data_486 # _chem_comp.id 486 _chem_comp.name "11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H35 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "RU-486; MIFEPRISTONE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-12-27 _chem_comp.pdbx_modified_date 2020-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 486 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1NHZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 486 O30 O30 O 0 1 N N N -4.583 18.217 3.520 5.592 -3.115 -1.025 O30 486 1 486 C2 C2 C 0 1 N N N -3.993 17.199 3.713 4.641 -2.406 -0.766 C2 486 2 486 C1 C1 C 0 1 N N N -4.701 15.838 4.087 3.839 -1.804 -1.888 C1 486 3 486 C3 C3 C 0 1 N N N -2.502 17.082 3.534 4.308 -2.161 0.577 C3 486 4 486 C4 C4 C 0 1 N N N -1.997 15.856 3.229 3.163 -1.518 0.896 C4 486 5 486 C7 C7 C 0 1 N N N -0.439 15.746 3.105 2.832 -1.156 2.323 C7 486 6 486 C5 C5 C 0 1 N N N -2.936 14.701 3.175 2.203 -1.160 -0.148 C5 486 7 486 C6 C6 C 0 1 N N N -4.475 15.066 2.840 2.354 -1.784 -1.515 C6 486 8 486 C10 C10 C 0 1 N N N -2.412 13.438 3.488 1.217 -0.311 0.100 C10 486 9 486 C14 C14 C 0 1 N N S -3.239 12.007 3.531 0.222 -0.053 -1.014 C14 486 10 486 C18 C18 C 0 1 Y N N -3.191 11.406 2.071 -1.036 -0.838 -0.747 C18 486 11 486 C22 C22 C 0 1 Y N N -2.334 12.025 1.058 -2.190 -0.553 -1.454 C22 486 12 486 C23 C23 C 0 1 Y N N -2.173 11.511 -0.211 -3.345 -1.270 -1.212 C23 486 13 486 C24 C24 C 0 1 Y N N -2.835 10.288 -0.595 -3.346 -2.280 -0.258 C24 486 14 486 N27 N27 N 0 1 N N N -2.779 9.715 -1.926 -4.513 -3.007 -0.010 N27 486 15 486 C29 C29 C 0 1 N N N -3.542 8.490 -2.177 -5.698 -2.798 -0.846 C29 486 16 486 C28 C28 C 0 1 N N N -2.371 10.510 -3.114 -4.551 -3.979 1.085 C28 486 17 486 C25 C25 C 0 1 Y N N -3.712 9.657 0.418 -2.185 -2.563 0.451 C25 486 18 486 C26 C26 C 0 1 Y N N -3.862 10.189 1.721 -1.033 -1.846 0.200 C26 486 19 486 C13 C13 C 0 1 N N N -2.646 11.054 4.596 -0.124 1.442 -1.101 C13 486 20 486 C12 C12 C 0 1 N N S -1.136 11.038 5.007 -0.547 1.893 0.261 C12 486 21 486 C19 C19 C 0 1 N N N -0.417 10.110 3.858 -1.641 0.969 0.799 C19 486 22 486 C17 C17 C 0 1 N N R -0.853 10.348 6.380 -0.993 3.348 0.383 C17 486 23 486 C31 C31 C 0 1 N N N -1.587 10.882 7.598 -0.348 4.168 -0.656 C31 486 24 486 C30 C30 C 0 1 N N N -2.485 11.042 8.391 0.167 4.821 -1.484 C30 486 25 486 C32 C32 C 0 1 N N N -3.164 11.448 9.656 0.813 5.641 -2.523 C32 486 26 486 O3 O3 O 0 1 N N N -0.920 8.898 6.308 -2.415 3.441 0.272 O3 486 27 486 C16 C16 C 0 1 N N N 0.623 10.861 6.467 -0.534 3.806 1.788 C16 486 28 486 C15 C15 C 0 1 N N N 0.684 12.259 5.776 0.241 2.612 2.407 C15 486 29 486 C11 C11 C 0 1 N N S -0.762 12.555 5.197 0.708 1.826 1.174 C11 486 30 486 C9 C9 C 0 1 N N S -0.819 13.359 3.895 1.027 0.360 1.436 C9 486 31 486 C8 C8 C 0 1 N N N -0.045 14.723 4.134 2.255 0.258 2.326 C8 486 32 486 HC1A 1HC1 H 0 0 N N N -5.762 15.921 4.418 4.180 -0.785 -2.072 HC1A 486 33 486 HC12 2HC1 H 0 0 N N N -4.348 15.352 