data_493
#
_chem_comp.id 493
_chem_comp.name "{4-[2-ACETYLAMINO-2-(1-BIPHENYL-4-YLMETHYL-2-OXO-AZEPAN-3-YLCARBAMOYL)-ETHYL]-2-PHOSPHONO-PHENOXY}-ACETIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H36 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms RU85493
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-06-20
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 637.617
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 493
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1O49
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
493 C1 C1 C 0 1 Y N N 17.995 24.781 19.756 -0.498 -1.064 -2.002 C1 493 1
493 C2 C2 C 0 1 Y N N 16.963 25.348 19.058 -0.681 -0.937 -3.365 C2 493 2
493 C3 C3 C 0 1 Y N N 17.296 26.474 18.355 0.121 -0.070 -4.093 C3 493 3
493 C4 C4 C 0 1 Y N N 18.611 27.000 18.281 1.104 0.665 -3.450 C4 493 4
493 C5 C5 C 0 1 Y N N 19.671 26.439 19.043 1.280 0.538 -2.085 C5 493 5
493 C6 C6 C 0 1 Y N N 19.279 25.319 19.763 0.483 -0.329 -1.363 C6 493 6
493 C7 C7 C 0 1 N N N 16.020 28.084 17.016 -1.128 -0.816 -5.794 C7 493 7
493 C8 C8 C 0 1 N N N 15.130 29.082 17.698 -1.377 -0.722 -7.277 C8 493 8
493 C9 C9 C 0 1 N N N 20.158 24.536 20.675 0.680 -0.471 0.123 C9 493 9
493 C10 C10 C 0 1 N N S 19.720 25.056 21.973 1.692 -1.585 0.400 C10 493 10
493 C11 C11 C 0 1 N N N 20.364 24.265 23.080 1.889 -1.726 1.887 C11 493 11
493 N12 N12 N 0 1 N N N 19.656 23.271 23.645 2.846 -1.011 2.511 N12 493 12
493 N13 N13 N 0 1 N N N 20.242 26.483 22.042 1.191 -2.847 -0.148 N13 493 13
493 C14 C14 C 0 1 N N N 19.554 27.434 22.632 0.021 -3.355 0.288 C14 493 14
493 C15 C15 C 0 1 N N N 19.920 28.766 21.880 -0.493 -4.653 -0.275 C15 493 15
493 O16 O16 O 0 1 N N N 18.686 27.184 23.456 -0.616 -2.766 1.135 O16 493 16
493 O17 O17 O 0 1 N N N 21.478 24.541 23.415 1.187 -2.484 2.522 O17 493 17
493 C18 C18 C 0 1 N N S 20.309 22.296 24.439 3.038 -1.148 3.957 C18 493 18
493 C19 C19 C 0 1 N N N 19.185 21.499 24.943 4.404 -0.582 4.351 C19 493 19
493 C20 C20 C 0 1 N N N 19.496 20.724 26.217 4.758 0.615 3.488 C20 493 20
493 C21 C21 C 0 1 N N N 20.721 19.789 26.194 3.863 1.820 3.715 C21 493 21
493 C22 C22 C 0 1 N N N 22.118 20.388 25.871 2.436 1.535 3.245 C22 493 22
493 N23 N23 N 0 1 N N N 22.337 20.663 24.409 1.698 0.890 4.344 N23 493 23
493 C24 C24 C 0 1 N N N 21.370 21.448 23.641 1.963 -0.373 4.689 C24 493 24
493 C25 C25 C 0 1 N N N 23.370 19.786 23.688 0.663 1.638 5.062 C25 493 25
493 C26 C26 C 0 1 Y N N 22.769 18.400 23.384 -0.666 1.433 4.384 C26 493 26
493 O27 O27 O 0 1 N N N 21.410 21.469 22.349 1.344 -0.895 5.592 O27 493 27
493 O28 O28 O 0 1 N N N 16.134 26.946 17.871 -0.056 0.057 -5.435 O28 493 28
