data_48C # _chem_comp.id 48C _chem_comp.name "5'-(D-alanylamino)-5'-deoxyuridine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-02-12 _chem_comp.pdbx_modified_date 2015-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 314.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 48C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Y64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 48C OAZ O1 O 0 1 N N N 18.181 24.707 6.893 3.248 0.089 2.122 OAZ 48C 1 48C CAU C1 C 0 1 N N N 17.563 24.122 7.785 3.292 -0.448 1.033 CAU 48C 2 48C NAT N1 N 0 1 N N N 18.083 24.186 9.061 4.299 -1.296 0.752 NAT 48C 3 48C CAV C2 C 0 1 N N N 17.461 23.547 10.158 4.362 -1.901 -0.452 CAV 48C 4 48C OBA O2 O 0 1 N N N 17.965 23.663 11.286 5.273 -2.668 -0.707 OBA 48C 5 48C CAX C3 C 0 1 N N N 16.309 22.801 9.929 3.361 -1.634 -1.417 CAX 48C 6 48C CAY C4 C 0 1 N N N 15.795 22.737 8.624 2.362 -0.779 -1.108 CAY 48C 7 48C NAW N2 N 0 1 N N N 16.449 23.395 7.535 2.332 -0.191 0.126 NAW 48C 8 48C CBB C5 C 0 1 N N R 15.917 23.348 6.132 1.245 0.733 0.463 CBB 48C 9 48C OBE O3 O 0 1 N N N 14.596 22.779 6.028 -0.036 0.119 0.203 OBE 48C 10 48C CBD C6 C 0 1 N N R 16.822 22.540 5.186 1.287 1.971 -0.460 CBD 48C 11 48C OBG O4 O 0 1 N N N 16.828 23.088 3.837 1.933 3.064 0.196 OBG 48C 12 48C CBC C7 C 0 1 N N S 16.160 21.206 5.234 -0.201 2.298 -0.718 CBC 48C 13 48C OBH O5 O 0 1 N N N 16.467 20.461 4.075 -0.519 3.602 -0.228 OBH 48C 14 48C CBF C8 C 0 1 N N R 14.673 21.509 5.288 -0.966 1.217 0.082 CBF 48C 15 48C CAA C9 C 0 1 N N N 13.806 20.251 5.724 -2.216 0.775 -0.681 CAA 48C 16 48C NAB N3 N 0 1 N N N 14.514 19.352 6.670 -2.988 -0.158 0.144 NAB 48C 17 48C C C10 C 0 1 N N N 14.919 18.027 6.699 -4.137 -0.682 -0.327 C 48C 18 48C O O6 O 0 1 N N N 15.526 17.624 7.695 -4.532 -0.382 -1.434 O 48C 19 48C CA C11 C 0 1 N N R 14.646 16.904 5.645 -4.931 -1.642 0.521 CA 48C 20 48C N N4 N 0 1 N N N 14.827 17.312 4.253 -6.131 -2.067 -0.212 N 48C 21 48C CB C12 C 0 1 N N N 13.286 16.198 5.914 -5.345 -0.950 1.822 CB 48C 22 48C H1 H1 H 0 1 N N N 18.927 24.701 9.215 4.981 -1.474 1.418 H1 48C 23 48C H2 H2 H 0 1 N N N 15.820 22.281 10.739 3.395 -2.109 -2.387 H2 48C 24 48C H3 H3 H 0 1 N N N 14.888 22.180 8.439 1.590 -0.564 -1.832 H3 48C 25 48C H4 H4 H 0 1 N N N 15.884 24.379 5.751 1.316 1.036 1.508 H4 48C 26 48C H5 H5 H 0 1 N N N 17.841 22.483 5.597 1.793 1.733 -1.395 H5 48C 27 48C H6 H6 H 0 1 N N N 17.256 23.936 3.841 1.934 3.885 -0.315 H6 48C 28 48C H7 H7 H 0 1 N N N 16.461 20.668 6.145 -0.430 2.221 -1.781 H7 48C 29 48C H8 H8 H 0 1 N N N 16.039 19.614 4.120 -0.022 4.314 -0.653 H8 48C 30 48C H9 H9 H 0 1 N N N 14.369 21.728 4.254 -1.238 1.595 1.067 H9 48C 31 48C H10 H10 H 0 1 N N N 12.885 20.611 6.207 -2.828 1.647 -0.913 H10 48C 32 