data_42E # _chem_comp.id 42E _chem_comp.name "[(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H12 N3 O6 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 3TC-MP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-01-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.236 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 42E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4S07 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 42E PA PA P 0 1 N N N 9.008 -21.479 13.463 3.118 -0.976 -0.094 PA 42E 1 42E O1A O1A O 0 1 N N N 10.331 -21.863 12.835 3.671 -1.284 1.244 O1A 42E 2 42E O2A O2A O 0 1 N N N 7.776 -22.293 13.123 2.497 -2.314 -0.739 O2A 42E 3 42E "O5'" "O5'" O 0 1 N N N 9.226 -21.451 15.076 1.964 0.138 0.046 "O5'" 42E 4 42E "C5'" "C5'" C 0 1 N N N 10.468 -20.989 15.586 2.174 1.401 0.679 "C5'" 42E 5 42E "C4'" "C4'" C 0 1 N N R 10.397 -19.869 16.621 0.879 2.214 0.639 "C4'" 42E 6 42E "O4'" "O4'" O 0 1 N N N 9.373 -20.123 17.614 -0.180 1.521 1.325 "O4'" 42E 7 42E "S3'" "S3'" S 0 1 N N N 10.140 -18.295 15.809 0.234 2.331 -1.082 "S3'" 42E 8 42E "C2'" "C2'" C 0 1 N N N 9.473 -17.693 17.340 -1.520 2.470 -0.533 "C2'" 42E 9 42E "C1'" "C1'" C 0 1 N N S 8.821 -18.868 18.056 -1.479 1.634 0.769 "C1'" 42E 10 42E N1 N1 N 0 1 N N N 7.404 -18.810 17.694 -1.985 0.290 0.480 N1 42E 11 42E C2 C2 C 0 1 N N N 6.621 -17.837 18.205 -3.197 0.138 -0.085 C2 42E 12 42E O2 O2 O 0 1 N N N 7.155 -16.925 19.041 -3.863 1.125 -0.350 O2 42E 13 42E N3 N3 N 0 1 N N N 5.305 -17.719 17.886 -3.681 -1.072 -0.358 N3 42E 14 42E C4 C4 C 0 1 N N N 4.751 -18.640 17.070 -2.978 -2.162 -0.080 C4 42E 15 42E N4 N4 N 0 1 N N N 3.468 -18.549 16.764 -3.488 -3.407 -0.367 N4 42E 16 42E C5 C5 C 0 1 N N N 5.467 -19.669 16.505 -1.704 -2.037 0.513 C5 42E 17 42E C6 C6 C 0 1 N N N 6.890 -19.830 16.764 -1.224 -0.799 0.779 C6 42E 18 42E H2 H2 H 0 1 N N N 8.011 -22.987 12.518 3.137 -3.030 -0.853 H2 42E 19 42E H3 H3 H 0 1 N N N 10.979 -21.845 16.052 2.472 1.242 1.716 H3 42E 20 42E H4 H4 H 0 1 N N N 11.065 -20.624 14.737 2.961 1.944 0.155 H4 42E 21 42E H5 H5 H 0 1 N N N 11.376 -19.791 17.116 1.033 3.205 1.066 H5 42E 22 42E H6 H6 H 0 1 N N N 10.279 -17.276 17.962 -1.787 3.507 -0.327 H6 42E 23 42E H7 H7 H 0 1 N N N 8.723 -16.913 17.141 -2.198 2.029 -1.263 H7 42E 24 42E H8 H8 H 0 1 N N N 8.944 -18.750 19.143 -2.135 2.100 1.504 H8 42E 25 42E H9 H9 H 0 1 N N N 2.917 -17.802 17.136 -4.364 -3.489 -0.775 H9 42E 26 42E H10 H10 H 0 1 N N N 3.049 -19.227 16.160 -2.971 -4.201 -0.162 H10 42E 27 42E H11 H11 H 0 1 N N N 4.964 -20.371 15.857 -1.118 -2.914 0.742 H11 42E 28 42E H12 H12 H 0 1 N N N 7.498 -20.607 16.325 -0.251 -0.678 1.232 H12 42E 29 42E OP3 OP3 O 0 1 N Y N ? ? ? 4.292 -0.417 -1.044 OP3 42E 30 42E H1 H1 H 0 1 N Y N ? ? ? 4.001 -0.194 -1.938 H1 42E 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 42E O1A PA DOUB N N 1 42E O2A PA SING N N 2 42E PA "O5'" SING N N 3 42E "O5'" "C5'" SING N N 4 42E "C5'" "C4'" SING N N 5 42E "S3'" "C4'" SING N N 6 42E "S3'" "C2'" SING N N 7 42E C5 C6 DOUB N N 8 42E C5 C4 SING N N 9 42E "C4'" "O4'" SING N N 10 42E C6 N1 SING N N 11 42E N4 C4 SING N N 12 42E C4 N3 DOUB N N 13 42E "C2'" "C1'" SING N N 14 42E "O4'" "C1'" SING N N 15 42E N1 "C1'" SING N N 16 42E N1 C2 SING N N 17 42E N3 C2 SING N N 18 42E C2 O2 DOUB N N 19 42E O2A H2 SING N N 20 42E "C5'" H3 SING N N 21 42E "C5'" H4 SING N N 22 42E "C4'" H5 SING N N 23 42E "C2'" H6 SING N N 24 42E "C2'" H7 SING N N 25 42E "C1'" H8 SING N N 26 42E N4 H9 SING N N 27 42E N4 H10 SING N N 28 42E C5 H11 SING N N 29 42E C6 H12 SING N N 30 42E PA OP3 SING N N 31 42E OP3 H1 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 42E SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CS2" 42E InChI InChI 1.03 "InChI=1S/C8H12N3O6PS/c9-5-1-2-11(8(12)10-5)6-4-19-7(17-6)3-16-18(13,14)15/h1-2,6-7H,3-4H2,(H2,9,10,12)(H2,13,14,15)/t6-,7+/m0/s1" 42E InChIKey InChI 1.03 WUMZLKDCOINBEA-NKWVEPMBSA-N 42E SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(O)=O)O2" 42E SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(O)=O)O2" 42E SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](O[C@H](S1)COP(=O)(O)O)N2C=CC(=NC2=O)N" 42E SMILES "OpenEye OEToolkits" 1.7.6 "C1C(OC(S1)COP(=O)(O)O)N2C=CC(=NC2=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 42E "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate" 42E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 42E "Create component" 2015-01-29 RCSB 42E "Initial release" 2017-01-11 RCSB 42E "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 42E _pdbx_chem_comp_synonyms.name 3TC-MP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##