493 C49 C49 C 0 1 Y N N 23.255 17.249 23.965 -1.069 2.299 3.383 C49 493 29
493 C50 C50 C 0 1 Y N N 22.633 16.007 23.713 -2.284 2.114 2.754 C50 493 30
493 C51 C51 C 0 1 Y N N 21.492 15.887 22.834 -3.110 1.059 3.137 C51 493 31
493 C52 C52 C 0 1 Y N N 20.904 17.070 22.320 -2.701 0.193 4.150 C52 493 32
493 C53 C53 C 0 1 Y N N 21.549 18.350 22.579 -1.482 0.384 4.768 C53 493 33
493 C58 C58 C 0 1 Y N N 20.876 14.598 22.440 -4.419 0.857 2.469 C58 493 34
493 C59 C59 C 0 1 Y N N 19.476 14.465 22.247 -4.857 -0.428 2.162 C59 493 35
493 C60 C60 C 0 1 Y N N 18.735 13.305 22.158 -6.079 -0.610 1.546 C60 493 36
493 C61 C61 C 0 1 Y N N 19.490 12.157 22.202 -6.862 0.482 1.222 C61 493 37
493 C62 C62 C 0 1 Y N N 20.841 12.145 22.226 -6.430 1.762 1.520 C62 493 38
493 C63 C63 C 0 1 Y N N 21.575 13.394 22.383 -5.213 1.955 2.141 C63 493 39
493 P71 P71 P 0 1 N N N 18.954 28.497 17.266 2.156 1.799 -4.398 P71 493 40
493 O72 O72 O 0 1 N N N 20.488 28.887 17.256 1.472 3.256 -4.441 O72 493 41
493 O73 O73 O 0 1 N N N 18.013 29.650 18.121 2.314 1.288 -5.778 O73 493 42
493 O74 O74 O 0 1 N N N 18.137 28.259 15.605 3.601 1.905 -3.696 O74 493 43
493 O79 O79 O 0 1 N N N 14.317 29.479 16.716 -2.345 -1.460 -7.844 O79 493 44
493 O80 O80 O 0 1 N N N 15.130 29.422 18.857 -0.706 0.017 -7.957 O80 493 45
493 H1 H1 H 0 1 N N N 17.785 23.862 20.330 -1.123 -1.739 -1.435 H1 493 46
493 H2 H2 H 0 1 N N N 15.942 24.930 19.061 -1.447 -1.511 -3.864 H2 493 47
493 H5 H5 H 0 1 N N N 20.700 26.835 19.072 2.045 1.111 -1.584 H5 493 48
493 H71 1H7 H 0 1 N N N 15.669 27.821 15.990 -0.863 -1.842 -5.535 H71 493 49
493 H72A 2H7 H 0 0 N N N 17.009 28.511 16.729 -2.030 -0.527 -5.255 H72A 493 50
493 H91 1H9 H 0 1 N N N 20.112 23.428 20.557 1.053 0.467 0.531 H91 493 51
493 H92 2H9 H 0 1 N N N 21.251 24.605 20.470 -0.270 -0.720 0.594 H92 493 52
493 H10 H10 H 0 1 N N N 18.611 24.996 22.081 2.643 -1.336 -0.070 H10 493 53
493 H12 H12 H 0 1 N N N 18.650 23.257 23.475 3.407 -0.404 2.003 H12 493 54
493 H13 H13 H 0 1 N N N 21.123 26.829 21.662 1.701 -3.318 -0.825 H13 493 55
493 H151 1H15 H 0 0 N N N 19.336 29.573 22.380 -1.445 -4.902 0.195 H151 493 56
493 H152 2H15 H 0 0 N N N 21.015 28.968 21.842 -0.636 -4.551 -1.351 H152 493 57
493 H153 3H15 H 0 0 N N N 19.753 28.714 20.778 0.227 -5.447 -0.078 H153 493 58
493 H18 H18 H 0 1 N N N 20.931 22.738 25.252 2.984 -2.201 4.235 H18 493 59
493 H191 1H19 H 0 0 N N N 18.283 22.139 25.085 5.163 -1.353 4.222 H191 493 60
493 H192 2H19 H 0 0 N N N 18.805 20.812 24.150 4.378 -0.275 5.396 H192 493 61
493 H201 1H20 H 0 0 N N N 19.590 21.436 27.069 4.688 0.323 2.440 H201 493 62
