data_48Z # _chem_comp.id 48Z _chem_comp.name 2-deoxy-2-fluoro-5-O-thiophosphono-alpha-D-arabinofuranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 F O6 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-11 _chem_comp.pdbx_modified_date 2021-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.166 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 48Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ROM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 48Z O1 O1 O 0 1 N Y N 2.662 -3.232 2.791 3.293 -1.968 1.015 O1 48Z 1 48Z P P P 0 1 N N N 5.525 -3.829 -2.878 -2.805 0.056 0.353 P 48Z 2 48Z C1 C1 C 0 1 N N S 3.132 -2.367 1.754 2.898 -1.256 -0.159 C1 48Z 3 48Z C2 C2 C 0 1 N N S 2.706 -1.086 1.050 3.500 0.162 -0.139 C2 48Z 4 48Z F2 F2 F 0 1 N N N 3.816 -0.405 0.576 4.258 0.389 -1.293 F2 48Z 5 48Z C3 C3 C 0 1 N N R 1.902 -1.643 -0.119 2.266 1.097 -0.105 C3 48Z 6 48Z O3 O3 O 0 1 N N N 0.530 -1.881 0.269 2.480 2.192 0.788 O3 48Z 7 48Z C4 C4 C 0 1 N N R 2.596 -2.972 -0.404 1.159 0.154 0.430 C4 48Z 8 48Z O4 O4 O 0 1 N N N 3.574 -3.179 0.648 1.468 -1.117 -0.189 O4 48Z 9 48Z C5 C5 C 0 1 N N N 3.306 -2.856 -1.783 -0.223 0.643 -0.007 C5 48Z 10 48Z O5 O5 O 0 1 N N N 4.729 -2.991 -1.706 -1.230 -0.173 0.594 O5 48Z 11 48Z OP1 OP1 O 0 1 N N N 4.842 -3.451 -4.331 -3.159 1.451 0.699 OP1 48Z 12 48Z OP2 OP2 O 0 1 N Y N 5.356 -5.411 -2.632 -3.643 -0.956 1.283 OP2 48Z 13 48Z SP3 SP3 S 0 1 N N N 7.365 -3.333 -2.866 -3.268 -0.306 -1.684 SP3 48Z 14 48Z H2 H2 H 0 1 N N N 2.071 -0.471 1.705 4.111 0.305 0.752 H2 48Z 15 48Z H3 H3 H 0 1 N N N 1.971 -0.975 -0.990 2.023 1.455 -1.106 H3 48Z 16 48Z HO3 HO3 H 0 1 N Y N 0.046 -2.227 -0.472 3.223 2.760 0.543 HO3 48Z 17 48Z H4 H4 H 0 1 N N N 1.859 -3.788 -0.431 1.214 0.076 1.516 H4 48Z 18 48Z H52 H5 H 0 1 N N N 2.917 -3.646 -2.443 -0.359 1.678 0.308 H5 48Z 19 48Z H51 H5A H 0 1 N N N 3.073 -1.871 -2.213 -0.305 0.580 -1.092 H5A 48Z 20 48Z HOP2 HOP2 H 0 0 N Y N 4.900 -5.800 -3.369 -3.462 -1.890 1.111 HOP2 48Z 21 48Z HSP3 HSP3 H 0 0 N N N 7.517 -2.830 -4.055 -4.593 -0.081 -1.737 HSP3 48Z 22 48Z HO1 HO1 H 0 1 N Y N 3.274 -3.949 2.908 2.943 -2.868 1.066 HO1 48Z 23 48Z H1 H10 H 0 1 N N N 4.098 -2.047 2.173 3.237 -1.790 -1.047 H10 48Z 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 48Z P SP3 SING N N 1 48Z P OP2 SING N N 2 48Z P O5 SING N N 3 48Z C1 O1 SING N N 4 48Z C2 C1 SING N N 5 48Z C2 H2 SING N N 6 48Z F2 C2 SING N N 7 48Z C3 C2 SING N N 8 48Z C3 O3 SING N N 9 48Z C3 H3 SING N N 10 48Z O3 HO3 SING N N 11 48Z C4 C3 SING N N 12 48Z C4 O4 SING N N 13 48Z C4 H4 SING N N 14 48Z O4 C1 SING N N 15 48Z C5 C4 SING N N 16 48Z C5 O5 SING N N 17 48Z C5 H52 SING N N 18 48Z C5 H51 SING N N 19 48Z OP1 P DOUB N N 20 48Z OP2 HOP2 SING N N 21 48Z SP3 HSP3 SING N N 22 48Z O1 HO1 SING N N 23 48Z C1 H1 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 48Z SMILES ACDLabs 12.01 "FC1C(O)C(OC1O)COP(=O)(O)S" 48Z InChI InChI 1.03 "InChI=1S/C5H10FO6PS/c6-3-4(7)2(12-5(3)8)1-11-13(9,10)14/h2-5,7-8H,1H2,(H2,9,10,14)/t2-,3+,4-,5+/m1/s1" 48Z InChIKey InChI 1.03 ACXIGHNBDAUOFX-LECHCGJUSA-N 48Z SMILES_CANONICAL CACTVS 3.370 "O[C@H]1O[C@H](CO[P](O)(S)=O)[C@@H](O)[C@@H]1F" 48Z SMILES CACTVS 3.370 "O[CH]1O[CH](CO[P](O)(S)=O)[CH](O)[CH]1F" 48Z SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@H]([C@@H]([C@H](O1)O)F)O)O[P@](=O)(O)S" 48Z SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(O1)O)F)O)OP(=O)(O)S" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 48Z "SYSTEMATIC NAME" ACDLabs 12.01 2-deoxy-2-fluoro-5-O-thiophosphono-alpha-D-arabinofuranose 48Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4S,5S)-4-fluoranyl-3,5-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 48Z "Create component" 2011-05-11 PDBJ 48Z "Modify descriptor" 2011-06-04 RCSB 48Z "Other modification" 2013-01-08 RCSB 48Z "Modify synonyms" 2021-03-03 RCSB 48Z "Modify leaving atom flag" 2021-03-03 RCSB 48Z "Modify linking type" 2021-03-03 RCSB ##