48C H11 H11 H 0 1 N N N 13.547 19.676 4.823 -1.921 0.282 -1.608 H11 48C 33 48C H12 H12 H 0 1 N N N 14.766 19.831 7.511 -2.672 -0.399 1.028 H12 48C 34 48C H13 H13 H 0 1 N N N 15.411 16.138 5.840 -4.319 -2.514 0.753 H13 48C 35 48C H14 H14 H 0 1 N N N 15.716 17.757 4.149 -6.680 -2.711 0.337 H14 48C 36 48C H15 H15 H 0 1 N N N 14.786 16.507 3.662 -6.683 -1.270 -0.494 H15 48C 37 48C H17 H17 H 0 1 N N N 13.220 15.921 6.976 -4.455 -0.636 2.366 H17 48C 38 48C H18 H18 H 0 1 N N N 12.462 16.882 5.662 -5.957 -0.079 1.590 H18 48C 39 48C H19 H19 H 0 1 N N N 13.214 15.292 5.294 -5.919 -1.645 2.435 H19 48C 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 48C OBG CBD SING N N 1 48C OBH CBC SING N N 2 48C N CA SING N N 3 48C CBD CBC SING N N 4 48C CBD CBB SING N N 5 48C CBC CBF SING N N 6 48C CBF CAA SING N N 7 48C CBF OBE SING N N 8 48C CA CB SING N N 9 48C CA C SING N N 10 48C CAA NAB SING N N 11 48C OBE CBB SING N N 12 48C CBB NAW SING N N 13 48C NAB C SING N N 14 48C C O DOUB N N 15 48C OAZ CAU DOUB N N 16 48C NAW CAU SING N N 17 48C NAW CAY SING N N 18 48C CAU NAT SING N N 19 48C CAY CAX DOUB N N 20 48C NAT CAV SING N N 21 48C CAX CAV SING N N 22 48C CAV OBA DOUB N N 23 48C NAT H1 SING N N 24 48C CAX H2 SING N N 25 48C CAY H3 SING N N 26 48C CBB H4 SING N N 27 48C CBD H5 SING N N 28 48C OBG H6 SING N N 29 48C CBC H7 SING N N 30 48C OBH H8 SING N N 31 48C CBF H9 SING N N 32 48C CAA H10 SING N N 33 48C CAA H11 SING N N 34 48C NAB H12 SING N N 35 48C CA H13 SING N N 36 48C N H14 SING N N 37 48C N H15 SING N N 38 48C CB H17 SING N N 39 48C CB H18 SING N N 40 48C CB H19 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 48C SMILES ACDLabs 12.01 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CNC(=O)C(N)C" 48C InChI InChI 1.03 "InChI=1S/C12H18N4O6/c1-5(13)10(20)14-4-6-8(18)9(19)11(22-6)16-3-2-7(17)15-12(16)21/h2-3,5-6,8-9,11,18-19H,4,13H2,1H3,(H,14,20)(H,15,17,21)/t5-,6-,8-,9-,11-/m1/s1" 48C InChIKey InChI 1.03 DKBBANYKDGGYBY-LODYRLCVSA-N 48C SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N)C(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O" 48C SMILES CACTVS 3.385 "C[CH](N)C(=O)NC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O" 48C SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H](C(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=O)NC2=O)O)O)N" 48C SMILES "OpenEye OEToolkits" 1.9.2 "CC(C(=O)NCC1C(C(C(O1)N2C=CC(=O)NC2=O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 48C "SYSTEMATIC NAME" ACDLabs 12.01 "5'-(D-alanylamino)-5'-deoxyuridine" 48C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-2-azanyl-N-[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 48C "Create component" 2015-02-12 EBI 48C "Initial release" 2015-09-16 RCSB #