493 H202 2H20 H 0 0 N N N 18.594 20.145 26.527 5.788 0.903 3.698 H202 493 63
493 H211 1H21 H 0 0 N N N 20.778 19.247 27.167 4.260 2.671 3.161 H211 493 64
493 H212 2H21 H 0 0 N N N 20.518 18.948 25.489 3.849 2.061 4.778 H212 493 65
493 H221 1H22 H 0 0 N N N 22.300 21.307 26.475 2.461 0.870 2.382 H221 493 66
493 H222 2H22 H 0 0 N N N 22.927 19.735 26.273 1.946 2.471 2.975 H222 493 67
493 H251 1H25 H 0 0 N N N 23.767 20.278 22.770 0.913 2.699 5.060 H251 493 68
493 H252 2H25 H 0 0 N N N 24.324 19.710 24.259 0.605 1.281 6.091 H252 493 69
493 H49 H49 H 0 1 N N N 24.134 17.321 24.626 -0.428 3.116 3.087 H49 493 70
493 H50 H50 H 0 1 N N N 23.046 15.114 24.211 -2.596 2.787 1.970 H50 493 71
493 H52 H52 H 0 1 N N N 19.971 16.996 21.735 -3.337 -0.626 4.450 H52 493 72
493 H53 H53 H 0 1 N N N 21.115 19.277 22.167 -1.164 -0.285 5.552 H53 493 73
493 H59 H59 H 0 1 N N N 18.882 15.390 22.153 -4.246 -1.282 2.414 H59 493 74
493 H60 H60 H 0 1 N N N 17.636 13.296 22.060 -6.422 -1.607 1.312 H60 493 75
493 H61 H61 H 0 1 N N N 18.977 11.180 22.219 -7.816 0.335 0.736 H61 493 76
493 H62 H62 H 0 1 N N N 21.323 11.158 22.122 -7.046 2.612 1.265 H62 493 77
493 H63 H63 H 0 1 N N N 22.674 13.428 22.459 -4.876 2.954 2.373 H63 493 78
493 H72 H72 H 0 1 N N N 20.665 29.659 16.732 2.062 3.827 -4.953 H72 493 79
493 H74 H74 H 0 1 N N N 18.314 29.031 15.081 3.453 2.241 -2.802 H74 493 80
493 H79 H79 H 0 1 N N N 13.753 30.110 17.147 -2.505 -1.399 -8.795 H79 493 81
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
493 C1 C2 SING Y N 1
493 C1 C6 DOUB Y N 2
493 C1 H1 SING N N 3
493 C2 C3 DOUB Y N 4
493 C2 H2 SING N N 5
493 C3 C4 SING Y N 6
493 C3 O28 SING N N 7
493 C4 C5 DOUB Y N 8
493 C4 P71 SING N N 9
493 C5 C6 SING Y N 10
493 C5 H5 SING N N 11
493 C6 C9 SING N N 12
493 C7 C8 SING N N 13
493 C7 O28 SING N N 14
493 C7 H71 SING N N 15
493 C7 H72A SING N N 16
493 C8 O79 SING N N 17
493 C8 O80 DOUB N N 18
493 C9 C10 SING N N 19
493 C9 H91 SING N N 20
493 C9 H92 SING N N 21
493 C10 C11 SING N N 22
493 C10 N13 SING N N 23
493 C10 H10 SING N N 24
493 C11 N12 SING N N 25
493 C11 O17 DOUB N N 26
493 N12 C18 SING N N 27
493 N12 H12 SING N N 28
493 N13 C14 SING N N 29
493 N13 H13 SING N N 30
493 C14 C15 SING N N 31
493 C14 O16 DOUB N N 32
493 C15 H151 SING N N 33
493 C15 H152 SING N N 34
493 C15 H153 SING N N 35
493 C18 C19 SING N N 36
493 C18 C24 SING N N 37
493 C18 H18 SING N N 38
493 C19 C20 SING N N 39
493 C19 H191 SING N N 40
493 C19 H192 SING N N 41
493 C20 C21 SING N N 42
493 C20 H201 SING N N 43
493 C20 H202 SING N N 44
493 C21 C22 SING N N 45
493 C21 H211 SING N N 46
493 C21 H212 SING N N 47
493 C22 N23 SING N N 48