5.027 3.977 -2.399 -2.791 HC12 486 34 486 HC3 HC3 H 0 1 N N N -1.772 17.903 3.627 4.973 -2.490 1.362 HC3 486 35 486 HC71 1HC7 H 0 0 N N N 0.094 16.720 3.207 3.737 -1.187 2.930 HC71 486 36 486 HC72 2HC7 H 0 0 N N N -0.081 15.514 2.075 2.097 -1.856 2.720 HC72 486 37 486 HC61 1HC6 H 0 0 N N N -4.691 15.570 1.869 1.801 -1.197 -2.247 HC61 486 38 486 HC62 2HC6 H 0 0 N N N -5.172 14.226 2.614 1.969 -2.804 -1.495 HC62 486 39 486 HC14 HC14 H 0 0 N N N -4.301 12.159 3.835 0.653 -0.377 -1.962 HC14 486 40 486 HC22 HC22 H 0 0 N N N -1.767 12.948 1.267 -2.188 0.232 -2.196 HC22 486 41 486 HC23 HC23 H 0 0 N N N -1.525 12.069 -0.908 -4.246 -1.047 -1.764 HC23 486 42 486 H291 1H29 H 0 0 N N N -4.608 8.658 -1.895 -5.511 -1.981 -1.543 H291 486 43 486 H292 2H29 H 0 0 N N N -3.499 8.049 -3.200 -5.915 -3.709 -1.403 H292 486 44 486 H293 3H29 H 0 0 N N N -3.246 7.715 -1.432 -6.549 -2.548 -0.213 H293 486 45 486 H281 1H28 H 0 0 N N N -1.373 10.957 -2.896 -3.615 -3.937 1.642 H281 486 46 486 H282 2H28 H 0 0 N N N -2.328 10.069 -4.137 -5.381 -3.743 1.752 H282 486 47 486 H283 3H28 H 0 0 N N N -3.027 11.411 -3.160 -4.686 -4.981 0.677 H283 486 48 486 HC25 HC25 H 0 0 N N N -4.284 8.742 0.190 -2.183 -3.348 1.193 HC25 486 49 486 HC26 HC26 H 0 0 N N N -4.494 9.662 2.455 -0.130 -2.066 0.749 HC26 486 50 486 H131 1H13 H 0 0 N N N -2.915 10.015 4.293 0.746 2.006 -1.436 H131 486 51 486 H132 2H13 H 0 0 N N N -3.239 11.196 5.530 -0.953 1.591 -1.793 H132 486 52 486 H191 1H19 H 0 0 N N N -0.603 10.450 2.813 -1.204 0.009 1.073 H191 486 53 486 H192 2H19 H 0 0 N N N 0.659 10.099 4.151 -2.101 1.423 1.677 H192 486 54 486 H193 3H19 H 0 0 N N N -0.869 9.098 3.738 -2.399 0.817 0.030 H193 486 55 486 H321 1H32 H 0 0 N N N -2.825 12.510 9.640 1.896 5.561 -2.427 H321 486 56 486 H322 2H32 H 0 0 N N N -3.992 11.596 10.388 0.508 5.286 -3.507 H322 486 57 486 H323 3H32 H 0 0 N N N -2.498 10.874 10.341 0.513 6.682 -2.403 H323 486 58 486 HO3 HO3 H 0 1 N N N -0.748 8.479 7.143 -2.643 4.375 0.375 HO3 486 59 486 H161 1H16 H 0 0 N N N 1.358 10.137 6.044 0.120 4.673 1.704 H161 486 60 486 H162 2H16 H 0 0 N N N 1.015 10.877 7.511 -1.400 4.048 2.404 H162 486 61 486 H151 1H15 H 0 0 N N N 1.487 12.332 5.006 1.095 2.965 2.985 H151 486 62 486 H152 2H15 H 0 0 N N N 1.059 13.064 6.450 -0.419 2.003 3.025 H152 486 63 486 HC11 HC11 H 0 0 N N N -1.420 13.201 5.823 1.555 2.322 0.702 HC11 486 64 486 HC9 HC9 H 0 1 N N N -0.302 12.912 3.014 0.181 -0.100 1.947 HC9 486 65 486 HC81 1HC8 H 0 0 N N N -0.190 15.104 5.172 3.013 0.954 1.967 HC81 486 66 486 HC82 2HC8 H 0 0 N N N 1.059 14.572 4.164 1.979 0.528 3.346 HC82 486 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 486 O30 C2 DOUB N N 1 486 C2 C1 SING N N 2 486 C2 C3 SING N N 3 486 C1 C6 SING N N 4 486 C1 HC1A SING N N 5 486 C1 HC12 SING N N 6 486 C3 C4 DOUB N N 7 486 C3 HC3 SING N N 8 486 C4 C7 SING N N 9 486 C4 C5 SING N N 10 486 C7 C8 SING N N 11 486 C7 HC71 SING N N 12 486 C7 HC72 