-carbamimidoylphenyl)amino]acetyl}amino)(phenyl)ethanoic acid"
413 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(2R)-2-[(4-carbamimidoylphenyl)amino]-2-(3-methoxy-4-phenylmethoxy-phenyl)ethanoyl]amino]-2-phenyl-ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
413 "Create component" 2004-09-14 EBI
413 "Modify descriptor" 2011-06-04 RCSB
#