493 C22 H221 SING N N 49
493 C22 H222 SING N N 50
493 N23 C24 SING N N 51
493 N23 C25 SING N N 52
493 C24 O27 DOUB N N 53
493 C25 C26 SING N N 54
493 C25 H251 SING N N 55
493 C25 H252 SING N N 56
493 C26 C49 SING Y N 57
493 C26 C53 DOUB Y N 58
493 C49 C50 DOUB Y N 59
493 C49 H49 SING N N 60
493 C50 C51 SING Y N 61
493 C50 H50 SING N N 62
493 C51 C52 DOUB Y N 63
493 C51 C58 SING Y N 64
493 C52 C53 SING Y N 65
493 C52 H52 SING N N 66
493 C53 H53 SING N N 67
493 C58 C59 SING Y N 68
493 C58 C63 DOUB Y N 69
493 C59 C60 DOUB Y N 70
493 C59 H59 SING N N 71
493 C60 C61 SING Y N 72
493 C60 H60 SING N N 73
493 C61 C62 DOUB Y N 74
493 C61 H61 SING N N 75
493 C62 C63 SING Y N 76
493 C62 H62 SING N N 77
493 C63 H63 SING N N 78
493 P71 O72 SING N N 79
493 P71 O73 DOUB N N 80
493 P71 O74 SING N N 81
493 O72 H72 SING N N 82
493 O74 H74 SING N N 83
493 O79 H79 SING N N 84
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
493 SMILES ACDLabs 10.04 "O=C(O)COc1ccc(cc1P(=O)(O)O)CC(NC(=O)C)C(=O)NC4C(=O)N(Cc3ccc(c2ccccc2)cc3)CCCC4"
493 SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H](Cc1ccc(OCC(O)=O)c(c1)[P](O)(O)=O)C(=O)N[C@H]2CCCCN(Cc3ccc(cc3)c4ccccc4)C2=O"
493 SMILES CACTVS 3.341 "CC(=O)N[CH](Cc1ccc(OCC(O)=O)c(c1)[P](O)(O)=O)C(=O)N[CH]2CCCCN(Cc3ccc(cc3)c4ccccc4)C2=O"
493 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H](Cc1ccc(c(c1)P(=O)(O)O)OCC(=O)O)C(=O)N[C@H]2CCCCN(C2=O)Cc3ccc(cc3)c4ccccc4"
493 SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC(Cc1ccc(c(c1)P(=O)(O)O)OCC(=O)O)C(=O)NC2CCCCN(C2=O)Cc3ccc(cc3)c4ccccc4"
493 InChI InChI 1.03 "InChI=1S/C32H36N3O9P/c1-21(36)33-27(17-23-12-15-28(44-20-30(37)38)29(18-23)45(41,42)43)31(39)34-26-9-5-6-16-35(32(26)40)19-22-10-13-25(14-11-22)24-7-3-2-4-8-24/h2-4,7-8,10-15,18,26-27H,5-6,9,16-17,19-20H2,1H3,(H,33,36)(H,34,39)(H,37,38)(H2,41,42,43)/t26-,27-/m0/s1"
493 InChIKey InChI 1.03 MWEWSHNGVWABKG-SVBPBHIXSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
493 "SYSTEMATIC NAME" ACDLabs 10.04 "{4-[(2S)-2-(acetylamino)-3-{[(3S)-1-(biphenyl-4-ylmethyl)-2-oxoazepan-3-yl]amino}-3-oxopropyl]-2-phosphonophenoxy}acetic acid"
493 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[(2S)-2-acetamido-3-oxo-3-[[(3S)-2-oxo-1-[(4-phenylphenyl)methyl]azepan-3-yl]amino]propyl]-2-phosphono-phenoxy]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
493 "Create component" 2003-06-20 RCSB
493 "Modify aromatic_flag" 2011-06-04 RCSB
493 "Modify descriptor" 2011-06-04 RCSB
493 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 493
_pdbx_chem_comp_synonyms.name RU85493
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##