SING N N 13 486 C5 C6 SING N N 14 486 C5 C10 DOUB N N 15 486 C6 HC61 SING N N 16 486 C6 HC62 SING N N 17 486 C10 C14 SING N N 18 486 C10 C9 SING N N 19 486 C14 C18 SING N N 20 486 C14 C13 SING N N 21 486 C14 HC14 SING N N 22 486 C18 C22 DOUB Y N 23 486 C18 C26 SING Y N 24 486 C22 C23 SING Y N 25 486 C22 HC22 SING N N 26 486 C23 C24 DOUB Y N 27 486 C23 HC23 SING N N 28 486 C24 N27 SING N N 29 486 C24 C25 SING Y N 30 486 N27 C29 SING N N 31 486 N27 C28 SING N N 32 486 C29 H291 SING N N 33 486 C29 H292 SING N N 34 486 C29 H293 SING N N 35 486 C28 H281 SING N N 36 486 C28 H282 SING N N 37 486 C28 H283 SING N N 38 486 C25 C26 DOUB Y N 39 486 C25 HC25 SING N N 40 486 C26 HC26 SING N N 41 486 C13 C12 SING N N 42 486 C13 H131 SING N N 43 486 C13 H132 SING N N 44 486 C12 C19 SING N N 45 486 C12 C17 SING N N 46 486 C12 C11 SING N N 47 486 C19 H191 SING N N 48 486 C19 H192 SING N N 49 486 C19 H193 SING N N 50 486 C17 C31 SING N N 51 486 C17 O3 SING N N 52 486 C17 C16 SING N N 53 486 C31 C30 TRIP N N 54 486 C30 C32 SING N N 55 486 C32 H321 SING N N 56 486 C32 H322 SING N N 57 486 C32 H323 SING N N 58 486 O3 HO3 SING N N 59 486 C16 C15 SING N N 60 486 C16 H161 SING N N 61 486 C16 H162 SING N N 62 486 C15 C11 SING N N 63 486 C15 H151 SING N N 64 486 C15 H152 SING N N 65 486 C11 C9 SING N N 66 486 C11 HC11 SING N N 67 486 C9 C8 SING N N 68 486 C9 HC9 SING N N 69 486 C8 HC81 SING N N 70 486 C8 HC82 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 486 SMILES ACDLabs 10.04 "O=C5C=C4C(=C3C(c1ccc(N(C)C)cc1)CC2(C(CCC2(C#CC)O)C3CC4)C)CC5" 486 SMILES_CANONICAL CACTVS 3.341 "CC#C[C@]1(O)CC[C@H]2[C@@H]3CCC4=CC(=O)CCC4=C3[C@H](C[C@]12C)c5ccc(cc5)N(C)C" 486 SMILES CACTVS 3.341 "CC#C[C]1(O)CC[CH]2[CH]3CCC4=CC(=O)CCC4=C3[CH](C[C]12C)c5ccc(cc5)N(C)C" 486 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC#C[C@@]1(CC[C@@H]2[C@@]1(C[C@@H](C3=C4CCC(=O)C=C4CC[C@@H]23)c5ccc(cc5)N(C)C)C)O" 486 SMILES "OpenEye OEToolkits" 1.5.0 "CC#CC1(CCC2C1(CC(C3=C4CCC(=O)C=C4CCC23)c5ccc(cc5)N(C)C)C)O" 486 InChI InChI 1.03 "InChI=1S/C29H35NO2/c1-5-15-29(32)16-14-26-24-12-8-20-17-22(31)11-13-23(20)27(24)25(18-28(26,29)2)19-6-9-21(10-7-19)30(3)4/h6-7,9-10,17,24-26,32H,8,11-14,16,18H2,1-4H3/t24-,25+,26-,28-,29-/m0/s1" 486 InChIKey InChI 1.03 VKHAHZOOUSRJNA-GCNJZUOMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 486 "SYSTEMATIC NAME" ACDLabs 10.04 "(11beta,17beta)-11-[4-(dimethylamino)phenyl]-17-hydroxy-17-prop-1-yn-1-ylestra-4,9-dien-3-one" 486 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(8S,11R,13S,14S,17S)-11-(4-dimethylaminophenyl)-17-hydroxy-13-methyl-17-prop-1-ynyl-1,2,6,7,8,11,12,14,15,16-decahydrocyclopenta[a]phenanthren-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 486 "Create component" 2002-12-27 RCSB 486 "Modify descriptor" 2011-06-04 RCSB 486 "Modify synonyms" 2020-05-26 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 486 RU-486 ? ? 2 486 MIFEPRISTONE ? ? #